Tan0018094.1 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCACGGTTTCATCATCAATTCAATCAGCTCCTTCTTTCTTTCCTTCATCTTTAGATTCAGAAGTTCAATTTTAGTTCAATTTTTTTTGTTTTCTTTCTTAAACTACGAAGTTTCCCCACTCTAACTCCTCAATCACTCGCTATAAATTGCTTTGCTAATTCTCCGGCCACTTACTCTGCTGAGTGCTTTTTTCTATAGAATTGTGTCCATTCTGGGGAGGGCCATTTTTTATTAATTAAACAGTTGCTTGCTTCTCTCTTATCCAAAAAGCCAAAAGATGCTTTTTCTGTGTAACTGTCTTCTCAGAATCTTCACGACATTTCTTTAGCTTAAAGAGTTACAGATACCCCCATCTCCAATCCCATTCAGCAAACAGAAAAAAACCCATTTTTTGTTTTGTGTAATTTGCAGAGCTGTGAAATTATGAATCTAAATTTGCCACGGCGGCTTCTGGAAACAGAGTCACAGCAGGGGAACAAGACGGTCAATTCGTCTTATGTCGGAGAGATGAATCTGGATGCGCACATGGTGGTGATACTGGCGGCGTTGTTATGTGCACTAATTGGAGCTCTTGGAGTGAACTCTATTGTACGGTGCGTTTTGAGGTGCGGCTATCGGTTTCGCAGAGAGAGTCCAGAGGAAGCGGCGGCGCGTTTGGCCGCGACAGGGCTTAAGAAGCGAGAATTGAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATGCAAAAATTAAGGGCACGGATTGCGCGATTTGCCTTGGGGACTTTGAACCCGGCGACAAGGTTAGAATGTTGCCCATTTGCAACCATGGATTCCACGTCAGATGCATTGACACGTGGCTGTTGTCTCACTCCTCTTGCCCCAACTGTCGCCATTCGTTGCTGCAGCCACCGGTTAAAGGAAAACAACACGCCGTTGAGGTTTTGCCGCCGCCGCTGCCGGGTTCTTCCTCAAGCGGCCACGTGGTTGTGGTCATATAGAGTAGCATGCCAAGCCACTAATCACTGAAAATTATTTGATGAGGGCGCCAGAATATGGTCGGTAGTTTTAGAATGTTAGATCGTAGATAGAAGAGTTATAAAAGTGTTAAATTTTGTATACAATGATTATTATGGAATAGAAATATTTTTGCATCTAAATCCGAGGTTAATAATTTGTGTTAGTTGTTTTTTGTGCGATTTCTTTGTTGTTGGAATTTTGTGTACATACTCCTTCCATAGACAATATCACATGGGAAGGATTCTTTTTCCTTTTAGTTTTTTGTTATGACAGGTTGAGGATAAG CCCACGGTTTCATCATCAATTCAATCAGCTCCTTCTTTCTTTCCTTCATCTTTAGATTCAGAAGTTCAATTTTAGTTCAATTTTTTTTGTTTTCTTTCTTAAACTACGAAGTTTCCCCACTCTAACTCCTCAATCACTCGCTATAAATTGCTTTGCTAATTCTCCGGCCACTTACTCTGCTGAGTGCTTTTTTCTATAGAATTGTGTCCATTCTGGGGAGGGCCATTTTTTATTAATTAAACAGTTGCTTGCTTCTCTCTTATCCAAAAAGCCAAAAGATGCTTTTTCTGTGTAACTGTCTTCTCAGAATCTTCACGACATTTCTTTAGCTTAAAGAGTTACAGATACCCCCATCTCCAATCCCATTCAGCAAACAGAAAAAAACCCATTTTTTGTTTTGTGTAATTTGCAGAGCTGTGAAATTATGAATCTAAATTTGCCACGGCGGCTTCTGGAAACAGAGTCACAGCAGGGGAACAAGACGGTCAATTCGTCTTATGTCGGAGAGATGAATCTGGATGCGCACATGGTGGTGATACTGGCGGCGTTGTTATGTGCACTAATTGGAGCTCTTGGAGTGAACTCTATTGTACGGTGCGTTTTGAGGTGCGGCTATCGGTTTCGCAGAGAGAGTCCAGAGGAAGCGGCGGCGCGTTTGGCCGCGACAGGGCTTAAGAAGCGAGAATTGAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATGCAAAAATTAAGGGCACGGATTGCGCGATTTGCCTTGGGGACTTTGAACCCGGCGACAAGGTTAGAATGTTGCCCATTTGCAACCATGGATTCCACGTCAGATGCATTGACACGTGGCTGTTGTCTCACTCCTCTTGCCCCAACTGTCGCCATTCGTTGCTGCAGCCACCGGTTAAAGGAAAACAACACGCCGTTGAGGTTTTGCCGCCGCCGCTGCCGGGTTCTTCCTCAAGCGGCCACGTGGTTGTGGTCATATAGAGTAGCATGCCAAGCCACTAATCACTGAAAATTATTTGATGAGGGCGCCAGAATATGGTCGGTAGTTTTAGAATGTTAGATCGTAGATAGAAGAGTTATAAAAGTGTTAAATTTTGTATACAATGATTATTATGGAATAGAAATATTTTTGCATCTAAATCCGAGGTTAATAATTTGTGTTAGTTGTTTTTTGTGCGATTTCTTTGTTGTTGGAATTTTGTGTACATACTCCTTCCATAGACAATATCACATGGGAAGGATTCTTTTTCCTTTTAGTTTTTTGTTATGACAGGTTGAGGATAAG