Tan0018660.1 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATAAAAGCTCAAAGCTACGACGTTTAGGTCAAGAACTGGGAAAAAAGGGAAGGATCTGAAAAATCATTTCTTGAGCAAAGGGAAAAGAAGAGTTCTACTAAAGCAGTCGAAAGACTCAAACCTCGCGCCTCGCTGCAACGCTCGATTCTGTTCTCAATCCATTTGGCTGAAAGTTAATCGATCCGAATATGAGTGTAAGTACATCAGCTCAAACCCAAATTCTCTATTCTTCTTTACATTCCGATTCTAACATTTATCGATCTCCCGTTTTTTCAATGCAGCCCGTTGATTCCAACCAGGCGAACCATGGTCTTCTCTGCCCCGAAGCTCCAATTCAAAGAACCCAGTACGTTTTCTCTCTTTCTGTTTGATGCTTTTTGGTTAGACTATAAGTTTTATGTTCTAGAATTGGGAGTTTTGGGGTTTTAAAGACCTAAGATTTTCGGATTTGGAGCTGAACGGTGAATGAATGGCGAAGTCTAGGTTTTTGAATCGGCTGAACATTTGAACTGGTAAATGTTTGTTTATAACTTCTGTTGTCGAATAGGTATCCCTACGTGACTGGTACATCCGTGGTTGCCATCAAATACAAAGATGGGATTTTAATGGTTGCCGATTTGGGAGGTCAGTGGAAAATCTTTTCCATTTTATGGCTTCAACATCTAATTAACTGTCCGTTCTATTATGTCTATGACTTTCAACAATGCTTTGAAAGAAGGTTGATGAAGATTGTCATGATGGAATTGTCTGTATTACTTATATGATGCTTTAACTACAGGCTCCTATGGTTCCACATTGCGGTATAAGAGTGTGGAGCGAATCAAAGCTATTGGAAAACATTCTCTACTTGGTGCAAGTGGAGAAATTAGTGATTTTCAGGAGTTGTTGCGAAATCTTGACGAGCTCATGTAAGCCTAAGTTGGTTTGCTATAGTCTCACTCTTCTCTATATATATGTTCGATTGCAGATGAATTGTGTTCTGGATTAAAATTCAGTTGCTTGTATTGTGGATCTATTTTGATTGAGAAGTTGAGTGAAATCTCTTATTGTATTGAATGGTGCAGCTTGTATGACAACATGTGGGATGATGGTAATGCTCTTGGGCCCAAGGAGATTCATAGCTACTTGACTCGAGTGATGTATAACAGGCGGAACAAGTTCAACCCACTTTGGAACTCACTTGTTCTTGGTGGAGTAAAGAATGGGAAAAAGTATCTTGGCACGGTAGATCTTTGGTTCTCTTCTCACTGATTCAAATAATTGTAAATTTAGATGCTTCATCAGCTAACAGTTTACCGTTTGTATTCAGGTTAATATGATAGGTGTAAATTTTGAAGATGAACATGTTACTACTGGTTTTGGCAACCACCTTGCACGGCCAATTCTTCGTGACGAGTGGCATGAGAACCTAACTTTTGAAGAAGGTGTGAAATTGCTGGAGAAATGCATGAGGGTCCTCTTGTACCGTGATAGGTCTGCTGTCAACAAGCTCCAGGTTTGGATCTTTTTAGAGCTACATTTATCACTTTCATTTTCATATATATTTGCGAGTTTCCAGTTGATTTATGTCCACATCCACTAGTCTCACTGGATAACCATCCAACACTGTAACCATTTGGTTGTGAAAGTCATAAGATTTTAATATCATAGAGAGTTTGCCACTATGGGATTTGAACCTATTCTCCCCAAGTTCCTTTATTTTTTTTAATCTTGTCTTTAATTATCACTAGACCAACCTTGTGGCATGTTTGGTTTTTTACTGTTCAGTGGGGTATTTGGCTGGGGAGGAATTTAAAGATTTTTTGAGGGGTGGAGAGATCTTGGAAGGAAGTTTGGGAGGTCTTTAGGTTTGATGCTTCTTTATAGGTGTCTGCCCATCATGCTTTTTTAATTATTGGCTTGATATAATTCTTTTGGATTGGAATCCCTTTTGTAATTAGTTTTGGAGTTCCTTTTGTAGTCTTGTCTTTTGTATGCCCTTGTACAAAAGTTCATTCAAATATGAATACTTGTACAATGAAGCTTAGCGAGAAGCATATGACCTCCGAAAACATCTAGATTATTCTTTCATTTTTCTCAATGGAAGTTTGGTTTCTTAAAAGTTAAATATATATGTCTATCACGAACCCAACCTATCCCATGTTGGTTCACTGATTATAGCTACATCCACCACCATCTCCCTTCTAGTTTCTGGGACCTGTGTTTTGTTCACTGATTATAGACTTCAATGACTGGTGTTATTCACATCATCTCATGCATTTGAAATTTGGAATTCTTGCAGATAGCAAAAATAACTGAAGAAGGTGTGACAATCTCCCAACCCTACTCTTTGAAAACATTCTGGAACTATGCTGCTTTTGAGAATCCAACTTCTGGTGCTGAAGGGTCATGGTAGATTGAAGCTACCTTGTTTATCTCAGATTCCATTTCCGCAAATCGCTCGTCGGATCAAGAGATGTGAAACAATTGACATATCATTAGATGCGTCTTAGATACTTGTTCTTACTTTGGATTTGTATGGAATGTTTACTTGAACTATCTGTTTATATCCAACTCAGTGCATGTTGAGTTGATTTTCTTGACTTTTTTATAATCACAATCAGTTGCTTTTTCATTATTAGTCTGCCTACTTAATTGCTTGACATGGTTTGATTCAAATGAAGTAAAGGCACTCTGGTTTGTTGTGGGAA