Tan0018084.3 (mRNA) Snake gourd v1

Overview


Name	Tan0018084.3
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Bromo domain-containing protein
Location	LG07: 69376111 .. 69378007 (+)
Sequence length	571
RNA-Seq Expression	Tan0018084.3
Synteny	Tan0018084.3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTACTTAAAACTCGAGATGATATTGAAGTAGATTTGTTAATGTTTGAGATAGTTCCAAGTTATACTCAATGGACAATGCATGGTGAAGAATCTACTCAAGAAAAAATGGTAAGTAGTGACACTTTTATCTTTAATATGAGAAATAATGGAATGGTTGTGTTTATGTGTTGTGTGTATTGCTATTTGCAGCACTGGCGAGGCTCTAAGCATGTTTCGTAATGAATTTTGCTTAATTCATTCATAGTTTTGAACATGTTTCTTAATGAATGGGTTGTATTAACTCATAAGCTTTATTAACCCATAAGCATGAAAACTAACATGGCAGGGAGCTTTTATCTAGATTCCAGTTTTGATCCATTAAAACTTACACATGCATTTTCATTGTTTTGGTCTGATTTACCCCAAAAAAGAGTTGAATGGAGATGAGGGTGAAACTTGTTCTGTTTTGTAGCTAGTTAGAGGTTTCTCTCTCCTCTATCTCTCTTTTTCTCTTTCTCAAGTGTGTGTTAATTCTTAAACCTTCTCTTAAATCTCTAATTTCTCTTTTTCTCTTTCTCAAGTGGGTGTTAATTCTTATACTTTCTCTTAAGACTCTAACTCCAGGATAGTAAAGGAAGGGTTGGCAAGATTTGCCTTTAATAGAGAATAGTCTCATTCTCATAAACTGCAGGTCCAGTTAGAAATTTGTTTGTGATGATTTGCTCTCAGAATGTTAATTAAGACACTGAAAGATTAACAATAGAATCCATGGGGGCAGACTTAGAGAGTTTGAGGATACATGTGACTGAACTTCTTGCCTCCTGCCATTGTTCTGCCATTGGCAATTATTTCTGCCAATTAAGTGGAAATTGAAATTTGTTTTTACTATCTGACTTGAGGAAATTGGCAGGAAAAAAAAGAAACTTTGATTCCTTCATTACTGATCTTTGCATCCTCTCGCTGTGTTTGAAAATGAACGTTTTGGATTGGAGTAGCTTTGGGTGTGAGAAGGAAGCGGTTTTGAAGTTGAATTTTGCAGTAAATTGGAGTTTGATTTACTGGCTACAACCATAGGAAAAATGAAAGAAGAATTGAGAAAGAAAGACAGAAAATGGACCTACAATATTAATAATCTGCCATCATTGTTGAAAGAGAAGATATATGGTGACGTGTTAGCCAACCATGAAGCAAATCCTTAATATTTTTTAATTAAATTAGATCGGCGTCAAATAAGTCGTTGAATTGATTATTGAACTTTTAGTTTTGTATTTAGTACCTTACTAAACTTTAAATAGTGTCTCAATTAACCTTGACAAACAAGTTATATGCTTCCTATCTATGCAAATCATTGACCTTTTTTTCTTCCTTTTTAACTTTGTGTTTTCTATGCAATTATCTATATCTTTTTCTTCTCTATACCTATAAATGAGGTTAATTTTGATTTTGTATTTGTAGTCGTAACTCAAATTATATGCCTCAAATGGTTGATGGTACACTTGACATGAACGAGGACAAGATTTTTGTGCAAGTTTTTGGACCAGAGAAGTATGGACGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTGTTTGGATCATCTTCCAATGTACGTGATCTTGAGCGTCGTCTTAATGAGTCAGAACAACGTCTTCAAGAATTTGAACGACAAAGAAAAATCGAGGTACAAGCCTTCAAAGATCAAATTGTTGAATTAGAAAATCATTTTGAGGATAGATTTAAAACAATGATGGCAGAGATGCGTAAACAATAGTAACATTTGTTACTAATTGATTGTGTAGTAGTTAAATGTTATAGAACTTTTGTAGTTATTTTGTCTATACAAAAAAATTTATGAGATCATGTCAAAATTATTAGCTACTTTCAGATATCTAATTTTACATTCATCTTAAA

