Tan0020096 (gene) Snake gourd v1

Overview


Name	Tan0020096
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	exosome complex component RRP42
Location	LG01: 68356769 .. 68375080 (-)
RNA-Seq Expression	Tan0020096
Synteny	Tan0020096

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACCTGAATCAACCTAATTAGGTCGATTTAATTCAGGTTGTAGACAATCTGGATAGTGCACAGTCTCAAACTTTCGTCTTCTCCTTTCATGTTGTACGATTTTAGCCAAGGAGGAACTGGCGAGTAGAGACGTTCTGGTAAGGTATTTCTTTTTCCCCTTCTATTTTCCTCTTTTTTTTCCTTAATTTCTTTCTTTTCTCCCTTCTTTTGGTTTTGTTTTTTTTTTGTTTCCTTTTTCTTTCTCTGGTCCCCTTTTCCTTTCCCTATAGCAACCACTAAGACCCCCATCTTCCTCTTCTCGTTTTGTCGGCAACCCAACCCCGATTCCCCTTTTTTTTCTTTTCGTTGTCGTCGGTGAGCTCGGGGAACCAAAACCCTCTTCCTTTTCGGTGAGATCGAGACCCACGCGAGCTGGGTATTGTCCAGCGCCCTTCTTAAATACTCCTTCGGATTCGATTAAAGATTTCAAATGGATTATGACCTCTAAACCTTGTCCACATTGCTTAGGAACCTTATCGGCTTGCTTTAGGAGCGCGCAAGAAGTTTAGTAAGTAAATTCTACCTGTGGGGTTGTTTTCTTGTGTGCTAGCATGCTGCGTGCTTAACTTTGTTATATTACACGTATGGCTACTCTTGAATCTATATATAATTTGAGTTGCTCTTGGGCTGGGTGGTTGTTTGAACTGTTGTGGATGTTGAACTTGGTGTGTCACCTTTTTGTGAATAAGCATGTTGCATTGTATTCTTGTGATAAGCGTGTGCTTTGTTGAGATTGGTTTGTTATCATGATATTATGCTTAATGTATTGTGAGCATTGATGGTAAAAGTATATCATAGTTGTTTTATGTAAATTTTTGACATGAACCAGAGCTAGGTGCATAATGTGTAGATTCTATGCATTCTAGCGAGCTCAGGTGAGGTTAGAAACCTTGAATGAGACAAAGGAAAGTTAGGTGAATGCTAGTGCATCTCAAATAAAAATGGTTGAGAAATAGTATGTCACTAACAGATTAAGAGGAGCATCGATGCCTTGGTAACTATGGGCAAGGGTCGGTGTGATGTATCGTGAAGCAAGTATTGGAACCTTGGTAACTATGGGCAAGGGACAATATGTTGCTAGGTTGTCGATGCCTTGGTAACTAGGGGCAAAGGTTGATGATGATACCGAGACCTTGGTAACTATGGACAAGGGGCAATGTGATAAGTTGGAGGCTAGTATTGGAACCTTGGTAACTTTTGGCAAGGACAGTACATTGCGAGGTTGTCGATGCCTTGGTAACTATGGGCAAGGTCGATGAAAATGCCAAGACCTTGGTAACTATGGGCAAGGGTCAGTATGTTAAGTTTGAAGGCAAGTGTTGAAACCTTGGTAACTATGGGCAAGGGTCAATACGTTGTTGAGTCATCGATGCCTTGATTACTATGGGCAAGGGTCGGTGCACAGTTCGAGACCTTGGTAACTATTGACAAGGAATCATACGCCGAACTCTGGATAGATTTGTTGAGGCTCTAAGATAGAGGTTGATGCATCTCGAAGGGTAAGTCTTGGGAGAACTTTATAATGGCTAACTTATGAACGTCGAGTGGTTCAGTGGAGTCTAGCGAGTTTGTGAAGTTTGATTGTAATTCAAGTGTGCATAACTTGATGTATGTTTTGCTTGTTTTATGCATAAAAAACATGTATATTTGAACGTAAGTAGCATGATGTTTGCCTCGTATGCTGTATATTGTTTGATGGCTCCTCAGGTGTGAGCTACTTACCAGTACGTGTTATGTACTGACTCACTCCCAGGTTTTGCAGGTAATGATGAATATGACGACCTTAGTGGTGTAGAAGAGAAGGGATGAGAAGACATACCATAATCGATAGTTATTTACTTAATGGTGCTATTGCTGAGTTAGTTTTACTAAGTTAACTTTGTAGCTACATTGGCTTGAGGTTTTGGTACTGTTGTTGTTTTCCTCTTTAGAGTAGATCTATAAACCGGTTGGTTAGTTTTGAGTTATAGTTAGAAATCGACATGTGAGTTTGTTTTACACTTTTAAAGGTTGACTTGTTTCAAAGTTGATGAGAAAGACATTTCTGGTTGTTGAGCGTTTCTGAATCATTAATTGATTAGTGTCTTGGAGTTTGAATGAGTTATCTGGTTGTTGGGTTTTAGAAGTGTGTTTTTGTTTAAACATGTACTTCTAAAATTTTGGTATTGTTGTAGTTACGTCGTTATGCTGCCGTAATTTTCGGGACATATGGTTGATAGTTTAGTTGTGTTCCCTAGTTTAGACTAATTCTTGGGGTCGTTACAGTTGGTACAGAGCGGAGTTGTTCCTGTAGACTGACCTAGGAAAACTAGGTTGTTAAGTTGTTTTAGGTTTAATGGTCTTTCTCAGTCTCTTCTCCATCACTAAGTATGTTGACCTATATTTGCTGAGATATTGGTTGTGTGGATTGCTTGTTTGGAATGGTTATATATGGCCTACTTATTTGCTTTTTTGGTATGTTTTGTCTTGCATATTGGTTGAAGCTTGTTTGTTAGTAGGCATATGATGCTCCCTTAGTTAGCTAGGCAACTTGTGCTTATCTCGTGGATGTTGTTTGCTAGTAGGCGTAGGATGTTGCCATAGTTGCTAGATAGCTTGTGCTTGGACTTATGCATGTTTGTCGTTGGTAACCTTAAGTTATTGCTTTAAAGTTTAAGTTAGTGCTTTTGTCTTATAGTTTGTTAATGAATTGGCTTCAAGATTTTAACAAGTGAGACCAAGACACTAAGAAACCAAGGAAATTTTCTTAGGAGGCAGTGAAGTTGGGTGAGCTCTTTATTTCGATCCAGACTCTTGGAGAAAATTTGGTTAAGTTGGACAAACAAGATTTAGGCATAAGTGTGGGCATCGATTGATTGACATTTAGCTAAGAAATCATTAGAAGTGTGTTTTTGTTTAAACAAGTACCTGTAAAATTTTGGTATCATTGTAGTTACGTCGTTATGTTGCCGAAGATTTTGGAGACATAATACGTACTTGATAGTTTAGAAGTGTTCCTAGTTTAGACTAATTTTTGGGGCCATTACACACTGGCAGCCTTCAACTCTCACTCTCTCTCGAACTCACTCCAAAGGTAAACGCTGAAGGCCTGTTGCCAGCGAAGCAGCAACAGTCGTCACCGCCCCCTCCCAACGCCACCGTCATCATTCGAGTCGCGCCATCGTCAGTAACATCTTTGTTCTCTTTTTCTTTCCCTTAATCTTCAATCTCTAGTTTATGCTAAAACCCCAATGACCCAACCCTAATTGGCGAAAACAATGTCTAAACCTTCTTCTTCTGGGTTTAACTTCCCGCCGGTTGTGTGTGCTTCACCAGGTTTCTTTTCCTAAAAAGTAGGAATGGTGGGGCTTTCTACGGGAGAAAAGCTTTTCATACAAGGCGGTATTGCTCAGGACCTTCGCACAGATGGTCGAAAGAGACTAACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGTATAATCAAAATGGAGTAGTAATTATGCCTTATTTGCTTGTTCTGTTCTTTCCCTTTATGTGTTTTTATTTCTAAATGATCTTATGTTTAGGCAAATGGTTCAGCAAGGGTCAGAATGGGCGGCACTGAAGTTATTGCTACTGTCAAGGTATAAATGGTTTGAGCTTTGTTCTCTTTGAATTATACTCTTCACCAGTTTTTAACCAAAAGATTGCAATAGCTCTGTTTTTCGTCTGTGAAACTTTAAACTTGGGTTTGGTGGGATGATGACTGCTTAGATATGTTTAAGCAGGCTGAACTTGGAAGGCCTAATGCGTTGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGCAGCCCGATTGCGGAGCCAGCGTTTGAGGTGTGAAAACTTGCTTATTTTCACACATTTTTTTCATTCTTGTGTGTGTAATATATTATACATATTTTAATATAACAAAAATAAATTGAGTTTATTATATGAAATACTATATTTATTAAAGTTTATATATTTTTTAATCTAATTTTCCATTTTAAAATTTCAAATTCAAAATCTAGATACAATTTTTTTTTTTGATGAGAAACATGTGATATCATTTCATTGATGGTATGAAATGTACAAAAGAACGGGTTAAGGAACCCAATTACAAAAGAGAGTCCCAACTATTAACAAGTGAAGTGAGACTGTAATCACAAAAGTGAGGAGTTAATTTACACCAAGAGATAGCTAAGAAGATAATATGGTCGAATAACTTGTGATGATCCCGAGCACAATCTTGGAAGATCCTGTTGTTCCTTTCTATCCAAATGGACCAAAAAAGAGCTTTAATCATATTGTTCCATAAGCATGCTCTATCTTTGGTGAAGGGGTGACCCGGAAGAAGAGCTTCAAGAAGCGTAGCCATCTTGCTTGGGAGGACAAATTGTAATTTGAAGGTTGTGAGGACGGTCCATAATTGGGAAGTGTAACAACAACTGGTAAAAAGGTGGCTCATGGATTCATTGGCTTGCCTACAAAGAACACACCAACTAGGAGATGATACAATCCAAGGAGCCTTTTTCAGAAGAGTATCTGCCGTATTAATGCCTTCGTGGCTTACCTCCCATAGGAAAAAACGAATCTTTTTAGGAGTAGGCCTTTTCCATATGTTGGTGTACAAATCCTTGGAAAGGTGATCGTTGCTAGTTACAACCTTGAAGGAGAGCGATTTTGAAGTGAAAATGCCTGTTGTATCAAGGGTCCATCTCCAAGTGTCAATATTAGTTTGTGTCGAAGGAAGGGGAAGCAAAGATGACAACCTCATCCATTCTGTTATCTCCTCCTCTTTTAAATTCCGATGAAGGCCAAGGTCCCAAGATAAGTTATCCAATCCTCTCATATAATGGAGCCATCCTTCTTCAAGGACAAGGCAAAAAACCGAGGGGCTAAGGCTTTAATGGTATTGCCACCCACCCATTTATCATACCAGAAAGATGGTTGATGGCCATTACCCACAACACTATTAACATTTTCATAAATCAACCCCCTTTTGTGCCATGATGTATTTCCAAGGTCCATGATGATATTTGAGCTTCTTGTGATCCGGATGAAGATCGAAATGTCTGGTTCCATATTTGGCAACAATAAATCTCCTCCATAGGGATGATTTTTCAGAATGAAACCACTAAATCCATTTGGCAAGGAGACTCTTGTTTTTGGCTTTAAGGTCAGTGAGCCCCAAGCCACCTTCAACCAAGGGGCGACAGACCGTTTTCCAGCTTATAGAATGAAAGCCCCTTTTCTCATTGTTGCTATTCCATATGAAGTTTCGGAATAGTTTCTCCAAGGTGTTGACAACCTTCGATGAGATTTTGAAGATGGATAAGTAGTAAGTGGGTAGGTTTGTTAAGGTTGCCTGAATGAGGGTTAACCGACCACCTTTGGATAGGTATGCACCCTTCCATCCTTTGAGCCGTCTCTCAACCTTTTCAATGATAGGAGCCCAAAAGGATTTTGTGTGAAGTTTACCATTCAAAGGGAGCCCTAGGTAAATCATAGGCCAATCAACAATCTTGCAACTGTAATCCCTGGAAAAGTCTGAAATACTTGATGATGGAAGATGAATTCCAATGATCTCAGACTTGTGATGATTGATGGATAGACCAGAAGCCTTTTCAAAGAGCTTGACCGTGTCAAGAAGGGCAGTGATATGCTCTTTGTTTAGAGCGGAGAAAAGGATGGTGTCGTCAGCAAACTGGAGATGATTGATAGTAAGCTTATCATTTCCCACCTCAAAGCCACTAATATGGTCGTTTTGCTCTTCGAGTGATAACAATCTGCTGAGGCAATCAACAATTAGAATAAAAAGGAAGGGGGAGAGGAGAGGGGGTCACTTTGCCAGAGACCCCTAAAAGCAATAATCTTTCCTCTAGGCCGCCCATTAAGAATAATGGAGAAATTTGCAGAAGAAATACAACCATGAATCCACTTTTTCCCGGTGTTCCCAAATCCTTTTTTAGCAAGGATAAGGTTTAGGAAGTCCCAATCCACCTTATCGAAGGCCTTTTCAAAGTCAAGCTTAATAACAATACCTTGCTTCTTACGCTTGTAATAATCTTCAATAAGCTCATTTGCAATGAGGGAAGCATCAATGATCTGTCATCCAACCACAAAGGCGAATTGAGATTCAGAAATAGTATGAGGAAGAACCCTTTTGAGCCGTTCAAAAAGGACTCTAGTAATCACTTTATAGAGGCCCGTGGTGAGACTGATTGGCCTGTAGTCCCCTACAGATTTAGCATCTACTTTTTAGGTGTGAGGTAAATGTAAGTTTCATTCAAGTTTGCATTTACAATGCCCTTAGACGGACTAGGAGACCAAACCCCTCTGATCGGAGATAGTGGGACTAGTCCCACTCCCTCCAAAAACTCGTGATTAGTGAGAGGATGGTGAAAACCTAATGAAAGTGAAGAGGATGAATCAAAGGTTGACAAGATAGAGGCCACTGAGTGTAACCTCTTATTAGAAAATTGATAAATGCGGGAAAATAATTCACAAATAGGCTTAACACCCACCTACTAATCCTCTAAAAAATAAATATCAGACTCGTCTCCAATAAAGTATTTAACGAAATAGGAAAACACAGGAAAACCCAAAGCTATGGTCAGCTTGAAAATCTCCAAAGTTTGGCCTTCAAAATAATCTTTGATCACCTATAAATATAAAAGAAATGCATGAATTAAAACCCAAAAACTATAAGGGGTTGTTTGGGGCGCTGAGTGGGTTATAATAGTCTGTGGGTCATTATAGTCTGTGGAATCATATAATATTATTTAAAATGCAGAGTATTATAATCTGGGGTTATAATAGTCTGTGTTTAAGGTGCAAAATATTCCACAAGTTATAATAACATATGTTATTATAACTTGTGCCCCAAACAGACCCTAAGAAATCTAACTAAAAACAACCAAAACAAGACATAACACATAACTATAAAATAAACTTATCAAGTACGCTTATTCGAGGCAAAGATGTAAATGCAATTGGTTGAAGAGGGAGACAAAAAACTAAGTTCTTTCATCGGTTTCTGGCTGCACGTAAAAGGAAGAATTCAATTTCTGAGTTGTTTTCTCGTGATGGGATGAGTTTTTTAGCGACCAATGTTATAGAGATGGAGTTCATCGATTTCTATTCGAAGTTGTTTACAAAAGACTCTAATGTACAGTTTCTACCTACCAATCTTGATTGGGGTAGTATAAGTATTTCACAACCAACTTCTTTGGAAACTCCATTCACTGGAGAGAAGGTTTACCTTGCTGTACAATCATTTGGTTTAGGTAAGTCACCTGGTCCGAATGGGTTTACTGCTGATTTTTTTAAACATTCTTGGACCACCATCAAACAGGATATTACGACAATGATGCAAGCCTATTTGTAATTACCCTTTGGGGGGTGTTTAGTTTATGGGGTTGGGTTGGGTTGAGTTGAGTTAATAACTCAACTCCTTGTTTGGCCCACCAACAATTATAACCGGTGACTTAATAACTCAACCCCATGGAGTTGAGTTATTAACTCAATTGTATGGTACTTTCCGATGGTGGTCCGACGACTTTCTGACGACAACCCGACGGTGGCCCGACGACTTCCCAATGACGGTCCGGCGAGATGAAGAAAGTGGAGAAAAGTAGAAGAATGAGAAGAAGATGAGAGTTTTGAAGCGTGCCTTTAAGTTGCTAATACTCTAGTTTAAATAGGCACCAAAAGTCCTAATTCTTTTAGAATAAGGAATTCTAATCCTTTTTTAAACTTTAAACCACCCTTTCCTAATCCTGATTTGATTATCCAAATATTCAAATTTAAAACAAATACAATTAAAGAACCCAATTTTACGGGGTGTCACAATATACCCATCTAAGAAAAACTTTCGTCCTCGAAAGTTGCTAGAACATTACAACAACCACGTCCTCGAATCATAATCTAAACTTAAACTCTAAATACCTTAGCACAAGAACAAAGAAGTCAAAAGCATAGCATAACAAGTATTAACACACAAGCAACTCAAATAACTTTAACTACTTTACAAAATAAAAGTGGAGATGACGAGGTGACTTCCTGCGAGAGGCTATAAGGATCGTTGTCTACGATGTAGGCGAGTATGCAGAATCTAAAACTCATGCTCTGATACCAACTGTAACGACCCTAATTTTTCAAACCCAAAATTTCCTAGGGACATTACTAAGCAACACCGCCTGCACCAAAAATTTCGACAGCATAATGGCGCTGTTTGGACCTTGATGACATATCTAATATTTTGTAGATATGTAACTTCAATATGACATAAAATATTTAAATATGTTGGCATATTTTTAACACCTTCATAAGGTAAACTATTTATTCCATTCTAAAGATGTCCATAGACAATGCATGTGTTTAGACAAATTTAAATAAACACTCTTCATATGTAAAGTATTAATACTAATACCTAACTAAATTAAAATAAAAAAGTAGTGGTGAACATGTGCATAAAAAAAGAAATAAAGTTCATATTGAAGAGTAAAAGTTCTAAATAATGAATTTTATTGGAAAAGAAATATTGATATCAACCCCAATATCCATTACTTTTGCAAATATCCCTAACATACATTTGGAAAATGGTAATATATATTGTAATTTTATAATTGATCACATAATTGAGTTTTGAAATTGTAGACAAATGTGTTTGTATTTGATTTGTAGACAATGAACACACGTTTTTCTTGCAAAGTATTCATATTATACCTAAGTACTTGTGACAAAATAGCTAAGTACTTAATTGGAGTAATGGTGAACATGTGTTTCAAAAGAAGAAACTCCTTCATATGGAAGAATATGTTCTCAATAACATAAGATAAAAATGAATTTTATTGGAAAAGAAAAATTGATATCAATTCAAATATTCAGTACTTTTCTAAATATCCCATAAATCTTGCAAATGGTAATATATATGGTAAATTTGTAGTTGATCTCATTATGAAGTTTTGAAATTATAGACAAATATGTTTGCAATTAATTTGGTGGAAACAAAAAATGTAAGAAAAAAGTCACAAAAAATCATACTTATACACTTTACAAAAAACTGCACCAGATATCCCTGATATAATAACTCAACTCTGCACCCCAAACACTGACTTCCTGACTCAACTCAACTCAACTCTGCACCCCAAACACTGATTTCCAGAACTCACTGACAAAACAACTCAACTCAACCCAACTCAACCTAACTTTGCGATCCAAATGCCCCCTTAGACTTTATTTTGCTTGGGTGAAACATTTTGTTGTAAGCCCCCCCTTGTTTTTTGTGGGCTTGTTTTTTGTACGCTTCTTTCATTTTTTCTCAATGAAAGCTTGGTTTTTCATAAAAAAAAGACATTGGGATTATTAATGTGGCACTGAACGATACTTATATTTGTGTCATCCCTAAGAGAATGGACACTAGAACTGATTATCACCCCATTAGCCCCCTCCCTTGTGCTTATATGATTCTTGCTTGTGTTTAATCTAATCGGTTAAACCAAGTTCTTCCTTTACTATTGTTGATAATCAAATGGCTTTTGTGTCTAGTCGACAAATTTTGGACGCTTATCTAATTCCAAATGAATTGATTGATGATTGGAATAATTCTAATACGGAAGGAGTGATCATTAAGCTAGACTTGGAAAAAGTTTTTGATAAAGTTGGTCGGGATTTTCTGGATGGAGTTCTACTGGCCAAAGATTTTGAGATTGTTTGGAGGAAATAGTTTTGAGGTCACATATTTATTGCTAACTATTCAATTATTATTAATGGGCAACCATTAATAATATTATCCAAAAAAATCTTCCTTACAAGGGTGTATTTGACAAGTTGACCCACTCTCACCTTTACTTTTTATTTTGGTCTTAGATTGTCTTAGTCGTTTATTGTCTCATAGTGCTCTTCTGAGAGAGATTGTGTCCCATTCAATTGGAACATTTTCACTTGGTTTGAACCATTTGCAATTTGCAGATGATGCTTTGTTATTCTCTACCGTGGATTTTGTCGCTCTGGATAATCTTTTCAATGTTGTTGAAGTATTTGAGCGGGCTTCTTGCTCGATTATTAATTTCAATTAGAGTGAAATGTTGGGTATAAATACTTGTGTTTTAGAATTGGAAGCTTTGGCTTCAAAGTTTTGTTCTAAACAAGTAGCCTAACCTACCACATATCTCGGTCTTCCTTTAGGGGTAATCCTAAATTTTCTTCATTTTGGCGATCGGTTTTAGAGAGAATTCAGCAAAAACTTCACATTGGAAGTACACATACATCTCAAAAGGTGGTAGGTTAACCCTTGTACAGGCTACTCTATCTAGTATGACTACTTACCATCTTTCTCTTTTTAAATTACCATAAAAGATAGCAAAAGATTTGGATAAGCTCATTAGAGATTTCTTGTGGGAAGGTTTGACAGGTGATGGTGGTAGTTTGCATACTATTATTTGGGAGAAGACTCAACTTCCCCAACTTATGGGAGGCCTTGGTATTGGAAATTTCCAGCTTAGAAATTTGGCTCTTTTGGCTTAGCGAATTTGGAGATTTTTGCATGAACTTGATGCCCTTTGGAGAAAAGTTATAGTGGCTAAATACTATTAAGGAGATGTTTTCTATGATTCGTCAAAAGTAAATTAATCGTGGGTCCTTTAAGTCTCTTGGCAGATATATCTGTAGCACCATAGACATTTTTGCAGCTGTAATCTTAAAAAACTTGGCAATGGTATGCATTCATCTTTTTGGAATGATTTGTGGCTTGATGCTTCTATTAAATTAACTTTTCTAAGGCTTTATTGTTTATCTACTCGTCCTCTTGATTTGGTTGCACATATTTGGAATCCATATAATGACGCTTGGAATTTTGGACTTCGGGGAATTCTTAATGACAAGGAGTTTCTTGAATGGGCCAGTATCACATCTTCTTTCTTCGAATACTTTGAGAAATGTACAAGATTCTTGGTTTTGGTCATTGGATCCTTCACATGCCTTTACCGTTGATGGAAGATTTAGTGCATAAAAGGTCCAACTAAGAACAATCTTTTCTCGATAATTTGGAAGGACAAGTATCCAAGGAAAATCAAATTTTCTTATGGGACCTTAGCCATGGTGGAATTAATACAGCTGATAGACTACAAAGAAGAATGCTTGTGACCCCCAATTACTCAAATGCACCAACGTAAGGGCAAGAAAGGAATTGCATCGGGGAATTAGTTAGTTATGGGGAGGGCGTGAGAGTTGATCCTGTGGGGTCCACGGTAGTGTTTGGGAGTGAGGGCCTATATGGTTGGATAAAGGTCTTTTGTTAGTTTTTCATGTTTTTGAAGATTTTGCTTAGGAGAGTAAGGGAGAGAAAACCAACTTGCTTAATTGGTGGAAGTTTTTGTATTGCATTAGGGCTTCACTTTTCTTTGATTTCTCAATAATAGTAAGGGGATTCCTTCTTTCAACCTGGGGAAATCGAGGAACCAAAACAGAGGGATATGGAAGAAAGGATGGATTATGCCGATCGTGAGCGTCGAGCTCTAAGGGTATAGATGGAAGGAATTCATGAGAGAGTGTTGTGAATTCTATTAATGGAGGAGGGCATAACATCACTGAACAAATTGGTAGCAATGTTAGCAATAGAGCTGCGAACCCGGTCGAGGATCTCTGAGGTCAGTGATAACTCAACATTAAAGCAGAAAGGGTTGGAAGATTTGGGATTGTTGTCTTCGACTCAAGTGGAGGAAACTAAGGTCATTGCAGGAAGCCATGAGGAATCGATGGGAGATCGGAGCAAGTTTAAAAAAGTGGAGATGCCTATTTTCGGAGGAGAAGACCTGGATTCCTGGCTTTTTCGAGCCCGTTGGTATTTCCAGATTCATAAATATACTGATTCAGAGAAGATGACAATCACTGTCATTAGTTTCGAAGGGGTGTCGTTGAACTGCTGGAAGGAAGAAAGAGTGTCGTTCACTGGATGGGAAGATCTAAAACTTCGACTACTCGCACGCTTTAGAAAGGCCAAAAAAGGGAACGTGTTAAGTCGATTCTTAGCCGTCAAACAAGAAGGTATGGTATTGGAATATTGTAATGAATTTGAATTGCTAATGGCTCCGCTTGTGCAGCTGTCGAAGGACGTGATAGAGAACACCTTCATGAATGGTCTGAAATCGGTGATTAAGGCGGAGGTTCAGTGCCGACGGCTGGTAGGGCTTGACGATATGATGAAGACGACCCAATTGGTAGAAGATCGGGACCAAGCTCGCTTGGATAAACTTCGCAAGTTTAAAATAGGCCCAGCGAGCCCAAAAGGGGAACCCAAAACTCCAGATCCGGTTTAGTTAATGGTGTAAACCCACGACCCTTGGAATCGATAGCTATCAAAATGATAACGTTGACTGGAAATTCGACAATGACTGCAAGACGAGAGGGACCAACAAAAAGGTTGTCGGACACAAAATTTCAAAGTCGAAAAGAGTGAGGGCAGTGCCGCTGTGAGGATACACAGTAGGCCATAAGTGCAAAGCCAAAGAACTGAGAACCATGGTTGTTCAGGAGAACGGGGAAGAAATGGAAATCATTGATGGTGGGGTAGTCAACTCTGAGAAGGAAGCGAAGTTTACTGAGGAAGAGGGTGACGCCACCCATTTATCCTTGAATTCAGTAGTGGGAATGACGAATCCGGGAACAATCAAGCTAAAGGGAAAAGTGATGGACCAAGTGGTCATGGTGTTGATAGATTGCAGAGCAACTCACAATTTTATTGCTTAGAAGTCAGTCGATTTGCTGAAGTTACCTTTGACTGAAACAACAAATTATGGTATTATTATGGGAGGGGGAGTGGCGGTACAAGGGAAGAGAGTGTGTAAGGGCGTAGTAGTTAATATGGGAAAGATCACGGTGATTGAGAGTTTCCTGTCATTGGAATTGGGTGGCATTGATGTGATGCGGGAATGCAGTGGTTACATTACATACCTTGGGGGAAACGAGCATCCATTGGCCTACCTTAACGATTAAAATAGTAATGGGGGACGAGGAAATTGTTCTAAAGGGAGATCCCATCCCAACAAAGTCTCGAGTTTTGCTGAAAAAGATGATGAAGTCGTGGGAAGTAAGTGACCAAGGTTCCCTGGTGGAATTTAAAGCTATAGAGGTTGAGGACCATATAGAGGAAAGAAAGCAGGATCCATATCAAAGTGATTGTTCTCCAACCGTAGAAAAGTTGCTTGAGAAGTTTGATGATACTTTCCAATGGTCAGAAGGTTTACCACCAAAGAGGGAAATTGAACATCATATTCCCGTGAAAGAGGGATCTTATACGGTGAATGTGAGGCCTTATCGATATGCACAAGTACAGAAAGGGGAGATTGAGAGGTTGGTGAATGAAATGTTGCAAGCAGGAATCATACAACCCAACTCTAGCCTGTTCTCAAGTCCTGTGATATTAGTAAGAAAGAAAGATGGAGGATGACATTTTTGTGTGTATTATCGAGGACTCAATAGCGTAACCATCCCAGACAAGTTCCCAATTCCTATGGTAAAGGAGTTACTGGATGAATTGAATGGTTCGAGCATATATTCGGAGGTGGATCTGACATCGGGATATCACCAAATTAGAATGAATAATTCAGATATTGCAAAGACAACGTTTTGAACTCACAAGGGTCATTATGAGTTTTTAGTAATGCCATTTGGGCTAACAAATGCTCCATCCACATTCCAGGCATTGATGAATCAAATATTCCGACCTTACCTCCGTAAGTTTATTCTGGTTTTCTTTGACAATAGACTTATCTATAGTAGAAGCCACTGTGAACATCTGAAACACTTGACTATAGTTTTTGAGGTGCTTGACGAGAATAAGTAGTACGCCAACAAAAAAGACGTGCCAATTTACACGAACTAAAGTTGAATACTTAGGCCATTGGATATTTGAGGAGGGAGTAGAGGTCGAGGCAAGTAAAGTACAAGCAATGTGGCAATGGCCAGAGTCGAAGTCCATCAAAGACCTTAGAGGTTTTCTGGCTTTAATGGGATATTACCGTCGATTTGTGCAAAATTACGGTTCCATCGCAGCTCCTCTTATGAGTTTATTAAAAAGGGGGGGCGTATAAATGGAGTGACGAGGCAAGCAAAGCATTTGAACGTCGCAAGAGAGCGATGGTAACATTACCCGTGTTAGTATTACCTGATTTCAACCGACCTTTCACGATCGAACAGGGGTTGGGTTAAAGGTTGTTTTAAACCAGGGGGAACGTTCAATTGTGTTATGTAGTCAAACCTTGAGTCCATATATGAAAGAGAATTAATGACCATCGTCTTTAACGTGCAACATTGGCGACCATATTTACTAGGGGATAAATTCACGGTAAAAACTGATCAGAAAGCTCTTAAGTTCTTACTGGATCAGCATACTATCCAACCTTAGTATCATAAATGGGTGGCAAAACTATTGGGGTATGATTTTGAAGTTTAGTACAAGCCAAGTTTTCGGAACAAAACTGCTGATGCACTATCACGGCTACCCCAAAGAGCTCAATTGGCCCACATATCCATTCCCTTCATCTTAGATATCGAGAAGGTGTGAGAGAGGAGGTAGAGGCTGACCCCAAACTGCAACAAATCATAGCACGACTGCAGAGTGACGAGGATAGTGTTCCAAAATTCTCTTGGTCACTAGGGACTTTGTCGTATAAAGGGAGGTTAGTGATATCTAAATCATTGTCTTGAATCCCAGTTGTCCTCCACTCTTACCATGGCTCAGTTTTGGGTGGTCACTCGGGGTTCCGTATAAGCGACTCACCGGAGAACTATATTGGGAAGGCTTGAAGGTCGATACTAAGAATTATGTCGCTCAATGTATGATTTGCTAGAAAAATAAGACTTTGGTAGCATCTCTCGGATCGCATATGGGAGCATTTGTCAATGGATTTCATTGAGGGATTTTCCGGATTAGCAGGTTTGGATAAGATCATGGTAGTAGTCGATCGATCGAGTAAAATGACACATTTTGTAGTTTTAAAACCTCCTTTTACAATGAAGATAGTAGCTGAAAGTTTCATTAAAGAAATAGTTCGATTGCATGGGTACCCACGATCCATTGTTTCGGACAGAGACAAGGTATTCGTGAGTTACTTTTAGTCTGAACTATTTGGGGTACAAGACACAAAACTATGTAGAAGTACAACGTCTCACCCTCAATCGGATGGCCAAACTGAAATTGTGAACAAATGCGTGGAAGCTTGCGTTGTTTTTGCCGTGAAAAACCAAAAGAATGGAGTAAATGGTTACATTAGTACATTGGGCAGAATATGGTTACATTGGGCAGAATACTGGTATAATACCATGTATCACATATCCATTGGAGTTACACCTTTCCAAGCCGTCTATGGGTGACCTCCTCCATTATTGTCTTATGGAACTACTAGGACAACTAATGAAGCATTGGAACAACACTTAATGGATAGGGATGCCACTTTAGATGCCTTGAAAAGTCACTTGTGTTTGACTAGAGAGAGGATGAAGAAGTTTGCAGACAAACGGAGGTGCGAGGTCCAATATGAGGTAGGTGACATGGTTTTCTTGAAGCTCAGACCCTATTGTCAAGCATCATTAGCGAAGAAGAGGAATGAGAAATTTTCCCCGAAGTACTTTGGTCCTTACCAAATTGAGGAGAAGATTGGAGTAGTGGCTTATCGGCTTAAACTTCCACCTTCGGTATCATGCATCCGGTTTTTCACGTTTCACAGCTGAAACTAGCCATTGGTACTCAGCATGTTGTGCTAGAGGACCATCCCGAGCTGATTGATAATTTCGAATGGCTGGCAGAGCCAGTGAGACACGGGAGAAGATGAAGCCTTGATAAGTTGGAAAGGGCCTACTGGAGCATGAAGCAACTTGGGAACCTATATCGCACATGAGACAACAATTCCCTCTTTTCAATCTTGAGGACAAGGTTTCTTGGTACCAGGGGAGTAATGTGAGACCCCCAATTACTCAAGTGTACCAATGTAAGGGCAATAAAGGAATTGCACCGGGAATTAGTTAGTTATGGGGAGGGCGTGAGAGTTGATCCTGTGGGGTCCACTGTAGTGTTTGGGAGTGAGGCCCTACATGGTTAGATAGAGGTCTTTTGTTAGTTTTTCATGTTTTTGAAGATTTTGCTTAGGAGAGCAGAGGAGAGTAAACCAGCTTGCTTAATTGCTGGAAATTTTGTATTGCCTTAGGGCTTCACTTTTCTTTGATTTCTCAATAATAGTAAGAGGATTCCTTACAGAATGCCTTACTTCTTCCTCTCCATCTTATGGTGTGTTATGTGTTTTTTCAAAGGCGGAGTGTCCTATCCACCTTTTTGCATGTTGTTCTTTTGCTTCTCAGTATTGGTGCCCATTTGGTGGAAGCATTTGGTTGGCAATTGGTTTTTCCGGGAACTATATTTGATCTTCTTGCTTTAGTGTTTGTGGGACATCCTTTTCATGGGATTAAAAAGACTCTTTGGCTAGCCATCAATCGAGTATTCACTTGGTATATGTGGTGTGAGCATAATAATGACAGAATTTTCAGGGATGTTTCTTTAAGCTCTAGTGGTTTTATGAAATGAATTTTGTTCAACGCTTTTTATGGGTGTAAATGTAAACACCACTTTAGTGATTATAGTCTTTCTACTTTACTCTCCAATTAGACTTCTTTCTTGTAAGTCTCTTGTATCTAGGGTTTTGCCTCCTTTTATTTTATTTATCAATGAAATCGATCTCTTCTCAAAAAGAAAATTTACAATAAAAATTGTTAAAACAACTGGTATCCAGGTGCATCACATCAACTTGTGTAGTTTCTTTTCCATATGTGCTTTTTGCTACGCTTGTAATATTTGGTTTTTCACTGAATAAGGGTAGAGGCGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCCCTTGAGCGATGTCTCTTAGGAGGAAAAAGTGGTGCAGGTTTGACTCGGCACTAGAAAAGTAGATCGATGGTATTTGCTTCCTTTGTTTGGATCAGTGACTTTTGCCGTTGATAACAAACATGCTTTTTTTTTACCTCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTCGTAAGCTCAGATGGCAATCTTCTAGATGCCCTTGGTGCTGCCATTAAGGTATATTTTCATCCGTGACTTTTGTTTACTCTTCTATGTGTCATTTATGAACTTAAATAACCAGATTTTGCACTTATTGTTTATACTTCATAAGGCTGCATGACCATATAAGCTTTGCTTGTTTAACTAAAGCAATGTCGAATAAACATCAATATTATGTTCATGTATGGTCTGCTTATATCTGTCATTGTTTCTAACTGAGCAAGTCACTTTTGGCGACCGAAGTCCCTTGAGACTATTTGTCTCTTTCAATTTCAAGATTCTCGATAGTTTGTCCTTATATAGGACTCTACTAAAAGATATGAACCTTGATATTTTACTAGATCTTTTAATAATCACAGTTGCTATACAATATCCTGCTGGTAGTTAAAGCTGAAACTAATAAACCCCTCAAACTGTCCTTCCCAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATCAGCCAACGAACAACCCGAAGTTGACATAAGCGATGAAGAATTTCTACAGTTCGACACGTCCGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAGACACTACGTCGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCATTCTCCATATCCATCAACAGGCATGGTCACGTCTGTGGGTTGACCAAACGAGGGGGTGCCGGGGTTGATCCAAGCATAATCCTTGACATGATATCCGTGGGCAAACATGTGAGCGAGCAGCTACTAAACAAGTTGGATTCAGAGATAGCGGCTGCTGAAGCTGATGAAGAAGAATGATAAAGGTTTTAGATCAGATCTCTGATTGTTGTTCATTTACATAGTGGAATCTTAGAATAACCATCTGAATTGGAATTCTAGTCTAGATGGTATAGATGATTGTAAGGCAGTGAGCTTGTAAAATTAGCAGTTTTTTTAGTCATTTGGTTCTGTCATGGCATTTGATCCCAGTTTAATTGTGTTCAATATGAGAAAATGCAGGGCAGATGTTGAATCACGTGTAATTGCAGCTAGACATTATGAATTTAGACAACTTATTTCATAGAACTATTCATGATACCTTAGAAATGGGAGCAAATTGAGGTTGTTGATTT