AATAAAAGCTCAAAGCTACGACGTTTAGGTCAAGAACTGGGAAAAAAGGGAAGGATCTGAAAAATCATTTCTTGAGCAAAGGGAAAAGAAGAGTTCTACTAAAGCAGTCGAAAGACTCAAACCTCGCGCCTCGCTGCAACGCTCGATTCTGTTCTCAATCCATTTGGCTGAAAGTTAATCGATCCGAATATGAGTCCCGTTGATTCCAACCAGGCGAACCATGGTCTTCTCTGCCCCGAAGCTCCAATTCAAAGAACCCAGTATCCCTACGTGACTGGTACATCCGTGGTTGCCATCAAATACAAAGATGGGATTTTAATGGTTGCCGATTTGGGAGGCTCCTATGGTTCCACATTGCGGTATAAGAGTGTGGAGCGAATCAAAGCTATTGGAAAACATTCTCTACTTGGTGCAAGTGGAGAAATTAGTGATTTTCAGGAGTTGTTGCGAAATCTTGACGAGCTCATCTTGTATGACAACATGTGGGATGATGGTAATGCTCTTGGGCCCAAGGAGATTCATAGCTACTTGACTCGAGTGATGTATAACAGGCGGAACAAGTTCAACCCACTTTGGAACTCACTTGTTCTTGGTGGAGTAAAGAATGGGAAAAAGTATCTTGGCACGGTTAATATGATAGGTGTAAATTTTGAAGATGAACATGTTACTACTGGTTTTGGCAACCACCTTGCACGGCCAATTCTTCGTGACGAGTGGCATGAGAACCTAACTTTTGAAGAAGGTGTGAAATTGCTGGAGAAATGCATGAGGGTCCTCTTGTACCGTGATAGGTCTGCTGTCAACAAGCTCCAGATAGCAAAAATAACTGAAGAAGGTGTGACAATCTCCCAACCCTACTCTTTGAAAACATTCTGGAACTATGCTGCTTTTGAGAATCCAACTTCTGGTGCTGAAGGGTCATGGTAGATTGAAGCTACCTTGTTTATCTCAGATTCCATTTCCGCAAATCGCTCGTCGGATCAAGAGATGTGAAACAATTGACATATCATTAGATGCGTCTTAGATACTTGTTCTTACTTTGGATTTGTATGGAATGTTTACTTGAACTATCTGTTTATATCCAACTCAGTGCATGTTGAGTTGATTTTCTTGACTTTTTTATAATCACAATCAGTTGCTTTTTCATTATTAGTCTGCCTACTTAATTGCTTGACATGGTTTGATTCAAATGAAGTAAAGGCACTCTGGTTTGTTGTGGGAA ATGAGTCCCGTTGATTCCAACCAGGCGAACCATGGTCTTCTCTGCCCCGAAGCTCCAATTCAAAGAACCCAGTATCCCTACGTGACTGGTACATCCGTGGTTGCCATCAAATACAAAGATGGGATTTTAATGGTTGCCGATTTGGGAGGCTCCTATGGTTCCACATTGCGGTATAAGAGTGTGGAGCGAATCAAAGCTATTGGAAAACATTCTCTACTTGGTGCAAGTGGAGAAATTAGTGATTTTCAGGAGTTGTTGCGAAATCTTGACGAGCTCATCTTGTATGACAACATGTGGGATGATGGTAATGCTCTTGGGCCCAAGGAGATTCATAGCTACTTGACTCGAGTGATGTATAACAGGCGGAACAAGTTCAACCCACTTTGGAACTCACTTGTTCTTGGTGGAGTAAAGAATGGGAAAAAGTATCTTGGCACGGTTAATATGATAGGTGTAAATTTTGAAGATGAACATGTTACTACTGGTTTTGGCAACCACCTTGCACGGCCAATTCTTCGTGACGAGTGGCATGAGAACCTAACTTTTGAAGAAGGTGTGAAATTGCTGGAGAAATGCATGAGGGTCCTCTTGTACCGTGATAGGTCTGCTGTCAACAAGCTCCAGATAGCAAAAATAACTGAAGAAGGTGTGACAATCTCCCAACCCTACTCTTTGAAAACATTCTGGAACTATGCTGCTTTTGAGAATCCAACTTCTGGTGCTGAAGGGTCATGGTAG MSPVDSNQANHGLLCPEAPIQRTQYPYVTGTSVVAIKYKDGILMVADLGGSYGSTLRYKSVERIKAIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNALGPKEIHSYLTRVMYNRRNKFNPLWNSLVLGGVKNGKKYLGTVNMIGVNFEDEHVTTGFGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGVTISQPYSLKTFWNYAAFENPTSGAEGSW Homology
BLAST of Tan0018660.1 vs. ExPASy Swiss-Prot
Match: Q7DLR9 (Proteasome subunit beta type-4 OS=Arabidopsis thaliana OX=3702 GN=PBG1 PE=1 SV=2) HSP 1 Score: 412.9 bits (1060), Expect = 2.5e-114 Identity = 192/243 (79.01%), Postives = 220/243 (90.53%), Query Frame = 0
