Tan0018094 (gene) Snake gourd v1

Overview


Name	Tan0018094
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-H2 finger protein ATL74-like
Location	LG08: 73899418 .. 73900700 (+)
RNA-Seq Expression	Tan0018094
Synteny	Tan0018094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCACGGTTTCATCATCAATTCAATCAGCTCCTTCTTTCTTTCCTTCATCTTTAGATTCAGAAGTTCAATTTTAGTTCAATTTTTTTTGTTTTCTTTCTTAAACTACGAAGTTTCCCCACTCTAACTCCTCAATCACTCGCTATAAATTGCTTTGCTAATTCTCCGGCCACTTACTCTGCTGAGTGCTTTTTTCTATAGAATTGTGTCCATTCTGGGGAGGGCCATTTTTTATTAATTAAACAGTTGCTTGCTTCTCTCTTATCCAAAAAGCCAAAAGATGCTTTTTCTGTGTAACTGTCTTCTCAGAATCTTCACGACATTTCTTTAGCTTAAAGAGTTACAGATACCCCCATCTCCAATCCCATTCAGCAAACAGAAAAAAACCCATTTTTTGTTTTGTGTAATTTGCAGAGCTGTGAAATTATGAATCTAAATTTGCCACGGCGGCTTCTGGAAACAGAGTCACAGCAGGGGAACAAGACGGTCAATTCGTCTTATGTCGGAGAGATGAATCTGGATGCGCACATGGTGGTGATACTGGCGGCGTTGTTATGTGCACTAATTGGAGCTCTTGGAGTGAACTCTATTGTACGGTGCGTTTTGAGGTGCGGCTATCGGTTTCGCAGAGAGAGTCCAGAGGAAGCGGCGGCGCGTTTGGCCGCGACAGGGCTTAAGAAGCGAGAATTGAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATGCAAAAATTAAGGGCACGGATTGCGCGATTTGCCTTGGGGACTTTGAACCCGGCGACAAGGTTAGAATGTTGCCCATTTGCAACCATGGATTCCACGTCAGATGCATTGACACGTGGCTGTTGTCTCACTCCTCTTGCCCCAACTGTCGCCATTCGTTGCTGCAGCCACCGGTTAAAGGAAAACAACACGCCGTTGAGGTTTTGCCGCCGCCGCTGCCGGGTTCTTCCTCAAGCGGCCACGTGGTTGTGGTCATATAGAGTAGCATGCCAAGCCACTAATCACTGAAAATTATTTGATGAGGGCGCCAGAATATGGTCGGTAGTTTTAGAATGTTAGATCGTAGATAGAAGAGTTATAAAAGTGTTAAATTTTGTATACAATGATTATTATGGAATAGAAATATTTTTGCATCTAAATCCGAGGTTAATAATTTGTGTTAGTTGTTTTTTGTGCGATTTCTTTGTTGTTGGAATTTTGTGTACATACTCCTTCCATAGACAATATCACATGGGAAGGATTCTTTTTCCTTTTAGTTTTTTGTTATGACAGGTTGAGGATAAG

mRNA sequence

CCCACGGTTTCATCATCAATTCAATCAGCTCCTTCTTTCTTTCCTTCATCTTTAGATTCAGAAGTTCAATTTTAGTTCAATTTTTTTTGTTTTCTTTCTTAAACTACGAAGTTTCCCCACTCTAACTCCTCAATCACTCGCTATAAATTGCTTTGCTAATTCTCCGGCCACTTACTCTGCTGAGTGCTTTTTTCTATAGAATTGTGTCCATTCTGGGGAGGGCCATTTTTTATTAATTAAACAGTTGCTTGCTTCTCTCTTATCCAAAAAGCCAAAAGATGCTTTTTCTGTGTAACTGTCTTCTCAGAATCTTCACGACATTTCTTTAGCTTAAAGAGTTACAGATACCCCCATCTCCAATCCCATTCAGCAAACAGAAAAAAACCCATTTTTTGTTTTGTGTAATTTGCAGAGCTGTGAAATTATGAATCTAAATTTGCCACGGCGGCTTCTGGAAACAGAGTCACAGCAGGGGAACAAGACGGTCAATTCGTCTTATGTCGGAGAGATGAATCTGGATGCGCACATGGTGGTGATACTGGCGGCGTTGTTATGTGCACTAATTGGAGCTCTTGGAGTGAACTCTATTGTACGGTGCGTTTTGAGGTGCGGCTATCGGTTTCGCAGAGAGAGTCCAGAGGAAGCGGCGGCGCGTTTGGCCGCGACAGGGCTTAAGAAGCGAGAATTGAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATGCAAAAATTAAGGGCACGGATTGCGCGATTTGCCTTGGGGACTTTGAACCCGGCGACAAGGTTAGAATGTTGCCCATTTGCAACCATGGATTCCACGTCAGATGCATTGACACGTGGCTGTTGTCTCACTCCTCTTGCCCCAACTGTCGCCATTCGTTGCTGCAGCCACCGGTTAAAGGAAAACAACACGCCGTTGAGGTTTTGCCGCCGCCGCTGCCGGGTTCTTCCTCAAGCGGCCACGTGGTTGTGGTCATATAGAGTAGCATGCCAAGCCACTAATCACTGAAAATTATTTGATGAGGGCGCCAGAATATGGTCGGTAGTTTTAGAATGTTAGATCGTAGATAGAAGAGTTATAAAAGTGTTAAATTTTGTATACAATGATTATTATGGAATAGAAATATTTTTGCATCTAAATCCGAGGTTAATAATTTGTGTTAGTTGTTTTTTGTGCGATTTCTTTGTTGTTGGAATTTTGTGTACATACTCCTTCCATAGACAATATCACATGGGAAGGATTCTTTTTCCTTTTAGTTTTTTGTTATGACAGGTTGAGGATAAG

Coding sequence (CDS)

ATGAATCTAAATTTGCCACGGCGGCTTCTGGAAACAGAGTCACAGCAGGGGAACAAGACGGTCAATTCGTCTTATGTCGGAGAGATGAATCTGGATGCGCACATGGTGGTGATACTGGCGGCGTTGTTATGTGCACTAATTGGAGCTCTTGGAGTGAACTCTATTGTACGGTGCGTTTTGAGGTGCGGCTATCGGTTTCGCAGAGAGAGTCCAGAGGAAGCGGCGGCGCGTTTGGCCGCGACAGGGCTTAAGAAGCGAGAATTGAGTCAGATTCCGGTTGGGGTTTATGGAAGTGATGCAAAAATTAAGGGCACGGATTGCGCGATTTGCCTTGGGGACTTTGAACCCGGCGACAAGGTTAGAATGTTGCCCATTTGCAACCATGGATTCCACGTCAGATGCATTGACACGTGGCTGTTGTCTCACTCCTCTTGCCCCAACTGTCGCCATTCGTTGCTGCAGCCACCGGTTAAAGGAAAACAACACGCCGTTGAGGTTTTGCCGCCGCCGCTGCCGGGTTCTTCCTCAAGCGGCCACGTGGTTGTGGTCATATAG

Protein sequence

MNLNLPRRLLETESQQGNKTVNSSYVGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLRCGYRFRRESPEEAAARLAATGLKKRELSQIPVGVYGSDAKIKGTDCAICLGDFEPGDKVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLPPPLPGSSSSGHVVVVI

Homology

[Close]

BLAST of Tan0018094 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.5e-42
Identity = 91/160 (56.88%), Postives = 112/160 (70.00%), Query Frame = 0


Query: 8   RLLETESQQGNKTVNS----SYVGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLRCG 67
           RLL      GN+T  S     Y  +MN DA+MV+ILAALLCALI ALG+NSI+RC +RCG
Sbjct: 3   RLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCG 62

Query: 68  YRFRRESPEEAAARLA-ATGLKKRELSQIPVGVYGS-DAKIKGTDCAICLGDFEPGDKVR 127
           +     S   AA  +A   GLKKREL + PV  YGS + KI  T+CAICLG+F  G++VR
Sbjct: 63  FGL---SSSAAAGTVADRAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVR 122

Query: 128 MLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQ 162
           +LP CNH FH+ CIDTWL+SHSSCPNCRHSL++  V G +
Sbjct: 123 VLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIEVHVAGSE 159

