Tan0018309.2 (mRNA) Snake gourd v1

Overview


Name	Tan0018309.2
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein LOL2
Location	LG05: 84843929 .. 84847743 (-)
Sequence length	1056
RNA-Seq Expression	Tan0018309.2
Synteny	Tan0018309.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACAATGGAGAAGTCAGTGCGACAAGAGTTCTCCGTATCAGCGCGGGAGGTTTATAGTCCGCCGTAGAAAACATGGTCGATTCTCTGAGAACGACGAATCGAGAGAATGGAAGACCATGAAATCGAGAAAGACGAAGATGACGGACCTCCGCCTGGATGGGAACCTATCACTCCGCCGCTGCCGCCTCCACCACCGCCGCCACTTTCTTGTGAGTGCTTCCCAGTTTTATTTCAGTTATACTTCGTGTCCAATTCACGTCCGATATCCTTCTGATGCCTATTTGGTGATCGCCCGTCTTAGAATCATGTATTCACATACATGATAAATTGGATATCTGCTGCGGTACCGTGTTAATCTTGTCGCAGCTCTCTCGAATTACTAACTCCTAACTCAATTTTAGTTCTCTTTTCTGGTTTACAAAACTGTCTGTGTTCTGAGATTCGAAGCATCGATTTTTTTCCCAGCTTTAATTCATGTGGTCGAACTTCTGTTGATTGACTGCAAAAACATAAGTTGACATTTTGTTTAGTAATTTTTGCACATTATTTTCTTGTGTTCATGTTTGTGAGCGAATCGATTTGGTGGTTTCTTCCACTTACTTATGGAACCCAATTTATCAGCAAAAATCCTTTTGGAATTAGTTCAATTCAATTCTGTGCGCTATTAGTCCGCTTAAACAATTATAGTTCACACGTAGATTCAGTTCATGGAATTGATGTTAATTCGACAAAAGTGGATGGAATTTAGAACATTGGTATTAGCATGTTTTTCTGTAAGTCTCCAATATCGTCATTGGATGTGTTCAAAATCTTCTCACTGGAGACGTTTTGATCTGCAGCTGATATGGCACAAATGGTCTGTGGTTCCTGCCGTCGCCTACTTAAGTATTTAAAAGGAGCCAGATTTGTTCAGTGCTCTTGCTGTTTAACAGTCAACTATGTGTTAGAAGGTTCTGTCTCTTTTCCTTCTTTCTTTTAGTTTTTACTATTCTTTTCTTCCTTAAAAGTTGTCTTGCTCATATGCTGTTAGCTTTTAACTAATTTTTTAGAAGATTCTTATATCACCAATTAAGTTTATCCAAAAGCTTAAGCTGATAGGTTGGAATAAATTTAATTATATAAATACTAGTCTAACACCTCCCACTTGTGAGTTTGGAAATTTGAAGAAAAACCAAACAAGTGGAAATCAATATTAATTGGGAAGGAAACGATTTTACATGAGTTCGAACTCAGGACCTCCTGTTCTAATACCATATTAAATCACCAATTAACTCAACAACTTAAACTGATAGGTTGGAGTAAATTTAGTTATATCAATACTAGTCTAACAAAGATTCCACTTACATTGGTTTCAAAGTGCCATTAGCACTTCCCAAACTTTATGCTCTTCAAATCAGTTTTCTTCCTGCTGCGTCCTCTTTCATAGGAGGGTCAAGTGTTCGGCAGTAACTTTGAATATCTGTTTCTTGTGGTACTGCTTGGCTGGTGCCTGTATACCACTTTCTTTTGACCTATATGTAATAATTGAGGGAATTGGTTATAGTGGTAAATGATTTACATTATGTGATTGTGCCTCCAAACATCTATGTTCTACATAAAATCAAATATTGTAGGATCTGCGATATTTCTCAAATGGGTTATAGATGGATTTAGGTGGTTTTACAGACATTGAAATCTGAATCATTTTCTCCCATTCGAGCATTCAAGGTATCCACACCCTTATTGTCAGAGCCACCGAGTACATTTGTTGAGTTCCATCCTCTTAGCCTTGAGATGAGCGAATACTAGACAAGTTTATAAATTCGGTAATTGTATATAGCTTGATATTCAATTGATCATTACTTTTTTCTTTTCCTTTCTGTTGTCAATACATGCACGTAGTTGAAACTTGAAAGCAAATTTTTCCCTGCCAGAAGGGTCTCTACTATGTGTGTGCAATTGTCGAAGTATTCTCTGACCCTTGTATCCATCAATTAAATAGGTACTCCATCATGGATTGATTGAAATTTGACAAATTGAGTAGATGGGATTAGAATAGAGTCTGATTCTATATGTCAACTTTAATTTCCTGGAATTGGGATCAGGGGATGTAATTGATCATTTATGGAATCTATTGAAAAAAATGAAATTCATGTATAGAAGAAAAATACTTCAGCATGAATTTTCTTGGCAGTTCAATTCTATCTTGTTTTAAAAAGTTCGCGCCTGTCCGAAGCCCCAAACTTTGGAGGCAGTTCAAGTTTATCTATTTTGTCATTCTTTCATGATTCACTATTCAATATTAGCTTAATAGATTCAGTCTTTCTAACGACCTGCTGTCAAACTCTTATAATACAACTTTCCCTTTTCTTCTACTAACACCTCTGCATTCTCTTTCCAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTAGTGTGACAGAAATTGGGGTATGTATTGCCACTTTCTGACAAAGTTATTGCTTGGAATATGCTTAAATATGTACACAGTTTTATTCTTTCTGGTTGTCTCATTCATTCACTATGTCGAAACATGATTTGCTGTAAATTTAATCTTTCTTTGATCATTGGGTGGGAAATTTGTGCCCTTTCTAACGTAAACACAGATGCATAAAGCATGAATCTGGTGAAACTAATCCTCCCCATCACTCCATGTGTTGACCACAGTATAACTGCTGTAATGTCCACTGCCAAGGAGCATGGAGCCGCAGCCATTTCTACAGTCTTCTTGATGGATGAAATTATATTGTAACGTGCAATATGGATCGGAATAGTTGCTTAACAAATTCATGCCAATTAACAGCTTTAAAACTCTCTCTCTCTGAACAAATATATATATTATGTGGATCATTACGATGCTTTTGTCGCAAGTTCTTCATATTCTATGGAAATAAGGGTGTTGGTTAGAGTATTTTGCACTGTTACTTTGCTTTGATGCTTGATTGTTTTATTAATTGTATGACTGAGAAATCACGACTATAAATTTTAGCCTCTTGACTGCTTTAAGTGGCTGTGCAGGTGCATAATAGACGCCCACCGTGGTCTGTTCAGCAGGGGCAAGCAGCCCCTCCTACTAACGTCCAATAGAGTGCCTGCTCATCTATATGAAATACTTGTGCTTAGGAAAAGAACTGGCGTTTTTCTGAATTCTTCTTTTCCTTTGCAGCCTTAATCAGCAGAGAAGGAAAACAACATTATCATTATTGGCACCTTTTATTTCTCTATTATCTATTGAGTTTATGTAAAGAAACTGAATGGGCTAACTTCCCAACTTCTAACATGTTTTTATCTCATGTTTGACTTATCTAGGCCTTGTGACTTGACTTCCTACTTATATTCACTTATTAGGTGCTGGCAATCTCGGTGTTGTTCATTGTAAATGTGAATGCCACACTCATTCAAAGCAGCACAATGTACTCATTGAAGAGATTGATCAAATAGCTGTCTATGAACTAAATTTGGTCTCATTTCTAGCACTTATGGCCTTTTTTAGCCGCAGGATTTGGTGTAATCTGCTTGCTCAAGACTTTTCTTGTGAAGTGCAAATGGCCTTCTGCTATTTGTTTTCATGTACCTTATTGAATATTAGTTCTATGGGAATGGCTTTTTTCTTGTTGAAAAATTGGGTTGTGGCAATTTTAAATCATCTTAAATTTAGCGTTGGCGGAAGTTTAATGAGATGAGCGTATTACATTTGATCCTTCATATGTTTCCTTAGTTTTCAGATTTTTCGAGATCATGATTTTAAATTCTA

mRNA sequence

GAACAATGGAGAAGTCAGTGCGACAAGAGTTCTCCGTATCAGCGCGGGAGGTTTATAGTCCGCCGTAGAAAACATGGTCGATTCTCTGAGAACGACGAATCGAGAGAATGGAAGACCATGAAATCGAGAAAGACGAAGATGACGGACCTCCGCCTGGATGGGAACCTATCACTCCGCCGCTGCCGCCTCCACCACCGCCGCCACTTTCTTCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTAGTGTGACAGAAATTGGGGTGCATAATAGACGCCCACCGTGGTCTGTTCAGCAGGGGCAAGCAGCCCCTCCTACTAACGTCCAATAGAGTGCCTGCTCATCTATATGAAATACTTGTGCTTAGGAAAAGAACTGGCGTTTTTCTGAATTCTTCTTTTCCTTTGCAGCCTTAATCAGCAGAGAAGGAAAACAACATTATCATTATTGGCACCTTTTATTTCTCTATTATCTATTGAGTTTATGTAAAGAAACTGAATGGGCTAACTTCCCAACTTCTAACATGTTTTTATCTCATGTTTGACTTATCTAGGCCTTGTGACTTGACTTCCTACTTATATTCACTTATTAGGTGCTGGCAATCTCGGTGTTGTTCATTGTAAATGTGAATGCCACACTCATTCAAAGCAGCACAATGTACTCATTGAAGAGATTGATCAAATAGCTGTCTATGAACTAAATTTGGTCTCATTTCTAGCACTTATGGCCTTTTTTAGCCGCAGGATTTGGTGTAATCTGCTTGCTCAAGACTTTTCTTGTGAAGTGCAAATGGCCTTCTGCTATTTGTTTTCATGTACCTTATTGAATATTAGTTCTATGGGAATGGCTTTTTTCTTGTTGAAAAATTGGGTTGTGGCAATTTTAAATCATCTTAAATTTAGCGTTGGCGGAAGTTTAATGAGATGAGCGTATTACATTTGATCCTTCATATGTTTCCTTAGTTTTCAGATTTTTCGAGATCATGATTTTAAATTCTA

Coding sequence (CDS)

ATGGAAGACCATGAAATCGAGAAAGACGAAGATGACGGACCTCCGCCTGGATGGGAACCTATCACTCCGCCGCTGCCGCCTCCACCACCGCCGCCACTTTCTTCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTAGTGTGACAGAAATTGGGGTGCATAATAGACGCCCACCGTGGTCTGTTCAGCAGGGGCAAGCAGCCCCTCCTACTAACGTCCAATAG

Protein sequence

MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNVQ

Homology

[Close]

BLAST of Tan0018309.2 vs. ExPASy Swiss-Prot
Match: O65426 (Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-14
Identity = 50/128 (39.06%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 5   EIEKDEDDGPPPGWEPITPPLPPP---------PPPP----------------------- 64
           E E++E++GPPPGWE  +  LPPP         P P                        
Sbjct: 17  EEEEEEEEGPPPGWE--SAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLR 76

Query: 65  ----------------LSSHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRR 85
                           L +++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N+R
Sbjct: 77  GSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKR 136

[Close]

BLAST of Tan0018309.2 vs. ExPASy Swiss-Prot
Match: Q704V3 (Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 33  LSSHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 84
           L +HEVG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R   S++Q
Sbjct: 101 LEAHEVGKVHCGHCATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSIEQ 151

[Close]

BLAST of Tan0018309.2 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-08
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 35  SHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAPPT 91
           S +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 92  SSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

[Close]

BLAST of Tan0018309.2 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.5e-06
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 33  LSSHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG 72
           L +++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Sbjct: 104 LEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of Tan0018309.2 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.5e-06
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 33  LSSHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG 72
           + +++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Sbjct: 135 MEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVG 173

[Close]