ATGAATCTAAATTTGCCACGGCGGCTTCTGGAAACAGAGTCACAGCAGGGGAACAAGACGGTCAATTCGTCTTATGTCGGAGAGATGAATCTGGATGCGCACATGGTGGTGATACTGGCGGCGTTGTTATGTGCACTAATTGGAGCTCTTGGAGTGAACTCTATTGTACGGTGCGTTTTGAGGTGCGGCTATCGGTTTCGCAGAGAGAGTCCAGAGGAAGCGGCGGCGCGTTTGGCCGCGACAGGGCTTAAGAAGCGAGAATTGAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATGCAAAAATTAAGGGCACGGATTGCGCGATTTGCCTTGGGGACTTTGAACCCGGCGACAAGGTTAGAATGTTGCCCATTTGCAACCATGGATTCCACGTCAGATGCATTGACACGTGGCTGTTGTCTCACTCCTCTTGCCCCAACTGTCGCCATTCGTTGCTGCAGCCACCGGTTAAAGGAAAACAACACGCCGTTGAGGTTTTGCCGCCGCCGCTGCCGGGTTCTTCCTCAAGCGGCCACGTGGTTGTGGTCATATAG MNLNLPRRLLETESQQGNKTVNSSYVGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLRCGYRFRRESPEEAAARLAATGLKKRELSQIPVGVYGSDAKIKGTDCAICLGDFEPGDKVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLPPPLPGSSSSGHVVVVI Homology
BLAST of Tan0018094.1 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 2.5e-42 Identity = 91/160 (56.88%), Postives = 112/160 (70.00%), Query Frame = 0
BLAST of Tan0018094.1 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 8.0e-41 Identity = 87/153 (56.86%), Postives = 105/153 (68.63%), Query Frame = 0
BLAST of Tan0018094.1 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 1.1e-37 Identity = 82/137 (59.85%), Postives = 96/137 (70.07%), Query Frame = 0
BLAST of Tan0018094.1 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 3.6e-33 Identity = 70/151 (46.36%), Postives = 97/151 (64.24%), Query Frame = 0
BLAST of Tan0018094.1 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 2.8e-25 Identity = 75/158 (47.47%), Postives = 94/158 (59.49%), Query Frame = 0
BLAST of Tan0018094.1 vs. NCBI nr
Match: XP_022971293.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima]) HSP 1 Score: 294.3 bits (752), Expect = 7.4e-76 Identity = 154/187 (82.35%), Postives = 163/187 (87.17%), Query Frame = 0
BLAST of Tan0018094.1 vs. NCBI nr
Match: XP_023540727.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 285.0 bits (728), Expect = 4.5e-73 Identity = 150/186 (80.65%), Postives = 157/186 (84.41%), Query Frame = 0
BLAST of Tan0018094.1 vs. NCBI nr
Match: XP_022930638.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027864.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 282.7 bits (722), Expect = 2.2e-72 Identity = 151/187 (80.75%), Postives = 158/187 (84.49%), Query Frame = 0
BLAST of Tan0018094.1 vs. NCBI nr
Match: XP_022157309.1 (RING-H2 finger protein ATL74-like [Momordica charantia]) HSP 1 Score: 240.4 bits (612), Expect = 1.3e-59 Identity = 129/195 (66.15%), Postives = 149/195 (76.41%), Query Frame = 0
