Tan0018309 (gene) Snake gourd v1

Overview


Name	Tan0018309
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein LOL2
Location	LG05: 84843929 .. 84847743 (-)
RNA-Seq Expression	Tan0018309
Synteny	Tan0018309

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACAATGGAGAAGTCAGTGCGACAAGAGTTCTCCGTATCAGCGCGGGAGGTTTATAGTCCGCCGTAGAAAACATGGTCGATTCTCTGAGAACGACGAATCGAGAGAATGGAAGACCATGAAATCGAGAAAGACGAAGATGACGGACCTCCGCCTGGATGGGAACCTATCACTCCGCCGCTGCCGCCTCCACCACCGCCGCCACTTTCTTGTGAGTGCTTCCCAGTTTTATTTCAGTTATACTTCGTGTCCAATTCACGTCCGATATCCTTCTGATGCCTATTTGGTGATCGCCCGTCTTAGAATCATGTATTCACATACATGATAAATTGGATATCTGCTGCGGTACCGTGTTAATCTTGTCGCAGCTCTCTCGAATTACTAACTCCTAACTCAATTTTAGTTCTCTTTTCTGGTTTACAAAACTGTCTGTGTTCTGAGATTCGAAGCATCGATTTTTTTCCCAGCTTTAATTCATGTGGTCGAACTTCTGTTGATTGACTGCAAAAACATAAGTTGACATTTTGTTTAGTAATTTTTGCACATTATTTTCTTGTGTTCATGTTTGTGAGCGAATCGATTTGGTGGTTTCTTCCACTTACTTATGGAACCCAATTTATCAGCAAAAATCCTTTTGGAATTAGTTCAATTCAATTCTGTGCGCTATTAGTCCGCTTAAACAATTATAGTTCACACGTAGATTCAGTTCATGGAATTGATGTTAATTCGACAAAAGTGGATGGAATTTAGAACATTGGTATTAGCATGTTTTTCTGTAAGTCTCCAATATCGTCATTGGATGTGTTCAAAATCTTCTCACTGGAGACGTTTTGATCTGCAGCTGATATGGCACAAATGGTCTGTGGTTCCTGCCGTCGCCTACTTAAGTATTTAAAAGGAGCCAGATTTGTTCAGTGCTCTTGCTGTTTAACAGTCAACTATGTGTTAGAAGGTTCTGTCTCTTTTCCTTCTTTCTTTTAGTTTTTACTATTCTTTTCTTCCTTAAAAGTTGTCTTGCTCATATGCTGTTAGCTTTTAACTAATTTTTTAGAAGATTCTTATATCACCAATTAAGTTTATCCAAAAGCTTAAGCTGATAGGTTGGAATAAATTTAATTATATAAATACTAGTCTAACACCTCCCACTTGTGAGTTTGGAAATTTGAAGAAAAACCAAACAAGTGGAAATCAATATTAATTGGGAAGGAAACGATTTTACATGAGTTCGAACTCAGGACCTCCTGTTCTAATACCATATTAAATCACCAATTAACTCAACAACTTAAACTGATAGGTTGGAGTAAATTTAGTTATATCAATACTAGTCTAACAAAGATTCCACTTACATTGGTTTCAAAGTGCCATTAGCACTTCCCAAACTTTATGCTCTTCAAATCAGTTTTCTTCCTGCTGCGTCCTCTTTCATAGGAGGGTCAAGTGTTCGGCAGTAACTTTGAATATCTGTTTCTTGTGGTACTGCTTGGCTGGTGCCTGTATACCACTTTCTTTTGACCTATATGTAATAATTGAGGGAATTGGTTATAGTGGTAAATGATTTACATTATGTGATTGTGCCTCCAAACATCTATGTTCTACATAAAATCAAATATTGTAGGATCTGCGATATTTCTCAAATGGGTTATAGATGGATTTAGGTGGTTTTACAGACATTGAAATCTGAATCATTTTCTCCCATTCGAGCATTCAAGGTATCCACACCCTTATTGTCAGAGCCACCGAGTACATTTGTTGAGTTCCATCCTCTTAGCCTTGAGATGAGCGAATACTAGACAAGTTTATAAATTCGGTAATTGTATATAGCTTGATATTCAATTGATCATTACTTTTTTCTTTTCCTTTCTGTTGTCAATACATGCACGTAGTTGAAACTTGAAAGCAAATTTTTCCCTGCCAGAAGGGTCTCTACTATGTGTGTGCAATTGTCGAAGTATTCTCTGACCCTTGTATCCATCAATTAAATAGGTACTCCATCATGGATTGATTGAAATTTGACAAATTGAGTAGATGGGATTAGAATAGAGTCTGATTCTATATGTCAACTTTAATTTCCTGGAATTGGGATCAGGGGATGTAATTGATCATTTATGGAATCTATTGAAAAAAATGAAATTCATGTATAGAAGAAAAATACTTCAGCATGAATTTTCTTGGCAGTTCAATTCTATCTTGTTTTAAAAAGTTCGCGCCTGTCCGAAGCCCCAAACTTTGGAGGCAGTTCAAGTTTATCTATTTTGTCATTCTTTCATGATTCACTATTCAATATTAGCTTAATAGATTCAGTCTTTCTAACGACCTGCTGTCAAACTCTTATAATACAACTTTCCCTTTTCTTCTACTAACACCTCTGCATTCTCTTTCCAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTAGTGTGACAGAAATTGGGGTATGTATTGCCACTTTCTGACAAAGTTATTGCTTGGAATATGCTTAAATATGTACACAGTTTTATTCTTTCTGGTTGTCTCATTCATTCACTATGTCGAAACATGATTTGCTGTAAATTTAATCTTTCTTTGATCATTGGGTGGGAAATTTGTGCCCTTTCTAACGTAAACACAGATGCATAAAGCATGAATCTGGTGAAACTAATCCTCCCCATCACTCCATGTGTTGACCACAGTATAACTGCTGTAATGTCCACTGCCAAGGAGCATGGAGCCGCAGCCATTTCTACAGTCTTCTTGATGGATGAAATTATATTGTAACGTGCAATATGGATCGGAATAGTTGCTTAACAAATTCATGCCAATTAACAGCTTTAAAACTCTCTCTCTCTGAACAAATATATATATTATGTGGATCATTACGATGCTTTTGTCGCAAGTTCTTCATATTCTATGGAAATAAGGGTGTTGGTTAGAGTATTTTGCACTGTTACTTTGCTTTGATGCTTGATTGTTTTATTAATTGTATGACTGAGAAATCACGACTATAAATTTTAGCCTCTTGACTGCTTTAAGTGGCTGTGCAGGTGCATAATAGACGCCCACCGTGGTCTGTTCAGCAGGGGCAAGCAGCCCCTCCTACTAACGTCCAATAGAGTGCCTGCTCATCTATATGAAATACTTGTGCTTAGGAAAAGAACTGGCGTTTTTCTGAATTCTTCTTTTCCTTTGCAGCCTTAATCAGCAGAGAAGGAAAACAACATTATCATTATTGGCACCTTTTATTTCTCTATTATCTATTGAGTTTATGTAAAGAAACTGAATGGGCTAACTTCCCAACTTCTAACATGTTTTTATCTCATGTTTGACTTATCTAGGCCTTGTGACTTGACTTCCTACTTATATTCACTTATTAGGTGCTGGCAATCTCGGTGTTGTTCATTGTAAATGTGAATGCCACACTCATTCAAAGCAGCACAATGTACTCATTGAAGAGATTGATCAAATAGCTGTCTATGAACTAAATTTGGTCTCATTTCTAGCACTTATGGCCTTTTTTAGCCGCAGGATTTGGTGTAATCTGCTTGCTCAAGACTTTTCTTGTGAAGTGCAAATGGCCTTCTGCTATTTGTTTTCATGTACCTTATTGAATATTAGTTCTATGGGAATGGCTTTTTTCTTGTTGAAAAATTGGGTTGTGGCAATTTTAAATCATCTTAAATTTAGCGTTGGCGGAAGTTTAATGAGATGAGCGTATTACATTTGATCCTTCATATGTTTCCTTAGTTTTCAGATTTTTCGAGATCATGATTTTAAATTCTA