BLAST of Tan0018660.1 vs. ExPASy Swiss-Prot
Match: Q3T108 (Proteasome subunit beta type-4 OS=Bos taurus OX=9913 GN=PSMB4 PE=1 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 7.6e-55 Identity = 105/233 (45.06%), Postives = 161/233 (69.10%), Query Frame = 0
BLAST of Tan0018660.1 vs. ExPASy Swiss-Prot
Match: P99026 (Proteasome subunit beta type-4 OS=Mus musculus OX=10090 GN=Psmb4 PE=1 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 1.7e-54 Identity = 100/218 (45.87%), Postives = 154/218 (70.64%), Query Frame = 0
BLAST of Tan0018660.1 vs. ExPASy Swiss-Prot
Match: P28070 (Proteasome subunit beta type-4 OS=Homo sapiens OX=9606 GN=PSMB4 PE=1 SV=4) HSP 1 Score: 212.2 bits (539), Expect = 6.5e-54 Identity = 99/216 (45.83%), Postives = 153/216 (70.83%), Query Frame = 0
BLAST of Tan0018660.1 vs. ExPASy Swiss-Prot
Match: P34067 (Proteasome subunit beta type-4 OS=Rattus norvegicus OX=10116 GN=Psmb4 PE=1 SV=2) HSP 1 Score: 211.8 bits (538), Expect = 8.4e-54 Identity = 99/219 (45.21%), Postives = 153/219 (69.86%), Query Frame = 0
BLAST of Tan0018660.1 vs. NCBI nr
Match: KAG7010616.1 (Proteasome subunit beta type-4 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 499.6 bits (1285), Expect = 1.5e-137 Identity = 240/245 (97.96%), Postives = 244/245 (99.59%), Query Frame = 0
BLAST of Tan0018660.1 vs. NCBI nr
Match: XP_022948016.1 (proteasome subunit beta type-4-like isoform X1 [Cucurbita moschata] >XP_023532284.1 proteasome subunit beta type-4-like [Cucurbita pepo subsp. pepo] >KAG7035465.1 Proteasome subunit beta type-4 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 498.8 bits (1283), Expect = 2.6e-137 Identity = 239/245 (97.55%), Postives = 244/245 (99.59%), Query Frame = 0
BLAST of Tan0018660.1 vs. NCBI nr
Match: XP_023512002.1 (proteasome subunit beta type-4-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 498.4 bits (1282), Expect = 3.4e-137 Identity = 239/245 (97.55%), Postives = 244/245 (99.59%), Query Frame = 0
BLAST of Tan0018660.1 vs. NCBI nr
Match: XP_022986112.1 (proteasome subunit beta type-4-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 496.9 bits (1278), Expect = 1.0e-136 Identity = 239/245 (97.55%), Postives = 243/245 (99.18%), Query Frame = 0
BLAST of Tan0018660.1 vs. NCBI nr
Match: XP_008463921.1 (PREDICTED: proteasome subunit beta type-4 [Cucumis melo] >KAA0035321.1 proteasome subunit beta type-4 [Cucumis melo var. makuwa] >TYK14317.1 proteasome subunit beta type-4 [Cucumis melo var. makuwa]) HSP 1 Score: 496.9 bits (1278), Expect = 1.0e-136 Identity = 238/245 (97.14%), Postives = 243/245 (99.18%), Query Frame = 0