[Close]

BLAST of Tan0018094 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.0e-41
Identity = 87/153 (56.86%), Postives = 105/153 (68.63%), Query Frame = 0


Query: 17  GNKTVNSSYVGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLRCGYRFR-RESPEEAA 76
           G+   N+  +  M  D HMV+ILAALLCALI ALG+NS++RCVLRC  RF   E P +  
Sbjct: 25  GDSVSNNKNIASM--DTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTN 84

Query: 77  ARLAATGLKKRELSQIPVGVYGSDAKIKGTDCAICLGDFEPGDKVRMLPICNHGFHVRCI 136
           A + A G+KKR L  IPV  Y  + K+K T+C ICLGDF  G+ VR+LP CNHGFHV+CI
Sbjct: 85  ANV-AKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCI 144

Query: 137 DTWLLSHSSCPNCRHSLL--QPPVKGKQHAVEV 167
           DTWLLSHSSCP CR SLL  Q P  G +   +V
Sbjct: 145 DTWLLSHSSCPTCRQSLLEHQTPANGSRRGDDV 174

[Close]

BLAST of Tan0018094 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-37
Identity = 82/137 (59.85%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 26  VGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLRCGYRFRRESPEEAAAR-------- 85
           + +   D +MV+ILAALLCALI AL +NS +RCVLR   RF  +     A+         
Sbjct: 24  INDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRL 83

Query: 86  LAATGLKKRELSQIPVGVYGSD-AKIKGTDCAICLGDFEPGDKVRMLPICNHGFHVRCID 145
            AATGLKK+ L QIPVG+YGS    +K T+C ICLGDFE G+KVR+LP CNHGFHVRCID
Sbjct: 84  AAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCID 143

Query: 146 TWLLSHSSCPNCRHSLL 154
           TWLLS SSCP CR SLL
Sbjct: 144 TWLLSRSSCPTCRQSLL 160

[Close]

BLAST of Tan0018094 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.6e-33
Identity = 70/151 (46.36%), Postives = 97/151 (64.24%), Query Frame = 0


Query: 7   RRLLETESQQGNKTVNSSYVGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLRCGYRF 66
           R+LL     Q      S YVG+ N DA++V++L+ LLCAL+ +LG+NSI+RC LRC    
Sbjct: 28  RKLLFHTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLV 87

Query: 67  RRES-PEEAAARLAATGLKKRELSQIPVGVYGSDAKIKG--TDCAICLGDFEPGDKVRML 126
             E+  +    RL  TG+K++ L       Y ++  + G  T+CAICL +F   ++V++L
Sbjct: 88  PSEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLL 147

Query: 127 PICNHGFHVRCIDTWLLSHSSCPNCRHSLLQ 155
           P C+HGFHVRCID WL SHSSCP CRH L+Q
Sbjct: 148 PTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of Tan0018094 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-25
Identity = 75/158 (47.47%), Postives = 94/158 (59.49%), Query Frame = 0


Query: 31  LDAHMVVILAALLCALIGALGVNSIVRCV----LRCGYR----FRRESPEEAAARLAATG 90
           L++ +VVILAALLCALI  LG+ ++ RCV    L  G R     + +SP+   A  A  G
Sbjct: 26  LNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSPQPPVA-AANKG 85

Query: 91  LKKRELSQIPVGVYG--SDAKIKGTDCAICLGDFEPGDKVRMLPICNHGFHVRCIDTWLL 150
           LKK+ L  +P   +   S    K  +CAICL +F  GD++R+LP C HGFHV CIDTWL 
Sbjct: 86  LKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLG 145

Query: 151 SHSSCPNCRHSLLQPPVKGKQHAVEVLPPPLPGSSSSG 179
           SHSSCP+CR  L    V  + H        LPGSSSSG
Sbjct: 146 SHSSCPSCRQIL----VVARCHKC----GGLPGSSSSG 174

[Close]