BLAST of Tan0018094.1 vs. NCBI nr
Match: KAE8099021.1 (hypothetical protein FH972_017037 [Carpinus fangiana]) HSP 1 Score: 222.2 bits (565), Expect = 3.6e-54 Identity = 116/186 (62.37%), Postives = 134/186 (72.04%), Query Frame = 0
BLAST of Tan0018094.1 vs. ExPASy TrEMBL
Match: A0A6J1I6E6 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE=4 SV=1) HSP 1 Score: 294.3 bits (752), Expect = 3.6e-76 Identity = 154/187 (82.35%), Postives = 163/187 (87.17%), Query Frame = 0
BLAST of Tan0018094.1 vs. ExPASy TrEMBL
Match: A0A6J1EVU3 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 PE=4 SV=1) HSP 1 Score: 282.7 bits (722), Expect = 1.1e-72 Identity = 151/187 (80.75%), Postives = 158/187 (84.49%), Query Frame = 0
BLAST of Tan0018094.1 vs. ExPASy TrEMBL
Match: A0A6J1DW47 (RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111024041 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 6.1e-60 Identity = 129/195 (66.15%), Postives = 149/195 (76.41%), Query Frame = 0
BLAST of Tan0018094.1 vs. ExPASy TrEMBL
Match: A0A5N6RI02 (RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_017037 PE=4 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 1.7e-54 Identity = 116/186 (62.37%), Postives = 134/186 (72.04%), Query Frame = 0
BLAST of Tan0018094.1 vs. ExPASy TrEMBL
Match: A0A2I4E4V2 (RING-H2 finger protein ATL74-like OS=Juglans regia OX=51240 GN=LOC108986291 PE=4 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 1.5e-53 Identity = 113/184 (61.41%), Postives = 134/184 (72.83%), Query Frame = 0
BLAST of Tan0018094.1 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein ) HSP 1 Score: 173.3 bits (438), Expect = 1.8e-43 Identity = 91/160 (56.88%), Postives = 112/160 (70.00%), Query Frame = 0
BLAST of Tan0018094.1 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein ) HSP 1 Score: 168.3 bits (425), Expect = 5.7e-42 Identity = 87/153 (56.86%), Postives = 105/153 (68.63%), Query Frame = 0
BLAST of Tan0018094.1 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein ) HSP 1 Score: 157.9 bits (398), Expect = 7.7e-39 Identity = 82/137 (59.85%), Postives = 96/137 (70.07%), Query Frame = 0
BLAST of Tan0018094.1 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein ) HSP 1 Score: 142.9 bits (359), Expect = 2.6e-34 Identity = 70/151 (46.36%), Postives = 97/151 (64.24%), Query Frame = 0
BLAST of Tan0018094.1 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein ) HSP 1 Score: 116.7 bits (291), Expect = 2.0e-26 Identity = 75/158 (47.47%), Postives = 94/158 (59.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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