BLAST of Tan0018309.2 vs. NCBI nr
Match: XP_022927005.1 (protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo subsp. pepo] >KAG6583998.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019620.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.5 bits (410), Expect = 1.7e-36
Identity = 87/128 (67.97%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS------------------------- 60
           ME HEIEKDEDDGPPPGWEPITPPLP PPP PLSS                         
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  ------------HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 92
                       HEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

[Close]

BLAST of Tan0018309.2 vs. NCBI nr
Match: XP_023001758.1 (protein LOL2 [Cucurbita maxima])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 86/128 (67.19%), Postives = 86/128 (67.19%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS------------------------- 60
           ME HEIEKDEDDGPPPGWEPITPPLP  PP PLSS                         
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  ------------HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 92
                       HEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

[Close]

BLAST of Tan0018309.2 vs. NCBI nr
Match: XP_004146601.1 (protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_013266 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 5.5e-35
Identity = 85/128 (66.41%), Postives = 86/128 (67.19%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS------------------------- 60
           M+ HEIEKDEDDGPPPGWEPITP LP PPPP LSS                         
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  ------------HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 92
                       HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

[Close]

BLAST of Tan0018309.2 vs. NCBI nr
Match: XP_011653178.1 (protein LOL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 7.1e-35
Identity = 85/129 (65.89%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS------------------------- 60
           M+ HEIEKDEDDGPPPGWEPITP LP PPPP LSS                         
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  -------------HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 92
                        HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 
Sbjct: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH 120

[Close]

BLAST of Tan0018309.2 vs. NCBI nr
Match: XP_022140183.1 (protein LOL2 [Momordica charantia])

HSP 1 Score: 156.8 bits (395), Expect = 9.3e-35
Identity = 83/129 (64.34%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS------------------------- 60
           ME  EI+ DEDDGPPPGWEPITPP PPPPPPPLSS                         
Sbjct: 1   MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRC 60

Query: 61  ------------HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 93
                        EVGQVKCGSCA+LLMYPYGASSVRCSSCT+VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWSVQQ 120

[Close]

BLAST of Tan0018309.2 vs. ExPASy TrEMBL
Match: A0A6J1EMN3 (protein LOL2 OS=Cucurbita moschata OX=3662 GN=LOC111433966 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.2e-37
Identity = 87/128 (67.97%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS------------------------- 60
           ME HEIEKDEDDGPPPGWEPITPPLP PPP PLSS                         
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  ------------HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 92
                       HEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

[Close]

BLAST of Tan0018309.2 vs. ExPASy TrEMBL
Match: A0A6J1KRG9 (protein LOL2 OS=Cucurbita maxima OX=3661 GN=LOC111495801 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.0e-36
Identity = 86/128 (67.19%), Postives = 86/128 (67.19%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS------------------------- 60
           ME HEIEKDEDDGPPPGWEPITPPLP  PP PLSS                         
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  ------------HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 92
                       HEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

[Close]

BLAST of Tan0018309.2 vs. ExPASy TrEMBL
Match: A0A0A0LXE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.6e-35
Identity = 85/128 (66.41%), Postives = 86/128 (67.19%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS------------------------- 60
           M+ HEIEKDEDDGPPPGWEPITP LP PPPP LSS                         
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  ------------HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 92
                       HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

[Close]

BLAST of Tan0018309.2 vs. ExPASy TrEMBL
Match: A0A6J1CHF4 (protein LOL2 OS=Momordica charantia OX=3673 GN=LOC111010913 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.5e-35
Identity = 83/129 (64.34%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS------------------------- 60
           ME  EI+ DEDDGPPPGWEPITPP PPPPPPPLSS                         
Sbjct: 1   MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRC 60

Query: 61  ------------HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 93
                        EVGQVKCGSCA+LLMYPYGASSVRCSSCT+VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWSVQQ 120

[Close]

BLAST of Tan0018309.2 vs. ExPASy TrEMBL
Match: A0A5A7UQS3 (Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001680 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 84/128 (65.62%), Postives = 86/128 (67.19%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLS-------------------------- 60
           M+ HEIEKDEDDGPPPGWEPITP LP PP P LS                          
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  -----------SHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 92
                      +HEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120

[Close]

BLAST of Tan0018309.2 vs. TAIR 10
Match: AT4G21610.1 (lsd one like 2 )