BLAST of Tan0018094 vs. NCBI nr
Match: XP_022971293.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 294.3 bits (752), Expect = 7.4e-76
Identity = 154/187 (82.35%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 1   MNLNLPRRLLETESQQGNKTVNSS-YVGEMNLDAHMVVILAALLCALIGALGVNSIVRCV 60
           M+ NLPRRLL TE+ QGN T NSS YVGEMNLDAHMVVILAALL ALIGALGVN++VRCV
Sbjct: 1   MDPNLPRRLLATEAVQGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNALVRCV 60

Query: 61  LRCGYRFRRESPEEAAARLAATGLKKRELSQIPVGVYGSD-AKIKGTDCAICLGDFEPGD 120
           L  G+RFR E PEE AARLAA GLKKRELSQIPVGVYGSD AKIKGTDCAICLG+FE GD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLP-PPLPGSSSS 180
           KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLL PPVKGK+ AV V P PP P  S+S
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDAVTVSPAPPPPRGSAS 180

Query: 181 GHVVVVI 185
            HVVVV+
Sbjct: 181 SHVVVVV 187

[Close]

BLAST of Tan0018094 vs. NCBI nr
Match: XP_023540727.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.0 bits (728), Expect = 4.5e-73
Identity = 150/186 (80.65%), Postives = 157/186 (84.41%), Query Frame = 0


Query: 1   MNLNLPRRLLETESQQGNKTVNSS-YVGEMNLDAHMVVILAALLCALIGALGVNSIVRCV 60
           M+ NLPRRLL TE   GN T NSS YVGEMNLDAHMVVILAALL ALIGALGVNS+VRCV
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 61  LRCGYRFRRESPEEAAARLAATGLKKRELSQIPVGVYGSD-AKIKGTDCAICLGDFEPGD 120
           L  G+RFR E PEE AARLAA GLKKRELSQIPVGVYGSD AKIKGTDCAICLG+FE GD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLPPPLPGSSSSG 180
           KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLL PPVKGK+    V PP     S+S 
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQ---GSASS 180

Query: 181 HVVVVI 185
           HVVVV+
Sbjct: 181 HVVVVV 183

[Close]

BLAST of Tan0018094 vs. NCBI nr
Match: XP_022930638.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027864.1 RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.7 bits (722), Expect = 2.2e-72
Identity = 151/187 (80.75%), Postives = 158/187 (84.49%), Query Frame = 0


Query: 1   MNLNLPRRLLETESQQGNKTVNSS-YVGEMNLDAHMVVILAALLCALIGALGVNSIVRCV 60
           M+ NLPRRLL TE   GN T NSS YVGEMNLDAHMVVILAALL ALIGALGVNS+VRCV
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 61  LRCGYRFRRESPEEAAARLAATGLKKRELSQIPVGVYGSD-AKIKGTDCAICLGDFEPGD 120
           L  G+RF RE PEE AARLAA GLKKRELSQIPVGVYGSD AKIKGTDCAICLG+FE GD
Sbjct: 61  LSLGFRF-RERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLPP-PLPGSSSS 180
           KVRMLP CNHGFHVRCIDTWLLSHSSCPNCRHSLL PPVKGK+    V PP P P  S+S
Sbjct: 121 KVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSAS 180

Query: 181 GHVVVVI 185
            HVVVV+
Sbjct: 181 SHVVVVV 186

[Close]

BLAST of Tan0018094 vs. NCBI nr
Match: XP_022157309.1 (RING-H2 finger protein ATL74-like [Momordica charantia])

HSP 1 Score: 240.4 bits (612), Expect = 1.3e-59
Identity = 129/195 (66.15%), Postives = 149/195 (76.41%), Query Frame = 0


Query: 1   MNLNLPRRLLETE----SQQGNKTVNSSYVGEMNLDAHMVVILAALLCALIGALGVNSIV 60
           M  NL RRLL TE      + N+T +S+YVGEMNLDA+MVVILAAL CALIGALG+NSIV
Sbjct: 1   MEQNLARRLLATELGNTPSEANRTGDSAYVGEMNLDANMVVILAALSCALIGALGMNSIV 60

Query: 61  RCVLRCGYRFRRESPEEAAARLAATGLKKRELSQIPVGVY-------GSDAKIKGTDCAI 120
           RCVLRC      +SPE AA   AATGLKKR+L QIPVGVY       G+   IKGTDCAI
Sbjct: 61  RCVLRCS-----QSPEGAA---AATGLKKRDLGQIPVGVYGIGGGDGGNMVNIKGTDCAI 120