BLAST of Tan0018660.1 vs. ExPASy TrEMBL
Match: A0A6J1G834 (Proteasome subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111451719 PE=3 SV=1) HSP 1 Score: 498.8 bits (1283), Expect = 1.3e-137 Identity = 239/245 (97.55%), Postives = 244/245 (99.59%), Query Frame = 0
BLAST of Tan0018660.1 vs. ExPASy TrEMBL
Match: A0A5D3CQV9 (Proteasome subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00450 PE=3 SV=1) HSP 1 Score: 496.9 bits (1278), Expect = 4.9e-137 Identity = 238/245 (97.14%), Postives = 243/245 (99.18%), Query Frame = 0
BLAST of Tan0018660.1 vs. ExPASy TrEMBL
Match: A0A6J1J6N8 (Proteasome subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111483953 PE=3 SV=1) HSP 1 Score: 496.9 bits (1278), Expect = 4.9e-137 Identity = 239/245 (97.55%), Postives = 243/245 (99.18%), Query Frame = 0
BLAST of Tan0018660.1 vs. ExPASy TrEMBL
Match: A0A1S3CLV2 (Proteasome subunit beta OS=Cucumis melo OX=3656 GN=LOC103501933 PE=3 SV=1) HSP 1 Score: 496.9 bits (1278), Expect = 4.9e-137 Identity = 238/245 (97.14%), Postives = 243/245 (99.18%), Query Frame = 0
BLAST of Tan0018660.1 vs. ExPASy TrEMBL
Match: A0A6J1L2I8 (Proteasome subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111499823 PE=3 SV=1) HSP 1 Score: 496.5 bits (1277), Expect = 6.3e-137 Identity = 238/245 (97.14%), Postives = 243/245 (99.18%), Query Frame = 0
BLAST of Tan0018660.1 vs. TAIR 10
Match: AT1G56450.1 (20S proteasome beta subunit G1 ) HSP 1 Score: 412.9 bits (1060), Expect = 1.8e-115 Identity = 192/243 (79.01%), Postives = 220/243 (90.53%), Query Frame = 0
BLAST of Tan0018660.1 vs. TAIR 10
Match: AT5G40580.1 (20S proteasome beta subunit PBB2 ) HSP 1 Score: 55.5 bits (132), Expect = 7.2e-08 Identity = 43/186 (23.12%), Postives = 88/186 (47.31%), Query Frame = 0
BLAST of Tan0018660.1 vs. TAIR 10
Match: AT5G40580.2 (20S proteasome beta subunit PBB2 ) HSP 1 Score: 55.5 bits (132), Expect = 7.2e-08 Identity = 43/186 (23.12%), Postives = 88/186 (47.31%), Query Frame = 0
BLAST of Tan0018660.1 vs. TAIR 10
Match: AT3G27430.1 (N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein ) HSP 1 Score: 54.3 bits (129), Expect = 1.6e-07 Identity = 44/186 (23.66%), Postives = 88/186 (47.31%), Query Frame = 0
BLAST of Tan0018660.1 vs. TAIR 10
Match: AT3G27430.2 (N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein ) HSP 1 Score: 54.3 bits (129), Expect = 1.6e-07 Identity = 44/186 (23.66%), Postives = 88/186 (47.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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