mRNA sequence

GAGACCTGAATCAACCTAATTAGGTCGATTTAATTCAGGTTGTAGACAATCTGGATAGTGCACAGTCTCAAACTTTCGTCTTCTCCTTTCATGTTGTACGATTTTAGCCAAGGAGGAACTGGCGAGTAGAGACGTTCTGGTAAGGAACCTTATCGGCTTGCTTTAGGAGCGCGCAAGAAGTTTAGTTTTGCAGCCTTCAACTCTCACTCTCTCTCGAACTCACTCCAAAGGTAAACGCTGAAGGCCTGTTGCCAGCGAAGCAGCAACAGTCGTCACCGCCCCCTCCCAACGCCACCGTCATCATTCGAGTCGCGCCATCGTTTCTTTTCCTAAAAAGTAGGAATGGTGGGGCTTTCTACGGGAGAAAAGCTTTTCATACAAGGCGGTATTGCTCAGGACCTTCGCACAGATGGTCGAAAGAGACTAACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGCGGCACTGAAGTTATTGCTACTGTCAAGGCTGAACTTGGAAGGCCTAATGCGTTGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGCAGCCCGATTGCGGAGCCAGCGTTTGAGGGTAGAGGCGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCCCTTGAGCGATGTCTCTTAGGAGGAAAAAGTGGTGCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTCGTAAGCTCAGATGGCAATCTTCTAGATGCCCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATCAGCCAACGAACAACCCGAAGTTGACATAAGCGATGAAGAATTTCTACAGTTCGACACGTCCGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAGACACTACGTCGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCATTCTCCATATCCATCAACAGGCATGGTCACGTCTGTGGGTTGACCAAACGAGGGGGTGCCGGGGTTGATCCAAGCATAATCCTTGACATGATATCCGTGGGCAAACATGTGAGCGAGCAGCTACTAAACAAGTTGGATTCAGAGATAGCGGCTGCTGAAGCTGATGAAGAAGAATGATAAAGGTTTTAGATCAGATCTCTGATTGTTGTTCATTTACATAGTGGAATCTTAGAATAACCATCTGAATTGGAATTCTAGTCTAGATGGTATAGATGATTGTAAGGCAGTGAGCTTGTAAAATTAGCAGTTTTTTTAGTCATTTGGTTCTGTCATGGCATTTGATCCCAGTTTAATTGTGTTCAATATGAGAAAATGCAGGGCAGATGTTGAATCACGTGTAATTGCAGCTAGACATTATGAATTTAGACAACTTATTTCATAGAACTATTCATGATACCTTAGAAATGGGAGCAAATTGAGGTTGTTGATTT

Coding sequence (CDS)

ATGGTGGGGCTTTCTACGGGAGAAAAGCTTTTCATACAAGGCGGTATTGCTCAGGACCTTCGCACAGATGGTCGAAAGAGACTAACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGCGGCACTGAAGTTATTGCTACTGTCAAGGCTGAACTTGGAAGGCCTAATGCGTTGCAGCCTGACAAAGGGAAGGTTTCGATCTCTGTTGATTGCAGCCCGATTGCGGAGCCAGCGTTTGAGGGTAGAGGCGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCCCTTGAGCGATGTCTCTTAGGAGGAAAAAGTGGTGCAGGGGCTGGGATTGACCTTTCATCTCTGATAGTTGTGGAAGGGAAGCTTTGCTGGGATCTTTATATTGAGGGCCTTGTCGTAAGCTCAGATGGCAATCTTCTAGATGCCCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTCCATGTTGCTGCAGAAGCATCAGCCAACGAACAACCCGAAGTTGACATAAGCGATGAAGAATTTCTACAGTTCGACACGTCCGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAGACACTACGTCGTGGATGCTACTTTGGAAGAGGAATCTCAAATGAGCTCTGCATTCTCCATATCCATCAACAGGCATGGTCACGTCTGTGGGTTGACCAAACGAGGGGGTGCCGGGGTTGATCCAAGCATAATCCTTGACATGATATCCGTGGGCAAACATGTGAGCGAGCAGCTACTAAACAAGTTGGATTCAGAGATAGCGGCTGCTGAAGCTGATGAAGAAGAATGA

Protein sequence

MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCGLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE

Homology

[Close]

BLAST of Tan0020096 vs. ExPASy Swiss-Prot
Match: Q15024 (Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-51
Identity = 112/281 (39.86%), Postives = 167/281 (59.43%), Query Frame = 0


Query: 2   VGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGR    YR + VETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAG 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 181
           +DL +L +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +   ++
Sbjct: 124 VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSK 183

Query: 182 QPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCG 241
             E+     + ++     VP IVTL K+G  +VVDATL+EE+   ++  +S+   G V  
Sbjct: 184 DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTC 243

Query: 242 LTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEA 283
           + K G   +DP  I +M+  GK V + L   L S +   E+
Sbjct: 244 MRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 279

[Close]

BLAST of Tan0020096 vs. ExPASy Swiss-Prot
Match: Q9D0M0 (Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 3.9e-50
Identity = 112/281 (39.86%), Postives = 165/281 (58.72%), Query Frame = 0


Query: 2   VGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           V LS  EK++I  G+ +DLR DGR    YR + VETDV+S  +GSARV++G T+++  VK
Sbjct: 4   VALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVK 63

Query: 62  AELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAG 121
           AE+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS     
Sbjct: 64  AEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKS----S 123

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 181
           +DL SL +   + CW LY++ L++   GNL DA+  A+KAAL NT IP+V V  +    +
Sbjct: 124 VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAK 183

Query: 182 QPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCG 241
             E+     + ++     VP IVTL K+G  +VVDATL+EE+   ++  +S+   G V  
Sbjct: 184 DIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTC 243

Query: 242 LTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEA 283
           + K G   +DP  I +M+   K V + L   L S +   E+
Sbjct: 244 MRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQSLLHKEES 279

[Close]

BLAST of Tan0020096 vs. ExPASy Swiss-Prot
Match: Q54VM4 (Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 GN=exosc7 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.2e-44
Identity = 115/319 (36.05%), Postives = 160/319 (50.16%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M  +S  E LFIQ G+  ++R+DGR R+ YR  ++ET  I  ANGSARV++  TEV+  V
Sbjct: 1   MQKISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGV 60

Query: 61  KAELGR------PNALQPDKGK-VSISVDCSPIAEPAFEGRGGEELSTELSVALERCLL- 120
           KAE+         N  Q D  K +  SV+C P A P FEG+G E L+ ELS  LER    
Sbjct: 61  KAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSH 120

Query: 121 ----------------------------GGKSGAGAGI------DLSSLIVVEGKLCWDL 180
                                        GK     G       D +   +V GK  W L
Sbjct: 121 PNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNCFSIVSGKYYWTL 180

Query: 181 YIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTS 240
           Y++ +V+ SDGNL DAL  A ++AL NT IP+V            EV    E+ L     
Sbjct: 181 YVDAIVLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEYEEITFEVSDDPEDTLSLSID 240

Query: 241 GVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCGLTKRGGAGVDPSIILDM 278
            VP  VTLTK+G  +V+D TL+EE  M++  ++ +N   ++C + K G  G+DP+ I  M
Sbjct: 241 NVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDPTTINQM 300

[Close]

BLAST of Tan0020096 vs. ExPASy Swiss-Prot
Match: O26778 (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rrp42 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.7e-34
Identity = 86/257 (33.46%), Postives = 133/257 (51.75%), Query Frame = 0


Query: 21  RTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNALQPDKGKVSIS 80
           R DGR    +R IS+ET VIS+A GS+RV++G T++I  VK ++G P    P+ G +  +
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 81  VDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYI 140
            +  P+A P FE    +E S ELS  ++RC+   +      IDL  L ++EG   W L++
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRM-----IDLEKLCIIEGSKVWMLFL 144

Query: 141 EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTSGV 200
           +  ++  DGNL DA   A  AAL +T IP   V       E  EV I+ E+      +  
Sbjct: 145 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPVNRK 204

Query: 201 PAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCGLTKRGGAGVDPSIILDMIS 260
             + T  K+G   V+D +LEEE  +++  SI +   G +C + K G   +    +L  +S
Sbjct: 205 ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVS 264

Query: 261 VGKHVSEQLLNKLDSEI 278
           +      QL+  LD  +
Sbjct: 265 IAVEKVPQLIEYLDKSM 269

[Close]

BLAST of Tan0020096 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.6e-33
Identity = 87/258 (33.72%), Postives = 142/258 (55.04%), Query Frame = 0


Query: 21  RTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNALQPDKGKVSIS 80
           R DGR    +RPI V   VIS+ANGSA VR+G T+++  VK E+GRP    P++G ++++
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 81  VDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGIDLSSLIVVEGKLCWDLYI 140
            +  P+A+P+FE    +E + ELS  ++R +   +      IDL  L + EG+ CW  ++
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEM-----IDLEELCIEEGEHCWVTFV 142

Query: 141 EGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTSGV 200
           +  V+  DGNL DA      +ALS T +PK  V  +       EV++ +E+      +  
Sbjct: 143 DIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDD-------EVEVMEEDTEPLAINDF 202

Query: 201 PAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCGLTKRGGAGVDPSIIL-DMI 260
           P  VT+ KVG + +VD  LEEE  M +  ++++   G VC + K G  G  P  +L D I
Sbjct: 203 PISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDFPEHLLEDAI 262

Query: 261 SVGKHVSEQLLNKLDSEI 278
            +    +E++   + +++
Sbjct: 263 DLATKKAEEVRRTVKAQL 267

[Close]

BLAST of Tan0020096 vs. NCBI nr
Match: XP_023529361.1 (exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exosome complex component RRP42 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 526.9 bits (1356), Expect = 1.1e-145
Identity = 270/286 (94.41%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQGGIAQDLRTDGR+RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+AEASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRHGHVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096 vs. NCBI nr
Match: XP_022927940.1 (exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome complex component RRP42 [Cucurbita moschata])

HSP 1 Score: 525.4 bits (1352), Expect = 3.1e-145
Identity = 269/286 (94.06%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQGGIAQDLRTDGR+RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+ EASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRHGHVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096 vs. NCBI nr
Match: KAG6588778.1 (Exosome complex component RRP42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 525.0 bits (1351), Expect = 4.0e-145
Identity = 269/286 (94.06%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQGGIAQDLRTDGR+RL YRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 80  MKGLSVGEKLFIQGGIAQDLRTDGRRRLNYRPISVETDVISQANGSARVRMGGTEVIATV 139

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSGAGA
Sbjct: 140 KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 199

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+AEASAN
Sbjct: 200 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 259

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRHGHVC
Sbjct: 260 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 319

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 320 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 365

[Close]

BLAST of Tan0020096 vs. NCBI nr
Match: XP_022988876.1 (exosome complex component RRP42 [Cucurbita maxima] >XP_022988877.1 exosome complex component RRP42 [Cucurbita maxima])

HSP 1 Score: 521.2 bits (1341), Expect = 5.8e-144
Identity = 267/286 (93.36%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFI+GGIAQDLRTDGR+RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIEGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSV+LERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVSLERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+AEASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRH HVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHCHVC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096 vs. NCBI nr
Match: XP_004151651.2 (exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 exosome complex component RRP42 [Cucumis sativus] >XP_011656329.1 exosome complex component RRP42 [Cucumis sativus] >XP_031737840.1 exosome complex component RRP42 [Cucumis sativus] >KGN63566.1 hypothetical protein Csa_013213 [Cucumis sativus])

HSP 1 Score: 520.4 bits (1339), Expect = 9.9e-144
Identity = 266/286 (93.01%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPN +QPDKGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSS+GNLLDALGAAIKAALSNTGIPKVHVAAEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVPAIVTLTKVG+HY+VDATLEEESQMSSA SISI+RHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGG GVDPSIILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of Tan0020096 vs. ExPASy TrEMBL
Match: A0A6J1EQ99 (exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 1.5e-145
Identity = 269/286 (94.06%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFIQGGIAQDLRTDGR+RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+ EASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASAN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRHGHVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096 vs. ExPASy TrEMBL
Match: A0A6J1JIH0 (exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 2.8e-144
Identity = 267/286 (93.36%), Postives = 278/286 (97.20%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           M GLS GEKLFI+GGIAQDLRTDGR+RLTYRPISVETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MKGLSVGEKLFIEGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSI VDCSP AEP FEGRGGEEL+TELSV+LERCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVSLERCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKV+V+AEASAN
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASAN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQMSSA SIS+NRH HVC
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHCHVC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGGAGVDPS+ILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GLTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096 vs. ExPASy TrEMBL
Match: A0A0A0LU91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 4.8e-144
Identity = 266/286 (93.01%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPN +QPDKGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLVVSS+GNLLDALGAAIKAALSNTGIPKVHVAAEA  N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEFLQFDTSGVPAIVTLTKVG+HY+VDATLEEESQMSSA SISI+RHGH+C
Sbjct: 181 EQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHIC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGG GVDPSIILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of Tan0020096 vs. ExPASy TrEMBL
Match: A0A6J1C1R4 (exosome complex component RRP42 OS=Momordica charantia OX=3673 GN=LOC111007665 PE=4 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.4e-143
Identity = 266/286 (93.01%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLS GEK FIQGGIAQDLR+DGR RLTYRPISVETDVISQANGSARV+MGGTEVIA V
Sbjct: 1   MVGLSIGEKQFIQGGIAQDLRSDGRTRLTYRPISVETDVISQANGSARVKMGGTEVIAAV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPNA+QPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVAL+RCLLGGKSGAGA
Sbjct: 61  KAELGRPNAMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALQRCLLGGKSGAGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGK+CWDLYIEGLVVSS+GNLLD LGAAIKAALSNTGIPKV+VAAEASA+
Sbjct: 121 GIDLSSLIVVEGKICWDLYIEGLVVSSNGNLLDTLGAAIKAALSNTGIPKVNVAAEASAD 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           +QPEVDISDEEFLQFDTSGVP IVTLTKVGRHY+VDATLEEESQM+SA SISINRHGH+C
Sbjct: 181 DQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMNSAISISINRHGHIC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           G+TKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE
Sbjct: 241 GVTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of Tan0020096 vs. ExPASy TrEMBL
Match: A0A1S3B3T5 (exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=4 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.4e-142
Identity = 261/286 (91.26%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MVGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATV 60
           MVGLSTGEKLFIQ GIAQDLRTDGR RLTYRPIS+ETDVISQANGSARVRMGGTEVIATV
Sbjct: 1   MVGLSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATV 60