Query: 121 CLGDFEPGDKVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLPP 180
           CLG+F+PGDK+RMLP+CNHGFHVRCIDTWLLSHSSCPNCRHSLL PP+K K+ A    PP
Sbjct: 121 CLGEFQPGDKLRMLPVCNHGFHVRCIDTWLLSHSSCPNCRHSLLHPPLKVKEIAAVSQPP 180

Query: 181 PLPGSSSSGHVVVVI 185
           P   +S+  HVV+++
Sbjct: 181 P-ASASTQAHVVLLL 186

[Close]

BLAST of Tan0018094 vs. NCBI nr
Match: KAE8099021.1 (hypothetical protein FH972_017037 [Carpinus fangiana])

HSP 1 Score: 222.2 bits (565), Expect = 3.6e-54
Identity = 116/186 (62.37%), Postives = 134/186 (72.04%), Query Frame = 0


Query: 7   RRLLETES-----QQGNKTVNSSYVGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLR 66
           RRLLET+        GN+T +SSY+ E N D +MV+ILAALLCALI ALG+NSIVRC LR
Sbjct: 3   RRLLETDQLNLPPDNGNRTRDSSYISETNFDTNMVIILAALLCALICALGLNSIVRCALR 62

Query: 67  CGYRFRRESPEEAAARLAATGLKKRELSQIPVGVYGSDAKIKGTDCAICLGDFEPGDKVR 126
           C  RF  E+ E+ AARLAATGLKKR+L QIPV +YGS   IK T+C ICLG+FE G+KVR
Sbjct: 63  CSRRFALETAEQTAARLAATGLKKRDLRQIPVAIYGSGVNIKATECPICLGEFEDGEKVR 122

Query: 127 MLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLPPPLPGSSS----S 184
           +LP CNHGFHVRCIDTWLLSHSSCPNCRHSLL  P        +V      G+ S    S
Sbjct: 123 VLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLDHPSSSSGANQQVRQAESTGNGSAATQS 182

[Close]

BLAST of Tan0018094 vs. ExPASy TrEMBL
Match: A0A6J1I6E6 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.6e-76
Identity = 154/187 (82.35%), Postives = 163/187 (87.17%), Query Frame = 0


Query: 1   MNLNLPRRLLETESQQGNKTVNSS-YVGEMNLDAHMVVILAALLCALIGALGVNSIVRCV 60
           M+ NLPRRLL TE+ QGN T NSS YVGEMNLDAHMVVILAALL ALIGALGVN++VRCV
Sbjct: 1   MDPNLPRRLLATEAVQGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNALVRCV 60

Query: 61  LRCGYRFRRESPEEAAARLAATGLKKRELSQIPVGVYGSD-AKIKGTDCAICLGDFEPGD 120
           L  G+RFR E PEE AARLAA GLKKRELSQIPVGVYGSD AKIKGTDCAICLG+FE GD
Sbjct: 61  LSLGFRFRTERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLP-PPLPGSSSS 180
           KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLL PPVKGK+ AV V P PP P  S+S
Sbjct: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDAVTVSPAPPPPRGSAS 180

Query: 181 GHVVVVI 185
            HVVVV+
Sbjct: 181 SHVVVVV 187

[Close]

BLAST of Tan0018094 vs. ExPASy TrEMBL
Match: A0A6J1EVU3 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.1e-72
Identity = 151/187 (80.75%), Postives = 158/187 (84.49%), Query Frame = 0


Query: 1   MNLNLPRRLLETESQQGNKTVNSS-YVGEMNLDAHMVVILAALLCALIGALGVNSIVRCV 60
           M+ NLPRRLL TE   GN T NSS YVGEMNLDAHMVVILAALL ALIGALGVNS+VRCV
Sbjct: 1   MDPNLPRRLLATEPVPGNTTANSSYYVGEMNLDAHMVVILAALLFALIGALGVNSLVRCV 60