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-15
Identity = 50/128 (39.06%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 5   EIEKDEDDGPPPGWEPITPPLPPP---------PPPP----------------------- 64
           E E++E++GPPPGWE  +  LPPP         P P                        
Sbjct: 17  EEEEEEEEGPPPGWE--SAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLR 76

Query: 65  ----------------LSSHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRR 85
                           L +++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N+R
Sbjct: 77  GSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKR 136

[Close]

BLAST of Tan0018309.2 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 35  SHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAPPT 91
           S +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 92  SSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

[Close]

BLAST of Tan0018309.2 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 35  SHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAPPT 91
           S +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 87  SSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 144

[Close]

BLAST of Tan0018309.2 vs. TAIR 10
Match: AT4G20380.3 (LSD1 zinc finger family protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 35  SHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAPPT 91
           S +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 87  SSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 144

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BLAST of Tan0018309.2 vs. TAIR 10
Match: AT4G20380.4 (LSD1 zinc finger family protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 35  SHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAPPT 91
           S +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 87  SSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 144

The following BLAST results are available for this feature:

BLAST of Tan0018309.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65426	4.2e-14	39.06	Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1	[more]
Q704V3	1.3e-10	58.82	Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1	[more]
P94077	3.5e-08	46.55	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]
Q93ZB1	5.5e-06	51.28	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	9.5e-06	48.72	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]

BLAST of Tan0018309.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927005.1	1.7e-36	67.97	protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo s...	[more]
XP_023001758.1	1.4e-35	67.19	protein LOL2 [Cucurbita maxima]	[more]
XP_004146601.1	5.5e-35	66.41	protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_0...	[more]
XP_011653178.1	7.1e-35	65.89	protein LOL2 isoform X1 [Cucumis sativus]	[more]
XP_022140183.1	9.3e-35	64.34	protein LOL2 [Momordica charantia]	[more]

BLAST of Tan0018309.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMN3	8.2e-37	67.97	protein LOL2 OS=Cucurbita moschata OX=3662 GN=LOC111433966 PE=4 SV=1	[more]
A0A6J1KRG9	7.0e-36	67.19	protein LOL2 OS=Cucurbita maxima OX=3661 GN=LOC111495801 PE=4 SV=1	[more]
A0A0A0LXE3	2.6e-35	66.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1	[more]
A0A6J1CHF4	4.5e-35	64.34	protein LOL2 OS=Momordica charantia OX=3673 GN=LOC111010913 PE=4 SV=1	[more]
A0A5A7UQS3	1.3e-34	65.63	Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Tan0018309.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21610.1	3.0e-15	39.06	lsd one like 2	[more]
AT4G20380.2	2.5e-09	46.55	LSD1 zinc finger family protein	[more]
AT4G20380.1	2.5e-09	46.55	LSD1 zinc finger family protein	[more]
AT4G20380.3	2.5e-09	46.55	LSD1 zinc finger family protein	[more]
AT4G20380.4	2.5e-09	46.55	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 43..67 e-value: 2.3E-11 score: 43.3
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 40..69 e-value: 1.7E-12 score: 44.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35
None	No IPR available	PANTHER	PTHR31747:SF17	PROTEIN LOL2	coord: 33..90
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 33..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0018309	Tan0018309	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018309.2-exon	Tan0018309.2-exon-LG05:84843929..84844664	exon
Tan0018309.2-exon	Tan0018309.2-exon-LG05:84845253..84845362	exon
Tan0018309.2-exon	Tan0018309.2-exon-LG05:84847534..84847743	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018309.2-three_prime_utr	Tan0018309.2-three_prime_utr-LG05:84843929..84844595	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018309.2-cds	Tan0018309.2-cds-LG05:84844596..84844664	CDS
Tan0018309.2-cds	Tan0018309.2-cds-LG05:84845253..84845362	CDS
Tan0018309.2-cds	Tan0018309.2-cds-LG05:84847534..84847636	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018309.2-five_prime_utr	Tan0018309.2-five_prime_utr-LG05:84847637..84847743	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0018309.2	Tan0018309.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005634	nucleus