mRNA sequence

AGTACTTAAAACTCGAGATGATATTGAAGTAGATTTGTTAATGTTTGAGATAGTTCCAAGTTATACTCAATGGACAATGCATGGTGAAGAATCTACTCAAGAAAAAATGTCGTAACTCAAATTATATGCCTCAAATGGTTGATGGTACACTTGACATGAACGAGGACAAGATTTTTGTGCAAGTTTTTGGACCAGAGAAGTATGGACGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTGTTTGGATCATCTTCCAATGTACGTGATCTTGAGCGTCGTCTTAATGAGTCAGAACAACGTCTTCAAGAATTTGAACGACAAAGAAAAATCGAGGTACAAGCCTTCAAAGATCAAATTGTTGAATTAGAAAATCATTTTGAGGATAGATTTAAAACAATGATGGCAGAGATGCGTAAACAATAGTAACATTTGTTACTAATTGATTGTGTAGTAGTTAAATGTTATAGAACTTTTGTAGTTATTTTGTCTATACAAAAAAATTTATGAGATCATGTCAAAATTATTAGCTACTTTCAGATATCTAATTTTACATTCATCTTAAA

Coding sequence (CDS)

ATGGTGAAGAATCTACTCAAGAAAAAATGTCGTAACTCAAATTATATGCCTCAAATGGTTGATGGTACACTTGACATGAACGAGGACAAGATTTTTGTGCAAGTTTTTGGACCAGAGAAGTATGGACGTGTTCGTGGTTATGGGGTAGGTGTTACTCCTTCTGAGTTGTTTGGATCATCTTCCAATGTACGTGATCTTGAGCGTCGTCTTAATGAGTCAGAACAACGTCTTCAAGAATTTGAACGACAAAGAAAAATCGAGGTACAAGCCTTCAAAGATCAAATTGTTGAATTAGAAAATCATTTTGAGGATAGATTTAAAACAATGATGGCAGAGATGCGTAAACAATAG

Protein sequence

MVKNLLKKKCRNSNYMPQMVDGTLDMNEDKIFVQVFGPEKYGRVRGYGVGVTPSELFGSSSNVRDLERRLNESEQRLQEFERQRKIEVQAFKDQIVELENHFEDRFKTMMAEMRKQ

Homology

[Close]

BLAST of Tan0018084.3 vs. NCBI nr
Match: XP_038904040.1 (uncharacterized protein LOC120090445 [Benincasa hispida])

HSP 1 Score: 147.5 bits (371), Expect = 7.1e-32
Identity = 78/117 (66.67%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 7   KKKCRNSNYMPQMVDGTLDMNEDKIFVQVFGPEKYGRVRGYGVGVTPSELFGSSSNVRDL 66
           +K  +  +Y  Q++DGTLDMNED+ FV+VFGPEK+G V GYGVGVTPSELFGSSS +RD 
Sbjct: 62  EKMSKLKSYASQVIDGTLDMNEDETFVRVFGPEKHGHVHGYGVGVTPSELFGSSSTIRDH 121

Query: 67  ERRLNESEQRLQEFERQRK-------IEVQAFKDQIVELENHFEDRFKTMMAEMRKQ 117
           ERRLNESEQRLQEFE+QRK       +EV+  K QI ELEN FEDRF+ MMAEM K+
Sbjct: 122 ERRLNESEQRLQEFEQQRKEFEQQRELEVEVLKRQISELENRFEDRFQKMMAEMCKK 178

[Close]

BLAST of Tan0018084.3 vs. NCBI nr
Match: XP_008457059.1 (PREDICTED: uncharacterized protein LOC103496828 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-16
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 14  NYMPQMVDGTLDMNEDKIFVQVFGPEKYGRVRGYGVGVTPSELFGSSSNVRDLERRLNES 73
           +Y  Q++DGTLDMN+D IFVQ+FGPEK+  VRGYGVGV  SELFGSSS V DLERRLNES
Sbjct: 124 SYASQVIDGTLDMNDDDIFVQIFGPEKHRHVRGYGVGVIHSELFGSSSKVHDLERRLNES 183

Query: 74  EQ 76
           ++
Sbjct: 184 KK 185

[Close]