Query: 61  LRCGYRFRRESPEEAAARLAATGLKKRELSQIPVGVYGSD-AKIKGTDCAICLGDFEPGD 120
           L  G+RF RE PEE AARLAA GLKKRELSQIPVGVYGSD AKIKGTDCAICLG+FE GD
Sbjct: 61  LSLGFRF-RERPEETAARLAAIGLKKRELSQIPVGVYGSDCAKIKGTDCAICLGEFEVGD 120

Query: 121 KVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLPP-PLPGSSSS 180
           KVRMLP CNHGFHVRCIDTWLLSHSSCPNCRHSLL PPVKGK+    V PP P P  S+S
Sbjct: 121 KVRMLPNCNHGFHVRCIDTWLLSHSSCPNCRHSLLLPPVKGKRDGATVSPPQPPPQGSAS 180

Query: 181 GHVVVVI 185
            HVVVV+
Sbjct: 181 SHVVVVV 186

[Close]

BLAST of Tan0018094 vs. ExPASy TrEMBL
Match: A0A6J1DW47 (RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111024041 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 6.1e-60
Identity = 129/195 (66.15%), Postives = 149/195 (76.41%), Query Frame = 0


Query: 1   MNLNLPRRLLETE----SQQGNKTVNSSYVGEMNLDAHMVVILAALLCALIGALGVNSIV 60
           M  NL RRLL TE      + N+T +S+YVGEMNLDA+MVVILAAL CALIGALG+NSIV
Sbjct: 1   MEQNLARRLLATELGNTPSEANRTGDSAYVGEMNLDANMVVILAALSCALIGALGMNSIV 60

Query: 61  RCVLRCGYRFRRESPEEAAARLAATGLKKRELSQIPVGVY-------GSDAKIKGTDCAI 120
           RCVLRC      +SPE AA   AATGLKKR+L QIPVGVY       G+   IKGTDCAI
Sbjct: 61  RCVLRCS-----QSPEGAA---AATGLKKRDLGQIPVGVYGIGGGDGGNMVNIKGTDCAI 120

Query: 121 CLGDFEPGDKVRMLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLPP 180
           CLG+F+PGDK+RMLP+CNHGFHVRCIDTWLLSHSSCPNCRHSLL PP+K K+ A    PP
Sbjct: 121 CLGEFQPGDKLRMLPVCNHGFHVRCIDTWLLSHSSCPNCRHSLLHPPLKVKEIAAVSQPP 180

Query: 181 PLPGSSSSGHVVVVI 185
           P   +S+  HVV+++
Sbjct: 181 P-ASASTQAHVVLLL 186

[Close]

BLAST of Tan0018094 vs. ExPASy TrEMBL
Match: A0A5N6RI02 (RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_017037 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.7e-54
Identity = 116/186 (62.37%), Postives = 134/186 (72.04%), Query Frame = 0


Query: 7   RRLLETES-----QQGNKTVNSSYVGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLR 66
           RRLLET+        GN+T +SSY+ E N D +MV+ILAALLCALI ALG+NSIVRC LR
Sbjct: 3   RRLLETDQLNLPPDNGNRTRDSSYISETNFDTNMVIILAALLCALICALGLNSIVRCALR 62

Query: 67  CGYRFRRESPEEAAARLAATGLKKRELSQIPVGVYGSDAKIKGTDCAICLGDFEPGDKVR 126
           C  RF  E+ E+ AARLAATGLKKR+L QIPV +YGS   IK T+C ICLG+FE G+KVR
Sbjct: 63  CSRRFALETAEQTAARLAATGLKKRDLRQIPVAIYGSGVNIKATECPICLGEFEDGEKVR 122

Query: 127 MLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLPPPLPGSSS----S 184
           +LP CNHGFHVRCIDTWLLSHSSCPNCRHSLL  P        +V      G+ S    S
Sbjct: 123 VLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLDHPSSSSGANQQVRQAESTGNGSAATQS 182

[Close]

BLAST of Tan0018094 vs. ExPASy TrEMBL
Match: A0A2I4E4V2 (RING-H2 finger protein ATL74-like OS=Juglans regia OX=51240 GN=LOC108986291 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.5e-53
Identity = 113/184 (61.41%), Postives = 134/184 (72.83%), Query Frame = 0