mRNA sequence

GAACAATGGAGAAGTCAGTGCGACAAGAGTTCTCCGTATCAGCGCGGGAGGTTTATAGTCCGCCGTAGAAAACATGGTCGATTCTCTGAGAACGACGAATCGAGAGAATGGAAGACCATGAAATCGAGAAAGACGAAGATGACGGACCTCCGCCTGGATGGGAACCTATCACTCCGCCGCTGCCGCCTCCACCACCGCCGCCACTTTCTTCTGATATGGCACAAATGGTCTGTGGTTCCTGCCGTCGCCTACTTAAGTATTTAAAAGGAGCCAGATTTGTTCAGTGCTCTTGCTGTTTAACAGTCAACTATGTGTTAGAAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTAGTGTGACAGAAATTGGGGTGCATAATAGACGCCCACCGTGGTCTGTTCAGCAGGGGCAAGCAGCCCCTCCTACTAACGTCCAATAGAGTGCCTGCTCATCTATATGAAATACTTGTGCTTAGGAAAAGAACTGGCGTTTTTCTGAATTCTTCTTTTCCTTTGCAGCCTTAATCAGCAGAGAAGGAAAACAACATTATCATTATTGGCACCTTTTATTTCTCTATTATCTATTGAGTTTATGTAAAGAAACTGAATGGGCTAACTTCCCAACTTCTAACATGTTTTTATCTCATGTTTGACTTATCTAGGCCTTGTGACTTGACTTCCTACTTATATTCACTTATTAGGTGCTGGCAATCTCGGTGTTGTTCATTGTAAATGTGAATGCCACACTCATTCAAAGCAGCACAATGTACTCATTGAAGAGATTGATCAAATAGCTGTCTATGAACTAAATTTGGTCTCATTTCTAGCACTTATGGCCTTTTTTAGCCGCAGGATTTGGTGTAATCTGCTTGCTCAAGACTTTTCTTGTGAAGTGCAAATGGCCTTCTGCTATTTGTTTTCATGTACCTTATTGAATATTAGTTCTATGGGAATGGCTTTTTTCTTGTTGAAAAATTGGGTTGTGGCAATTTTAAATCATCTTAAATTTAGCGTTGGCGGAAGTTTAATGAGATGAGCGTATTACATTTGATCCTTCATATGTTTCCTTAGTTTTCAGATTTTTCGAGATCATGATTTTAAATTCTA

Coding sequence (CDS)

ATGGAAGACCATGAAATCGAGAAAGACGAAGATGACGGACCTCCGCCTGGATGGGAACCTATCACTCCGCCGCTGCCGCCTCCACCACCGCCGCCACTTTCTTCTGATATGGCACAAATGGTCTGTGGTTCCTGCCGTCGCCTACTTAAGTATTTAAAAGGAGCCAGATTTGTTCAGTGCTCTTGCTGTTTAACAGTCAACTATGTGTTAGAAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTAGTGTGACAGAAATTGGGGTGCATAATAGACGCCCACCGTGGTCTGTTCAGCAGGGGCAAGCAGCCCCTCCTACTAACGTCCAATAG

Protein sequence

MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNVQ

Homology

[Close]

BLAST of Tan0018309 vs. ExPASy Swiss-Prot
Match: O65426 (Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.6e-33
Identity = 73/126 (57.94%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 5   EIEKDEDDGPPPGWEPITPPLP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGA 64
           E E++E++GPPPGWE    P P         P P      + AQMVCGSCRRLL YL+G+
Sbjct: 17  EEEEEEEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGS 76

Query: 65  RFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP 122
           + V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N+RPP
Sbjct: 77  KHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of Tan0018309 vs. ExPASy Swiss-Prot
Match: Q704V3 (Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.2e-28
Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 16  PGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEV 75
           P  +   P +PPPP P L+ ++ QMVCGSCR LL Y +GA +V C+CC T+NYVLEAHEV
Sbjct: 47  PCLQDSVPLVPPPPSPYLNKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEV 106

Query: 76  GQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 121
           G+V CG CA LLMYP+GA +V+CS C  VTEIG  N R   S++Q
Sbjct: 107 GKVHCGHCATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSIEQ 151

[Close]

BLAST of Tan0018309 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-21
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 31  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYP 90
           PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY 
Sbjct: 65  PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQ 124

Query: 91  YGASSVRCSSCTSVTEIG 109
           YGA SV+C+ C  VT +G
Sbjct: 125 YGARSVKCAVCNFVTSVG 142

[Close]

BLAST of Tan0018309 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-20
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 31  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYP 90
           P   ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY 
Sbjct: 96  PAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQ 155

Query: 91  YGASSVRCSSCTSVTEIG 109
           YGA SV+C+ C  VT +G
Sbjct: 156 YGARSVKCAVCNFVTSVG 173

[Close]

BLAST of Tan0018309 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.2e-20
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 27  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYV---------LEAHEVGQ 86
           PPPPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q
Sbjct: 40  PPPPPP--HDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQ 99

Query: 87  VKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAPPT 128
           + CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 100 INCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

[Close]

BLAST of Tan0018309 vs. NCBI nr
Match: XP_022927005.1 (protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo subsp. pepo] >KAG6583998.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019620.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.9 bits (642), Expect = 3.0e-63
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQC 60
           ME HEIEKDEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCG+CRRLLKYLKGAR+VQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           SCC TVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTN 129
           GQAAPPTN
Sbjct: 121 GQAAPPTN 128

[Close]

BLAST of Tan0018309 vs. NCBI nr
Match: XP_023001758.1 (protein LOL2 [Cucurbita maxima])

HSP 1 Score: 248.8 bits (634), Expect = 2.5e-62
Identity = 120/128 (93.75%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQC 60
           ME HEIEKDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCG+CRRLLKYLKGAR+VQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           SCC TVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTN 129
           GQAAPPTN
Sbjct: 121 GQAAPPTN 128

[Close]

BLAST of Tan0018309 vs. NCBI nr
Match: XP_022140183.1 (protein LOL2 [Momordica charantia])

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61
Identity = 117/129 (90.70%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQC 60
           ME  EI+ DEDDGPPPGWEPITPP PPPPPPPLSSDMAQMVCGSCRRLLKYLKGAR+V+C
Sbjct: 1   MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRC 60

Query: 61  SCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           SCC TVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSSCT+VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNV 130
           GQA PPTNV
Sbjct: 121 GQATPPTNV 129

[Close]

BLAST of Tan0018309 vs. NCBI nr
Match: XP_004146601.1 (protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_013266 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 2.8e-61
Identity = 118/128 (92.19%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQC 60
           M+ HEIEKDEDDGPPPGWEPITP LP PPPP LSSDMAQMVCG+CRRLLKYLKGAR+VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           SCC TVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

Query: 121 GQAAPPTN 129
           GQAAPPTN
Sbjct: 121 GQAAPPTN 128

[Close]

BLAST of Tan0018309 vs. NCBI nr
Match: XP_011653178.1 (protein LOL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 6.9e-60
Identity = 118/129 (91.47%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSS-DMAQMVCGSCRRLLKYLKGARFVQ 60
           M+ HEIEKDEDDGPPPGWEPITP LP PPPP LSS DMAQMVCG+CRRLLKYLKGAR+VQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CSCC TVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 
Sbjct: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH 120

Query: 121 QGQAAPPTN 129
           QGQAAPPTN
Sbjct: 121 QGQAAPPTN 129

[Close]

BLAST of Tan0018309 vs. ExPASy TrEMBL
Match: A0A6J1EMN3 (protein LOL2 OS=Cucurbita moschata OX=3662 GN=LOC111433966 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQC 60
           ME HEIEKDEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCG+CRRLLKYLKGAR+VQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           SCC TVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTN 129
           GQAAPPTN
Sbjct: 121 GQAAPPTN 128

[Close]

BLAST of Tan0018309 vs. ExPASy TrEMBL
Match: A0A6J1KRG9 (protein LOL2 OS=Cucurbita maxima OX=3661 GN=LOC111495801 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 120/128 (93.75%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQC 60
           ME HEIEKDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCG+CRRLLKYLKGAR+VQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           SCC TVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTN 129
           GQAAPPTN
Sbjct: 121 GQAAPPTN 128

[Close]

BLAST of Tan0018309 vs. ExPASy TrEMBL
Match: A0A6J1CHF4 (protein LOL2 OS=Momordica charantia OX=3673 GN=LOC111010913 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.0e-61
Identity = 117/129 (90.70%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQC 60
           ME  EI+ DEDDGPPPGWEPITPP PPPPPPPLSSDMAQMVCGSCRRLLKYLKGAR+V+C
Sbjct: 1   MEFQEIDNDEDDGPPPGWEPITPPPPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRC 60

Query: 61  SCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           SCC TVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSSCT+VTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNV 130
           GQA PPTNV
Sbjct: 121 GQATPPTNV 129

[Close]

BLAST of Tan0018309 vs. ExPASy TrEMBL
Match: A0A0A0LXE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 118/128 (92.19%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQC 60
           M+ HEIEKDEDDGPPPGWEPITP LP PPPP LSSDMAQMVCG+CRRLLKYLKGAR+VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           SCC TVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

Query: 121 GQAAPPTN 129
           GQAAPPTN
Sbjct: 121 GQAAPPTN 128

[Close]