BLAST of Tan0018084.3 vs. NCBI nr
Match: KAA0056079.1 (bromodomain-containing factor 1-like isoform X2 [Cucumis melo var. makuwa] >TYK01531.1 bromodomain-containing factor 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-15
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 14 NYMPQMVDGTLDMNEDKIFVQVFGPEKYGRVRGYGVGVTPSELFGSSSNVRDLERRLNES 73
          +Y  Q++DGTLDMN+D IFVQ+ GPEK+  VRGYGVGV  SELFGSSS V DLERRLNES
Sbjct: 26 SYASQVIDGTLDMNDDDIFVQICGPEKHRHVRGYGVGVIHSELFGSSSKVHDLERRLNES 85

Query: 74 EQ 76
          ++
Sbjct: 86 KK 87

[Close]

BLAST of Tan0018084.3 vs. NCBI nr
Match: KAA0049895.1 (uncharacterized protein E6C27_scaffold13G00470 [Cucumis melo var. makuwa] >TYK07633.1 uncharacterized protein E5676_scaffold105G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.5e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 18  QMVDGTLDMNEDKIFVQVFGPEKYGRVRGYGVGVTPSELFGSSSNVRDLERRLNESEQRL 77
           Q+++G LDMNED IFVQVFGPEK+G VRGYGVGVTP ELF SSS V DLE  LNE E RL
Sbjct: 52  QVINGILDMNEDDIFVQVFGPEKHGCVRGYGVGVTPYELFRSSSKVHDLEHGLNEFELRL 111

Query: 78  QEFE 82
            E E
Sbjct: 112 HESE 115

[Close]

BLAST of Tan0018084.3 vs. NCBI nr
Match: KAF3950757.1 (hypothetical protein CMV_023525 [Castanea mollissima])

HSP 1 Score: 88.6 bits (218), Expect = 3.9e-14
Identity = 54/116 (46.55%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 14  NYMPQMVDGTLDMNEDKIFVQVFGPEKYGRVRGYGVGVTPSELFGSSSN-VRDLERRLNE 73
           N   Q+ +G L +++D++FV+VFGPE++GRVRGYG GVTP+ L+GSSS+ + DLE+RL E
Sbjct: 141 NLTTQVNEGALQISQDQMFVEVFGPERHGRVRGYGAGVTPTMLWGSSSSRMYDLEKRLQE 200

Query: 74  SEQRLQEFERQR-------KIEVQAFKD-------QIVELENHFEDRFKTMMAEMR 115
           SEQ+  E E +R       K EV+  K        Q+VE   HFE++  + MAE R
Sbjct: 201 SEQKRLESEHKRIEADAELKGEVKHLKSMLEQQAIQMVEQRRHFEEQQASQMAEQR 256

[Close]

BLAST of Tan0018084.3 vs. ExPASy TrEMBL
Match: A0A1S3C480 (uncharacterized protein LOC103496828 OS=Cucumis melo OX=3656 GN=LOC103496828 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 14  NYMPQMVDGTLDMNEDKIFVQVFGPEKYGRVRGYGVGVTPSELFGSSSNVRDLERRLNES 73
           +Y  Q++DGTLDMN+D IFVQ+FGPEK+  VRGYGVGV  SELFGSSS V DLERRLNES
Sbjct: 124 SYASQVIDGTLDMNDDDIFVQIFGPEKHRHVRGYGVGVIHSELFGSSSKVHDLERRLNES 183

Query: 74  EQ 76
           ++
Sbjct: 184 KK 185

[Close]

BLAST of Tan0018084.3 vs. ExPASy TrEMBL
Match: A0A5D3BP34 (Bromodomain-containing factor 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00930 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 14 NYMPQMVDGTLDMNEDKIFVQVFGPEKYGRVRGYGVGVTPSELFGSSSNVRDLERRLNES 73
          +Y  Q++DGTLDMN+D IFVQ+ GPEK+  VRGYGVGV  SELFGSSS V DLERRLNES
Sbjct: 26 SYASQVIDGTLDMNDDDIFVQICGPEKHRHVRGYGVGVIHSELFGSSSKVHDLERRLNES 85

Query: 74 EQ 76
          ++
Sbjct: 86 KK 87

[Close]

