Tan0018133.1 (mRNA) Snake gourd v1

Overview
NameTan0018133.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG04: 81415844 .. 81416236 (+)
Sequence length321
RNA-Seq ExpressionTan0018133.1
SyntenyTan0018133.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTGGAACTCCGGATGGTTCCAGTTATTCTGCTGGTGCTGGTACGGCTGCTGGTGCTGCTGCGATGGCGGGGGCGGGGGCTGGTGCTGGTGCTGGAACGGCGGCTGGTGCTGGGGTGGCGGCGGAGGAGGCGGTGGTGCGGGATGGTGCGGGTACTGTGGGGGATAATTGGGCTGGCCAAAAGGGGGGCCGGAATGGTGATTGGGGTATTGAACATAGGGATCAAACTGATGGTTGAAATTGGGGCGGTGGTCGTCGGAGGGCCACGGCGGCGCCGAGGAAGAATGGCGGTGCCTCTCCAGTTTCGAATAATTGGAATCGAACAACGGAAAATTACTCGAGGCCTGAGGACGAACTGGCGAATCGAAGACAAAGACGAAGCTAGATGA

mRNA sequence

ATGATTGTGGAACTCCGGATGGTTCCAGTTATTCTGCTGGTGCTGGTACGGCTGCTGGTGCTGCGGTGGTGCGGGATGGTGCGGGTACTGTGGGGGATAATTGGGCTGGCCAAAAGGGGGGCCGGAATGGTGATTGGGGTATTGAACATAGGGATCAAACTGATGGTTGAAATTGGGGCGGTGGTCGTCGGAGGGCCACGGCGGCGCCGAGGAAGAATGGCGGTGCCTCTCCAGTTTCGAATAATTGGAATCGAACAACGGAAAATTACTCGAGGCCTGAGGACGAACTGGCGAATCGAAGACAAAGACGAAGCTAGATGA

Coding sequence (CDS)

ATGATTGTGGAACTCCGGATGGTTCCAGTTATTCTGCTGGTGCTGGTACGGCTGCTGGTGCTGCGGTGGTGCGGGATGGTGCGGGTACTGTGGGGGATAATTGGGCTGGCCAAAAGGGGGGCCGGAATGGTGATTGGGGTATTGAACATAGGGATCAAACTGATGGTTGAAATTGGGGCGGTGGTCGTCGGAGGGCCACGGCGGCGCCGAGGAAGAATGGCGGTGCCTCTCCAGTTTCGAATAATTGGAATCGAACAACGGAAAATTACTCGAGGCCTGAGGACGAACTGGCGAATCGAAGACAAAGACGAAGCTAGATGA

Protein sequence

MIVELRMVPVILLVLVRLLVLRWCGMVRVLWGIIGLAKRGAGMVIGVLNIGIKLMVEIGAVVVGGPRRRRGRMAVPLQFRIIGIEQRKITRGLRTNWRIEDKDEAR
Homology
[Close]
BLAST of Tan0018133.1 vs. NCBI nr
Match: KAE8650755.1 (hypothetical protein Csa_023869, partial [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 0 

Query: 31  WGIIGLAKRGAGMVIGVLNIGIKLMVEIGAVVVGGPRRRRGRMAVPLQFRIIGIEQRKIT 90
           WG     ++GAGMVIGVLNIGIKL++EIG+ VVG PRR  GR  VPLQF   G+EQ +  
Sbjct: 31  WG----GQKGAGMVIGVLNIGIKLVIEIGSSVVGRPRRCGGRRVVPLQFCRKGMEQEEEE 90

Query: 91  RG----LRTNWRIEDKDE 105
           +G    +    R+E+++E
Sbjct: 91  KGGGLRMIRRLRMEEEEE 104

[Close]
BLAST of Tan0018133.1 vs. ExPASy TrEMBL
Match: A0A0A0LDH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G535640 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.5e-14
Identity = 62/108 (57.41%), Postives = 78/108 (72.22%), Query Frame = 0 

Query: 1   MIVELRMVPVILLVLVRLLVLRWCGMVRVLWGIIGLAKRGAGMVIGVLNIGIKLMVEIGA 60
           MIVELRMVPVI+LVL+ +LV     +V VL GIIG+ KRG GMVIGVLNIGIKL++EIG+
Sbjct: 1   MIVELRMVPVIVLVLMLMLV---GVLVSVLRGIIGVDKRGPGMVIGVLNIGIKLVIEIGS 60

Query: 61  VVVGGPRRRRGRMAVPLQFRIIGIEQRKITRG----LRTNWRIEDKDE 105
            VVG PRR  GR  VPLQF   G+EQ +  +G    +    R+E+++E
Sbjct: 61  SVVGRPRRCGGRRVVPLQFCRKGMEQEEEEKGGGLRMIRRLRMEEEEE 105

The following BLAST results are available for this feature:
BLAST of Tan0018133.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0018133.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650755.11.9e-0751.28hypothetical protein Csa_023869, partial [Cucumis sativus][more]
BLAST of Tan0018133.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDH36.5e-1457.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G535640 PE=4 SV=1[more]
BLAST of Tan0018133.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0018133Tan0018133gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0018133.1-exonTan0018133.1-exon-LG04:81415844..81415905exon
Tan0018133.1-exonTan0018133.1-exon-LG04:81415978..81416236exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0018133.1-cdsTan0018133.1-cds-LG04:81415844..81415905CDS
Tan0018133.1-cdsTan0018133.1-cds-LG04:81415978..81416236CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0018133.1Tan0018133.1-proteinpolypeptide