BLAST of Tan0018309 vs. ExPASy TrEMBL
Match: A0A5A7UQS3 (Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001680 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.2e-59
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MEDHEIEKDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQC 60
           M+ HEIEKDEDDGPPPGWEPITP LP PP P LS DMAQMVCG+CRRLLKYLKGAR+VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           S C TVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTN 129
           GQAAPPTN
Sbjct: 121 GQAAPPTN 128

[Close]

BLAST of Tan0018309 vs. TAIR 10
Match: AT4G21610.1 (lsd one like 2 )

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-34
Identity = 73/126 (57.94%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 5   EIEKDEDDGPPPGWEPITPPLP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGA 64
           E E++E++GPPPGWE    P P         P P      + AQMVCGSCRRLL YL+G+
Sbjct: 17  EEEEEEEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGS 76

Query: 65  RFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP 122
           + V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N+RPP
Sbjct: 77  KHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of Tan0018309 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-22
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 31  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYP 90
           PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY 
Sbjct: 65  PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQ 124

Query: 91  YGASSVRCSSCTSVTEIG 109
           YGA SV+C+ C  VT +G
Sbjct: 125 YGARSVKCAVCNFVTSVG 142

[Close]

BLAST of Tan0018309 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-22
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 31  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYP 90
           PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY 
Sbjct: 98  PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQ 157

Query: 91  YGASSVRCSSCTSVTEIG 109
           YGA SV+C+ C  VT +G
Sbjct: 158 YGARSVKCAVCNFVTSVG 175

[Close]

BLAST of Tan0018309 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-22
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 31  PPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYVLEAHEVGQVKCGSCAVLLMYP 90
           PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY 
Sbjct: 65  PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQ 124

Query: 91  YGASSVRCSSCTSVTEIG 109
           YGA SV+C+ C  VT +G
Sbjct: 125 YGARSVKCAVCNFVTSVG 142

[Close]

BLAST of Tan0018309 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 98.2 bits (243), Expect = 5.1e-21
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 27  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARFVQCSCCLTVNYV---------LEAHEVGQ 86
           PPPPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q
Sbjct: 40  PPPPPP--HDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQ 99

Query: 87  VKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAPPT 128
           + CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 100 INCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

The following BLAST results are available for this feature:

BLAST of Tan0018309 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65426	2.6e-33	57.94	Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1	[more]
Q704V3	4.2e-28	58.10	Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1	[more]
Q93ZB1	2.2e-21	57.69	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	3.2e-20	55.13	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
P94077	7.2e-20	45.54	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of Tan0018309 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927005.1	3.0e-63	94.53	protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo s...	[more]
XP_023001758.1	2.5e-62	93.75	protein LOL2 [Cucurbita maxima]	[more]
XP_022140183.1	2.1e-61	90.70	protein LOL2 [Momordica charantia]	[more]
XP_004146601.1	2.8e-61	92.19	protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_0...	[more]
XP_011653178.1	6.9e-60	91.47	protein LOL2 isoform X1 [Cucumis sativus]	[more]

BLAST of Tan0018309 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMN3	1.4e-63	94.53	protein LOL2 OS=Cucurbita moschata OX=3662 GN=LOC111433966 PE=4 SV=1	[more]
A0A6J1KRG9	1.2e-62	93.75	protein LOL2 OS=Cucurbita maxima OX=3661 GN=LOC111495801 PE=4 SV=1	[more]
A0A6J1CHF4	1.0e-61	90.70	protein LOL2 OS=Momordica charantia OX=3673 GN=LOC111010913 PE=4 SV=1	[more]
A0A0A0LXE3	1.4e-61	92.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1	[more]
A0A5A7UQS3	2.2e-59	90.63	Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Tan0018309 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21610.1	1.8e-34	57.94	lsd one like 2	[more]
AT1G32540.2	1.6e-22	57.69	lsd one like 1	[more]
AT1G32540.1	1.6e-22	57.69	lsd one like 1	[more]
AT1G32540.3	1.6e-22	57.69	lsd one like 1	[more]
AT4G20380.2	5.1e-21	45.54	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 43..67 e-value: 2.3E-11 score: 43.3
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 40..69 e-value: 1.7E-12 score: 44.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35
None	No IPR available	PANTHER	PTHR31747:SF17	PROTEIN LOL2	coord: 33..90
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 33..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018309.1	Tan0018309.1	mRNA
Tan0018309.2	Tan0018309.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005634	nucleus