Query: 7   RRLLETE----SQQGNKTVNSSYVGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLRC 66
           RRL+ETE     + GNK +  SY+ E N D +MV+ILAALLCALI ALG+NSIVRC  RC
Sbjct: 3   RRLVETELSLPPENGNK-MRDSYISETNFDTNMVIILAALLCALICALGLNSIVRCAFRC 62

Query: 67  GYRFRRESPEEAAARLAATGLKKRELSQIPVGVYGSDAKIKGTDCAICLGDFEPGDKVRM 126
             RF  E+P++ AARLAATGLKKR+L QIPV +YGS   IK T+CAICLG+FE G+ VR+
Sbjct: 63  SRRFALETPDQTAARLAATGLKKRDLRQIPVAIYGSGVNIKATECAICLGEFEDGENVRV 122

Query: 127 LPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQHAVEVLP--PPLPGSSSSGHV 185
           LP CNHGFHV CIDTWLLSHSSCPNCRHSL + PV G     +V P  P   G+     V
Sbjct: 123 LPKCNHGFHVSCIDTWLLSHSSCPNCRHSLREHPVTGSGTNPQVSPAEPSGNGAGRRDSV 182

[Close]

BLAST of Tan0018094 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-43
Identity = 91/160 (56.88%), Postives = 112/160 (70.00%), Query Frame = 0


Query: 8   RLLETESQQGNKTVNS----SYVGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLRCG 67
           RLL      GN+T  S     Y  +MN DA+MV+ILAALLCALI ALG+NSI+RC +RCG
Sbjct: 3   RLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCG 62

Query: 68  YRFRRESPEEAAARLA-ATGLKKRELSQIPVGVYGS-DAKIKGTDCAICLGDFEPGDKVR 127
           +     S   AA  +A   GLKKREL + PV  YGS + KI  T+CAICLG+F  G++VR
Sbjct: 63  FGL---SSSAAAGTVADRAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVR 122

Query: 128 MLPICNHGFHVRCIDTWLLSHSSCPNCRHSLLQPPVKGKQ 162
           +LP CNH FH+ CIDTWL+SHSSCPNCRHSL++  V G +
Sbjct: 123 VLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIEVHVAGSE 159

[Close]

BLAST of Tan0018094 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 168.3 bits (425), Expect = 5.7e-42
Identity = 87/153 (56.86%), Postives = 105/153 (68.63%), Query Frame = 0


Query: 17  GNKTVNSSYVGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLRCGYRFR-RESPEEAA 76
           G+   N+  +  M  D HMV+ILAALLCALI ALG+NS++RCVLRC  RF   E P +  
Sbjct: 25  GDSVSNNKNIASM--DTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTN 84

Query: 77  ARLAATGLKKRELSQIPVGVYGSDAKIKGTDCAICLGDFEPGDKVRMLPICNHGFHVRCI 136
           A + A G+KKR L  IPV  Y  + K+K T+C ICLGDF  G+ VR+LP CNHGFHV+CI
Sbjct: 85  ANV-AKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCI 144

Query: 137 DTWLLSHSSCPNCRHSLL--QPPVKGKQHAVEV 167
           DTWLLSHSSCP CR SLL  Q P  G +   +V
Sbjct: 145 DTWLLSHSSCPTCRQSLLEHQTPANGSRRGDDV 174

[Close]

BLAST of Tan0018094 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 157.9 bits (398), Expect = 7.7e-39
Identity = 82/137 (59.85%), Postives = 96/137 (70.07%), Query Frame = 0


Query: 26  VGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLRCGYRFRRESPEEAAAR-------- 85
           + +   D +MV+ILAALLCALI AL +NS +RCVLR   RF  +     A+         
Sbjct: 24  INDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRL 83

Query: 86  LAATGLKKRELSQIPVGVYGSD-AKIKGTDCAICLGDFEPGDKVRMLPICNHGFHVRCID 145
            AATGLKK+ L QIPVG+YGS    +K T+C ICLGDFE G+KVR+LP CNHGFHVRCID
Sbjct: 84  AAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCID 143

Query: 146 TWLLSHSSCPNCRHSLL 154
           TWLLS SSCP CR SLL
Sbjct: 144 TWLLSRSSCPTCRQSLL 160

[Close]