Query: 61  KAELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGA 120
           KAELGRPN +Q +KGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSG+GA
Sbjct: 61  KAELGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGA 120

Query: 121 GIDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN 180
           GIDLSSLIVVEGKLCWDLYIEGLV+SS+GNLLDALGAAIKAALSNTGIPKVH+AAEAS N
Sbjct: 121 GIDLSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGN 180

Query: 181 EQPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVC 240
           EQPEVD+SDEEF+QF+TSGVPAIVTLTKVG+HY++DATLEEESQMSSA SISINRHGH+C
Sbjct: 181 EQPEVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHIC 240

Query: 241 GLTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           GLTKRGG GVDPSIILDMISVGK+VSE+LLNKLDSEI AAE DEEE
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of Tan0020096 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 448.7 bits (1153), Expect = 3.4e-126
Identity = 222/285 (77.89%), Postives = 262/285 (91.93%), Query Frame = 0


Query: 2   VGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           +GLS GE+ FI+GGIAQDLRTDGRKRLTYRPI VET VI QANGSARVR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAG 121
           AE+GRP++LQPDKGKV++ +DCSP AEP F GRGGEELS+EL++AL+RCLLGGKSGAGAG
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 181
           I+LSSL++ EGK+CWDLYI+GLV+SSDGNLLDALGAAIKAAL+NT IPKV+V+AE + +E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCG 241
           QPE+DISDEE+LQFDTS VP IVTLTKVG HY+VDAT EEESQMSSA SIS+NR GH+CG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           LTKR G+G+DPS+ILDMISV KHV+E L++KLDSEI+AAEA E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of Tan0020096 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 448.7 bits (1153), Expect = 3.4e-126
Identity = 222/285 (77.89%), Postives = 262/285 (91.93%), Query Frame = 0


Query: 2   VGLSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61
           +GLS GE+ FI+GGIAQDLRTDGRKRLTYRPI VET VI QANGSARVR+GGT+VIA+VK
Sbjct: 1   MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60

Query: 62  AELGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAG 121
           AE+GRP++LQPDKGKV++ +DCSP AEP F GRGGEELS+EL++AL+RCLLGGKSGAGAG
Sbjct: 61  AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120

Query: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 181
           I+LSSL++ EGK+CWDLYI+GLV+SSDGNLLDALGAAIKAAL+NT IPKV+V+AE + +E
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180

Query: 182 QPEVDISDEEFLQFDTSGVPAIVTLTKVGRHYVVDATLEEESQMSSAFSISINRHGHVCG 241
           QPE+DISDEE+LQFDTS VP IVTLTKVG HY+VDAT EEESQMSSA SIS+NR GH+CG
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240

Query: 242 LTKRGGAGVDPSIILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 287
           LTKR G+G+DPS+ILDMISV KHV+E L++KLDSEI+AAEA E+E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of Tan0020096 vs. TAIR 10
Match: AT3G12990.1 (ribonuclease PH45A )

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-26
Identity = 80/258 (31.01%), Postives = 131/258 (50.78%), Query Frame = 0


Query: 4   LSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F++  +  +LR DGR    YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGID 123
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN--- 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 184 EQPEVDISDEEFLQFDTSGVPAIVT--LTKVGRHYVVDATLEEESQMSSAFSISINRHGH 243
             PE    + E L      +P   T      G   V+D T  EE+ M    ++++N +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 VCGLTKRGGAGVDPSIIL 257
           +C + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Tan0020096 vs. TAIR 10
Match: AT3G12990.2 (ribonuclease PH45A )

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-26
Identity = 80/258 (31.01%), Postives = 131/258 (50.78%), Query Frame = 0


Query: 4   LSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F++  +  +LR DGR    YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGID 123
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN--- 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 184 EQPEVDISDEEFLQFDTSGVPAIVT--LTKVGRHYVVDATLEEESQMSSAFSISINRHGH 243
             PE    + E L      +P   T      G   V+D T  EE+ M    ++++N +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 VCGLTKRGGAGVDPSIIL 257
           +C + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of Tan0020096 vs. TAIR 10
Match: AT3G12990.3 (ribonuclease PH45A )

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-26
Identity = 80/258 (31.01%), Postives = 131/258 (50.78%), Query Frame = 0


Query: 4   LSTGEKLFIQGGIAQDLRTDGRKRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63
           L+  E  F++  +  +LR DGR    YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 64  LGRPNALQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGAGAGID 123
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 124 LSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVHVAAEASAN--- 183
             SL V+ GKL W + I+  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 184 EQPEVDISDEEFLQFDTSGVPAIVT--LTKVGRHYVVDATLEEESQMSSAFSISINRHGH 243
             PE    + E L      +P   T      G   V+D T  EE+ M    ++++N +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 244 VCGLTKRGGAGVDPSIIL 257
           +C + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

The following BLAST results are available for this feature:

BLAST of Tan0020096 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15024	1.6e-51	39.86	Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3	[more]
Q9D0M0	3.9e-50	39.86	Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2	[more]
Q54VM4	4.2e-44	36.05	Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 ...	[more]
O26778	8.7e-34	33.46	Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai...	[more]
Q8TYC2	9.6e-33	33.72	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]

BLAST of Tan0020096 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529361.1	1.1e-145	94.41	exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exo...	[more]
XP_022927940.1	3.1e-145	94.06	exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome com...	[more]
KAG6588778.1	4.0e-145	94.06	Exosome complex component RRP42, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022988876.1	5.8e-144	93.36	exosome complex component RRP42 [Cucurbita maxima] >XP_022988877.1 exosome compl...	[more]
XP_004151651.2	9.9e-144	93.01	exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 exosome comple...	[more]

BLAST of Tan0020096 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQ99	1.5e-145	94.06	exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE...	[more]
A0A6J1JIH0	2.8e-144	93.36	exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4...	[more]
A0A0A0LU91	4.8e-144	93.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1	[more]
A0A6J1C1R4	1.4e-143	93.01	exosome complex component RRP42 OS=Momordica charantia OX=3673 GN=LOC111007665 P...	[more]
A0A1S3B3T5	3.4e-142	91.26	exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=...	[more]

BLAST of Tan0020096 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07750.1	3.4e-126	77.89	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	3.4e-126	77.89	3'-5'-exoribonuclease family protein	[more]
AT3G12990.1	2.3e-26	31.01	ribonuclease PH45A	[more]
AT3G12990.2	2.3e-26	31.01	ribonuclease PH45A	[more]
AT3G12990.3	2.3e-26	31.01	ribonuclease PH45A	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 263..286
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 1..284
None	No IPR available	PANTHER	PTHR11097:SF30	BNAA05G29900D PROTEIN	coord: 1..284
None	No IPR available	CDD	cd11367	RNase_PH_RRP42	coord: 4..275 e-value: 1.35352E-123 score: 351.898
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 3..286 e-value: 1.8E-81 score: 275.7
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 200..263 e-value: 1.1E-8 score: 35.0
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 30..169 e-value: 1.1E-27 score: 97.1
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 196..281
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 4..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0020096.1	Tan0020096.1	mRNA
Tan0020096.2	Tan0020096.2	mRNA
Tan0020096.3	Tan0020096.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034476	U5 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)