BLAST of Tan0018084.3 vs. ExPASy TrEMBL
Match: A0A5A7U8E9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00340 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 18  QMVDGTLDMNEDKIFVQVFGPEKYGRVRGYGVGVTPSELFGSSSNVRDLERRLNESEQRL 77
           Q+++G LDMNED IFVQVFGPEK+G VRGYGVGVTP ELF SSS V DLE  LNE E RL
Sbjct: 52  QVINGILDMNEDDIFVQVFGPEKHGCVRGYGVGVTPYELFRSSSKVHDLEHGLNEFELRL 111

Query: 78  QEFE 82
            E E
Sbjct: 112 HESE 115

[Close]

BLAST of Tan0018084.3 vs. ExPASy TrEMBL
Match: A0A2N9HCP8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40018 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.2e-14
Identity = 44/93 (47.31%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 18   QMVDGTLDMNEDKIFVQVFGPEKYGRVRGYGVGVTPSELFGSSSN-VRDLERRLNESEQR 77
            Q+ +G+L M+ED++FV+VFGPE++GRVRGYG GVT ++L+GSSS+ + DLE+RL ESEQ 
Sbjct: 988  QVNEGSLQMSEDQMFVEVFGPERHGRVRGYGAGVTATKLWGSSSSKINDLEKRLQESEQM 1047

Query: 78   LQEFERQRKIEVQAFKDQIVELENHFEDRFKTM 110
              E   +   +V+  ++Q+++L++  E+R   M
Sbjct: 1048 RLEANAKANAKVELLEEQVIQLKDLLEERSTQM 1080

[Close]

BLAST of Tan0018084.3 vs. ExPASy TrEMBL
Match: A0A2N9GUC6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30960 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.2e-14
Identity = 44/93 (47.31%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 18  QMVDGTLDMNEDKIFVQVFGPEKYGRVRGYGVGVTPSELFGSSSN-VRDLERRLNESEQR 77
           Q+ +G+L M+ED++FV+VFGPE++GRVRGYG GVT ++L+GSSS+ + DLE+RL ESEQ 
Sbjct: 9   QVNEGSLQMSEDQMFVEVFGPERHGRVRGYGAGVTATKLWGSSSSKINDLEKRLQESEQM 68

Query: 78  LQEFERQRKIEVQAFKDQIVELENHFEDRFKTM 110
             E   +   +V+  ++Q+++L++  E+R   M
Sbjct: 69  RLEANAKANAKVELLEEQVIQLKDLLEERSTQM 101

The following BLAST results are available for this feature:

BLAST of Tan0018084.3 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018084.3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904040.1	7.1e-32	66.67	uncharacterized protein LOC120090445 [Benincasa hispida]	[more]
XP_008457059.1	2.4e-16	72.58	PREDICTED: uncharacterized protein LOC103496828 [Cucumis melo]	[more]
KAA0056079.1	2.1e-15	70.97	bromodomain-containing factor 1-like isoform X2 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0049895.1	3.5e-15	73.44	uncharacterized protein E6C27_scaffold13G00470 [Cucumis melo var. makuwa] >TYK07...	[more]
KAF3950757.1	3.9e-14	46.55	hypothetical protein CMV_023525 [Castanea mollissima]	[more]

BLAST of Tan0018084.3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C480	1.2e-16	72.58	uncharacterized protein LOC103496828 OS=Cucumis melo OX=3656 GN=LOC103496828 PE=...	[more]
A0A5D3BP34	1.0e-15	70.97	Bromodomain-containing factor 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7U8E9	1.7e-15	73.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2N9HCP8	3.2e-14	47.31	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40018 PE=4 SV=1	[more]
A0A2N9GUC6	3.2e-14	47.31	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30960 PE=4 SV=1	[more]

BLAST of Tan0018084.3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0018084	Tan0018084	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018084.3-five_prime_utr	Tan0018084.3-five_prime_utr-LG07:69376111..69376190	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018084.3-exon	Tan0018084.3-exon-LG07:69376111..69376219	exon
Tan0018084.3-exon	Tan0018084.3-exon-LG07:69377546..69378007	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018084.3-cds	Tan0018084.3-cds-LG07:69376191..69376219	CDS
Tan0018084.3-cds	Tan0018084.3-cds-LG07:69377546..69377867	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0018084.3-three_prime_utr	Tan0018084.3-three_prime_utr-LG07:69377868..69378007	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0018084.3	Tan0018084.3-protein	polypeptide