BLAST of Tan0018094 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 142.9 bits (359), Expect = 2.6e-34
Identity = 70/151 (46.36%), Postives = 97/151 (64.24%), Query Frame = 0


Query: 7   RRLLETESQQGNKTVNSSYVGEMNLDAHMVVILAALLCALIGALGVNSIVRCVLRCGYRF 66
           R+LL     Q      S YVG+ N DA++V++L+ LLCAL+ +LG+NSI+RC LRC    
Sbjct: 28  RKLLFHTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLV 87

Query: 67  RRES-PEEAAARLAATGLKKRELSQIPVGVYGSDAKIKG--TDCAICLGDFEPGDKVRML 126
             E+  +    RL  TG+K++ L       Y ++  + G  T+CAICL +F   ++V++L
Sbjct: 88  PSEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLL 147

Query: 127 PICNHGFHVRCIDTWLLSHSSCPNCRHSLLQ 155
           P C+HGFHVRCID WL SHSSCP CRH L+Q
Sbjct: 148 PTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of Tan0018094 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-26
Identity = 75/158 (47.47%), Postives = 94/158 (59.49%), Query Frame = 0


Query: 31  LDAHMVVILAALLCALIGALGVNSIVRCV----LRCGYR----FRRESPEEAAARLAATG 90
           L++ +VVILAALLCALI  LG+ ++ RCV    L  G R     + +SP+   A  A  G
Sbjct: 26  LNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSPQPPVA-AANKG 85

Query: 91  LKKRELSQIPVGVYG--SDAKIKGTDCAICLGDFEPGDKVRMLPICNHGFHVRCIDTWLL 150
           LKK+ L  +P   +   S    K  +CAICL +F  GD++R+LP C HGFHV CIDTWL 
Sbjct: 86  LKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLG 145

Query: 151 SHSSCPNCRHSLLQPPVKGKQHAVEVLPPPLPGSSSSG 179
           SHSSCP+CR  L    V  + H        LPGSSSSG
Sbjct: 146 SHSSCPSCRQIL----VVARCHKC----GGLPGSSSSG 174

The following BLAST results are available for this feature:

BLAST of Tan0018094 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	2.5e-42	56.88	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9FLC6	8.0e-41	56.86	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9SG96	1.1e-37	59.85	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q6NQG7	3.6e-33	46.36	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q9LM69	2.8e-25	47.47	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]

BLAST of Tan0018094 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971293.1	7.4e-76	82.35	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]
XP_023540727.1	4.5e-73	80.65	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930638.1	2.2e-72	80.75	RING-H2 finger protein ATL74-like [Cucurbita moschata] >KAG6596310.1 RING-H2 fin...	[more]
XP_022157309.1	1.3e-59	66.15	RING-H2 finger protein ATL74-like [Momordica charantia]	[more]
KAE8099021.1	3.6e-54	62.37	hypothetical protein FH972_017037 [Carpinus fangiana]	[more]

BLAST of Tan0018094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6E6	3.6e-76	82.35	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE...	[more]
A0A6J1EVU3	1.1e-72	80.75	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 ...	[more]
A0A6J1DW47	6.1e-60	66.15	RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111024041...	[more]
A0A5N6RI02	1.7e-54	62.37	RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0170...	[more]
A0A2I4E4V2	1.5e-53	61.41	RING-H2 finger protein ATL74-like OS=Juglans regia OX=51240 GN=LOC108986291 PE=4...	[more]

BLAST of Tan0018094 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	1.8e-43	56.88	RING/U-box superfamily protein	[more]
AT5G05280.1	5.7e-42	56.86	RING/U-box superfamily protein	[more]
AT3G10910.1	7.7e-39	59.85	RING/U-box superfamily protein	[more]
AT1G49230.1	2.6e-34	46.36	RING/U-box superfamily protein	[more]
AT1G20823.1	2.0e-26	47.47	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 9.6E-7 score: 38.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..149 e-value: 1.5E-13 score: 50.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 11.589345
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 63..154 e-value: 4.6E-21 score: 76.3
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 7..162
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 7..162
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 107..149 e-value: 6.14326E-17 score: 68.7925
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 92..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018094.1	Tan0018094.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane