Tan0017930.2 (mRNA) Snake gourd v1

Overview


Name	Tan0017930.2
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ubiquitin domain-containing protein
Location	LG01: 8645829 .. 8649926 (+)
Sequence length	792
RNA-Seq Expression	Tan0017930.2
Synteny	Tan0017930.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTAATTACTTATTTGCTTAAATTCAATATTCGTCTGAGCTTCTTCTTCTTCTTCCTCTACAAAAAGCTTCTTCTTCAGCTCTGCAAAATTCTTCCGTTTCAACTTTCGACGGAATTTCTGCTTTTCTCTGGCTTAATCTTTCTCTCTATCTACAGAAATTGAGGCTTGCGTTCAAGCAAAGCGCAATGGGCTGTGCTGGATCGTCGCAGACCAACGGAGACGGTGAGGTTCACTTCGCTTCTGTGATTCTCTTTTCGATTATTGGACAAATTTTGTTCTATGTTCGGCTGATGGCTTTGTTATGAGGAATATTAGATGGTAATCAATGCGAGTTTACTTGCTGTGCTGGGGAGAGCGGGAGTGTTGGTTTGGTAGTATTGAATTTGTTGGAAATGAATTGGATTGCTCTTGATTTTCTTTGTTCGTTGCGGCTGTTTTATTGATTTTCTTTCTGCCGTTATGGCGTTGCTTGATGGTGTGCGTTTGCTTGTTTGTTTGTTTTGTGACTGTGACAGTGGTTTGAGGCCTCGAGATTCTTAAACTTCACTTGCGATTACGTGGTGGTGCATTAATTAGGATAAGAAGTTTTCAGTTTAGATAATTGAGTTAGTCTATGGAAATAATTTTATCCTTCATTTATTTTGAGAATGATGGGTTTTTTAAGGTTCATTAGAATTACTGCTTGCAGATTCATGGACATTTGCCGCTGATGATTCAAATTCCACTGCTAATTGATTCTTTCAGTTTCAGATCAATGAAGTTATCTGGAATTGCATTCAGGGTCTTTGCATATTTGTTTCTAAAATCTAGTTTCATATTCAAAGAATTTGAGTAGATTAATTGTGCAGCTGTAATATTAGCACTTTAGGACTAAAATTCCAGCAACTAACATATAAATGGACAATATCTTATATTTCTACTTTATACTGCAATTAAAACGAAAATATGTTGAAGCTCCGTTACAACATGCTAGTTTGTGGAACGTGAATTGTCTTTTGACTCTTTTCTATTTTCATAACAAGTACAGATGAGTAACAGGAATCGTTGACCTTCTTGTATAATAGGAAGAAAATACTGCTGAAGATACTGAAATGGAAAGGAAGCGCTTCAAAAAAATGTAAAGAAAAGGAAAGAGAAAATAGCAAAATTTTAAGACGAAGTTTTCTAATTCTCCTTGTGTTGTTTAAAATACTGAAGGTTTAGGAATTTTTTTTGAAATTTTCAAGGCTACCCTTTGTTATGAATGCTGCTACGCTTGAACCTAATTTAGTTGGTTTATACTCGATTCACATATGACTGAAATTGCTTCTTTATGTAGGATCCATAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCATGCAACTACGGGATGAGTTTTGGGATACTGCACCTCACTATGGTGGTCGAAAAGGTAGTCCTATCTCTAACATATTTTTGCTAGTGTTACTTCATGGTTTTTTAGAGGTTAGCTGATCAATAAAATTACTGAGAGTTTAACTATTTAGGAATTGACCAGTACTATATCATATTGTGGAGTATCTCATGATTTCTGGTTTCAGAATCTATTTTTCTTTCTCGAGGAAAATGTAAAAGTAGGGTTAGATGACCATCCCATCCATGGAAAAGAGCGAATACTGTAGTTGCAGGGGACCCAATGAAGGTTGGGACGAATTATCTCTTGGATATGACCATGATGTCATTCACATCAATAAGAACAATTATTGGACCTATTTTCAACTTCTAGGATCCTATCATTCGTCTTCCCTATTTCCTAATAAACTAAGTTCTTCGGTTTGGAGAGATAAGGTTTTCTATTTTTATGCTGATTCCAGATTGCTGTTACCAACATCCAAGAATTTCATTTGACGTGTAGGCCTTTCCAATTGTTTCATTTTGCTTAGTGCCCAACTCAAACGGGGATGCTTTCTGGGAAGAAATGTGATGTAGAGAGTTCGTTAAAGTGGTCTAATTGATTTAGTTTTTTGATTACGTAGTTAGCTATTAATTATTCTATGAATATTGACTTTTAGTTCTTGTGTGGTTACATCTTTAGAATCAGTTTCAATTGTGAGTAAAGATCTCTTTTGAGGACTCTTTGTGAGAACTTAGGCTACACCAAAATGATTAACTTCTTTTTTCTTATGCTTAGAGCACTCATGATGTGTTTTTACCCACGATTATGGAACTTGATTAACTAGAAGGCTCATGTCTGGACTTCACTTTTGTTGGGTTGGCTTCTTGTAATTTTATTTACTTTCTTCATGTTTCTTTTCCCTTTTCTTGTGCTTTTTAGTGGTCTTTAGTGTTTTTGTAAAAGCTTAATGAAAGTCCATTTATCGCCACAAATTTTTGAAATGGCTTGCCTCATTCAAAATTCTCTTCACTCATAATGCATTTTGCAATCTGTTATTGATCTGAGGTGAGGGACATTAGTTTTTATTTTTCTCCAACTTTCAGCTTTCACTTCCCCCCGAATGGGTTTGATCCCGTTGCATACTAGATTGAAAGCAATGCTCTTTGGAATTTAAGTCAAACGGTTTGGTCCTAACTTTCCCTTAGACGATGTTCTTGCCGCGCTTTTGTTTGATGCAAACCTTAACCTTGTGTCTATACGAAGGTTTCTAATACACATCAAGACACAATTTTCTGTTAGTTTTCACTTGATTTTAGTTGACAATTGAAACGTTAGATCTCAGGTATATGGTTGTTGGAAATGGCCAAATAAAGTGTCAGTTCCAAAATTCTTCAATCTTCCACCTAACATATCTCCGCAAGATATAGAGTGAGGATCTCTTTGGAATTCCAAACGAATATTGAAACGATGTAGGATTTTGTACCAAAAATCACGAGCAAAAGATGATTGGCTAATTCATGGGCCTTGAATAAAGAGAACGCTATGTAATGAGAGGGCACCAGTATTTAGTTTTTCTAAAAATTCTGAAAAAGGAACAGAAGGCTGGCTTCTAACCGAGAAAAATAGAGAGGATCAAAGAAAGGTAGTGAAAGAGACCATTTTAGATACAAAAAGGTAGAATTTACTAGAAATGGAGCCACTACACCACACTCTGCAGTCAACAAGGGGAATGAGTGACGTGTATAAGATTTATAAGAGAAGAAAGTTTAGTTAGCTCAACATCGTTTTGATTCCTTCTGAAAGACAAATCGTGAGAAACATGAGTAATAAAGACTCAGCCAAACAGTCATGATTTGAAAATTGTGTTTTAGACGGTGAAAGGTTCTGAGATGAGTTAGAAGTGAGTAAAATTTCTCAAAATAGGATTCTGATACTATCTCCTAATAGTTTTCTAAGATGAATACTAGAATTTTGCTCACTTCCAACTCGTCTCAAAATATTTCAATGTCTCTCTTATAAGAAAGGAAGATCAAATCTCCTGTATGTCCTTTTCTTATCTTTGGGCTACCACACACCCTTCAAGTCTTTAACATTGACCTCACTTTTCTTATACATTCCCTTTTCCTTTATGGCCTGCTTAGTAAAATTTACTAACAATTTTTGTTGATACCAGAGATTTGGGATGCACTACAAGCAGCTGCTGAAGCCGAGCTATCGCTTGCGCAAGCAATTGTAGACAGTGCTGGAGTCATCGTTCAAAATGCAGATTTAACAATCTGTTACGATGAGAGAGGTCGGTCCACACCATTTCTTCATTTAAGAAATTATGATATGTTATTTTAGTTTAATCATCAATATCATTTTATCATCGCCCAATCTTATTGCAGGCGCAAAATATGAACTGCCCAACTATGTTTTGAGTGAACCAACCAATTTGATTCGTGACAGTTCATAAAGAGGTGGGTGGAAATTCAAACTTCTAACCTTTTAGTTGAGATTATAATACCTTAACTAGTTGAGTTATACTCACGTTGCCTGACTATTTATGTTCTAGTTGAAATGTAATAATTATATGTATTGTATATAAATTATATAGCTTTAAATCTTATTTTGATCCTAGAAGATATTTCATTTTTGTTCCACCTTCACGTTTGCACAAAAATTATTTTAGTCATTAACATTGATTATTTAATACAAATACATCATTTCCTCA

mRNA sequence

ACTAATTACTTATTTGCTTAAATTCAATATTCGTCTGAGCTTCTTCTTCTTCTTCCTCTACAAAAAGCTTCTTCTTCAGCTCTGCAAAATTCTTCCGTTTCAACTTTCGACGGAATTTCTGCTTTTCTCTGGCTTAATCTTTCTCTCTATCTACAGAAATTGAGGCTTGCGTTCAAGCAAAGCGCAATGGGCTGTGCTGGATCGTCGCAGACCAACGGAGACGGATCCATAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCATGCAACTACGGGATGAGTTTTGGGATACTGCACCTCACTATGGTGGTCGAAAAGAGATTTGGGATGCACTACAAGCAGCTGCTGAAGCCGAGCTATCGCTTGCGCAAGCAATTGTAGACAGTGCTGGAGTCATCGTTCAAAATGCAGATTTAACAATCTGTTACGATGAGAGAGGCGCAAAATATGAACTGCCCAACTATGTTTTGAGTGAACCAACCAATTTGATTCGTGACAGTTCATAAAGAGGTGGGTGGAAATTCAAACTTCTAACCTTTTAGTTGAGATTATAATACCTTAACTAGTTGAGTTATACTCACGTTGCCTGACTATTTATGTTCTAGTTGAAATGTAATAATTATATGTATTGTATATAAATTATATAGCTTTAAATCTTATTTTGATCCTAGAAGATATTTCATTTTTGTTCCACCTTCACGTTTGCACAAAAATTATTTTAGTCATTAACATTGATTATTTAATACAAATACATCATTTCCTCA

Coding sequence (CDS)

ATGGGCTGTGCTGGATCGTCGCAGACCAACGGAGACGGATCCATAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCATGCAACTACGGGATGAGTTTTGGGATACTGCACCTCACTATGGTGGTCGAAAAGAGATTTGGGATGCACTACAAGCAGCTGCTGAAGCCGAGCTATCGCTTGCGCAAGCAATTGTAGACAGTGCTGGAGTCATCGTTCAAAATGCAGATTTAACAATCTGTTACGATGAGAGAGGCGCAAAATATGAACTGCCCAACTATGTTTTGAGTGAACCAACCAATTTGATTCGTGACAGTTCATAA

Protein sequence

MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQAAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS

Homology

[Close]

BLAST of Tan0017930.2 vs. ExPASy Swiss-Prot
Match: Q4V8W7 (Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-23
Identity = 59/119 (49.58%), Postives = 74/119 (62.18%), Query Frame = 0


Query: 2   GCAGSSQTNGDGSIKKIRKPKP-WKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 61
           G    +Q    G  + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIWDAL+
Sbjct: 14  GRGSRTQRKRGGRNEPLKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAFEGRKEIWDALK 73

Query: 62  AAAEA----ELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAA A    +  LAQAIVD A + + +  LT CYDE G +Y+LP Y L+ P NLI + S
Sbjct: 74  AAAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYCLAPPVNLISERS 132

[Close]

BLAST of Tan0017930.2 vs. ExPASy Swiss-Prot
Match: Q6DG43 (Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-23
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 4   AGSSQTNGDGS------IKKIRKPKP-WKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIW 63
           +GS   N DG+       + +++ KP WK   P+T  QL   RDEFWDTAP + GRKEIW
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKREKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71

Query: 64  DALQAAAEA----ELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIR 116
           DAL+AAA+A    +  LAQAI+D A + + +  LT CYDE G +Y+LP Y LS P N+I 
Sbjct: 72  DALKAAAQAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMIE 131

[Close]

BLAST of Tan0017930.2 vs. ExPASy Swiss-Prot
Match: Q640W6 (Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-23
Identity = 59/123 (47.97%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 4   AGSSQTNGDGS------IKKIRKPKP-WKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIW 63
           +GS   N DG+       + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIW
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKKDKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71

Query: 64  DALQAAAEA----ELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIR 116
           DAL+AAA A    +  LAQAI+D A + + +  LT CYDE G +Y+LP Y L+ P N+I 
Sbjct: 72  DALKAAAHAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131

[Close]

BLAST of Tan0017930.2 vs. ExPASy Swiss-Prot
Match: Q6PGH0 (Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-23
Identity = 59/123 (47.97%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 4   AGSSQTNGDGS------IKKIRKPKP-WKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIW 63
           +GS   N DG+       + ++K KP WK   P+T  QL   RDEFWDTAP + GRKEIW
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIW 71

Query: 64  DALQAAAEA----ELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIR 116
           DAL+AAA A    +  LAQAI+D A + + +  LT CYDE G +Y+LP Y L+ P N+I 
Sbjct: 72  DALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIE 131

[Close]

BLAST of Tan0017930.2 vs. ExPASy Swiss-Prot
Match: Q6GL38 (Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-23
Identity = 58/117 (49.57%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 4   AGSSQTNGDGSIKKIRKPKP-WKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQAA 63
           A   Q    G  + ++K +P WK   P+T  QL   RDEFWDTAP + GRKEIWDAL+AA
Sbjct: 19  ASGQQRKRAGRNEPLKKERPRWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAA 78

Query: 64  AEA----ELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           A A    +  LAQAIVD A + + +  LT CYDE G +Y+LP Y L+ P NLI + S
Sbjct: 79  AFAVEANDHELAQAIVDGASITLPHGSLTECYDELGTRYQLPVYCLAPPVNLIMERS 135

[Close]

BLAST of Tan0017930.2 vs. NCBI nr
Match: XP_038882682.1 (ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882691.1 ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882701.1 ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882708.1 ubiquitin domain-containing protein 2-like [Benincasa hispida])

HSP 1 Score: 233.8 bits (595), Expect = 7.4e-58
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGCAGSSQTNGDGSIKKIRKPK WKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDAL+
Sbjct: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAELSLAQAI+DSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]

BLAST of Tan0017930.2 vs. NCBI nr
Match: XP_022931411.1 (ubiquitin domain-containing protein 2-like [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 8.2e-57
Identity = 109/115 (94.78%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGCAGSSQTNGDGSIKKIRKPK WKHPQPITRSQL+QLR+EFWDTAPHYGGRKEIWDAL+
Sbjct: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAELSLAQAI+DSAGVI+QNADLTICYDERGAKYELPNYVLSEPTNLIRDSS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]

BLAST of Tan0017930.2 vs. NCBI nr
Match: XP_022142761.1 (ubiquitin domain-containing protein 1-like [Momordica charantia] >XP_022142762.1 ubiquitin domain-containing protein 1-like [Momordica charantia])

HSP 1 Score: 228.0 bits (580), Expect = 4.1e-56
Identity = 107/115 (93.04%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGCAGSS+TNGDGS K+IRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGR EIWDAL+
Sbjct: 1   MGCAGSSRTNGDGSTKRIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRNEIWDALR 60

Query: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAE SLAQAI+DSAGVIVQNADLT+CYDERGAKYELPNYVLSEPTNLIRDSS
Sbjct: 61  AAAEAEXSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]

BLAST of Tan0017930.2 vs. NCBI nr
Match: XP_023552879.1 (ubiquitin domain-containing protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 227.6 bits (579), Expect = 5.3e-56
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGCAGSSQTNGDGSIKKI KPK WKHPQPITRSQL+QLR+EFWDTAPHYGGRKEIWDAL+
Sbjct: 1   MGCAGSSQTNGDGSIKKIGKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAELSLAQAI+DSAGVI+QNADLTICYDERGAKYELPNYVLSEPTNLIRDSS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]

BLAST of Tan0017930.2 vs. NCBI nr
Match: XP_004137230.1 (ubiquitin domain-containing protein 1 [Cucumis sativus] >KGN53573.1 hypothetical protein Csa_014886 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 7.0e-56
Identity = 110/115 (95.65%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGCAGSSQT  DGSIKKIRKPK WKHPQPITRSQL QLRDEFWDTAPHYGGRKEIWDAL+
Sbjct: 1   MGCAGSSQTKADGSIKKIRKPKSWKHPQPITRSQLTQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS
Sbjct: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]

BLAST of Tan0017930.2 vs. ExPASy TrEMBL
Match: A0A6J1ETK8 (ubiquitin domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111437602 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57
Identity = 109/115 (94.78%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGCAGSSQTNGDGSIKKIRKPK WKHPQPITRSQL+QLR+EFWDTAPHYGGRKEIWDAL+
Sbjct: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAELSLAQAI+DSAGVI+QNADLTICYDERGAKYELPNYVLSEPTNLIRDSS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]

BLAST of Tan0017930.2 vs. ExPASy TrEMBL
Match: A0A6J1CN58 (ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012801 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.0e-56
Identity = 107/115 (93.04%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGCAGSS+TNGDGS K+IRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGR EIWDAL+
Sbjct: 1   MGCAGSSRTNGDGSTKRIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRNEIWDALR 60

Query: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAE SLAQAI+DSAGVIVQNADLT+CYDERGAKYELPNYVLSEPTNLIRDSS
Sbjct: 61  AAAEAEXSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]

BLAST of Tan0017930.2 vs. ExPASy TrEMBL
Match: A0A0A0KVJ9 (UBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G083480 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.4e-56
Identity = 110/115 (95.65%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGCAGSSQT  DGSIKKIRKPK WKHPQPITRSQL QLRDEFWDTAPHYGGRKEIWDAL+
Sbjct: 1   MGCAGSSQTKADGSIKKIRKPKSWKHPQPITRSQLTQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS
Sbjct: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]

BLAST of Tan0017930.2 vs. ExPASy TrEMBL
Match: A0A6J1J725 (ubiquitin domain-containing protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481944 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.7e-56
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGC GSSQTNGDGS KKIRKPKPWKHPQPITRSQL QLRDEFWDTAPHYGGR EIWDAL+
Sbjct: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNEIWDALR 60

Query: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAELSLAQAI+DSAGVIVQNADLT+CYDERGAKYELP YVLSEPTNLIRDSS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPKYVLSEPTNLIRDSS 115

[Close]

BLAST of Tan0017930.2 vs. ExPASy TrEMBL
Match: A0A6J1FQA3 (ubiquitin domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447800 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.7e-56
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGC GSSQTNGDGS KKIRKPKPWKHPQPITRSQL QLRDEFWDTAPHYGGR EIWDAL+
Sbjct: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNEIWDALR 60

Query: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAELSLAQAI+DSAGVIVQNADLT+CYDERGAKYELP YVLSEPTNLIRDSS
Sbjct: 61  AAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPKYVLSEPTNLIRDSS 115

[Close]

BLAST of Tan0017930.2 vs. TAIR 10
Match: AT1G53400.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 204.5 bits (519), Expect = 4.5e-53
Identity = 93/110 (84.55%), Postives = 105/110 (95.45%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGCAGS+Q+  DGS+KKIRKPKPWKH QPIT+++LM+LR+EFWDTAPHYGGRKEIWDAL+
Sbjct: 1   MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNL 111
           AAAEA++SLAQAIVDSAGVIVQN DLT+CYDERGAKYELP YVLSEPTNL
Sbjct: 61  AAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNL 110

[Close]

BLAST of Tan0017930.2 vs. TAIR 10
Match: AT5G45740.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-45
Identity = 83/115 (72.17%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSI--KKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDA 60
           MGC GSSQ   +G    KKI KPKPW H +PITR+QL  +R+EFWDT+PHYGG++EIW+A
Sbjct: 1   MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQREIWEA 60

Query: 61  LQAAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRD 114
           L+AAAEA+L LAQ IVDSAGVIVQN DLT+C+DERGA+YELP YVLSEPTNLIR+
Sbjct: 61  LRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVLSEPTNLIRE 115

[Close]

BLAST of Tan0017930.2 vs. TAIR 10
Match: AT1G16960.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 170.2 bits (430), Expect = 9.4e-43
Identity = 80/112 (71.43%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MGCAGSSQTNGDGSIKKIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRKEIWDALQ 60
           MGC+ SS+T  +G  +KIR+PK WKHPQPI+R +L Q+R+EFWDTAPHYGG+KEIWDAL+
Sbjct: 1   MGCS-SSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGKKEIWDALR 60

Query: 61  AAAEA-ELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLI 112
           AAAE  +LSLAQ I++SAGVIVQN DLTICYDE+G+KYELP YVL +P+NLI
Sbjct: 61  AAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111

The following BLAST results are available for this feature:

BLAST of Tan0017930.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4V8W7	1.2e-23	49.58	Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1	[more]
Q6DG43	1.2e-23	47.97	Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1	[more]
Q640W6	2.8e-23	47.97	Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV...	[more]
Q6PGH0	2.8e-23	47.97	Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=...	[more]
Q6GL38	3.6e-23	49.57	Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubtd1 PE=...	[more]

BLAST of Tan0017930.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882682.1	7.4e-58	97.39	ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882691.1 u...	[more]
XP_022931411.1	8.2e-57	94.78	ubiquitin domain-containing protein 2-like [Cucurbita moschata]	[more]
XP_022142761.1	4.1e-56	93.04	ubiquitin domain-containing protein 1-like [Momordica charantia] >XP_022142762.1...	[more]
XP_023552879.1	5.3e-56	93.91	ubiquitin domain-containing protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_004137230.1	7.0e-56	95.65	ubiquitin domain-containing protein 1 [Cucumis sativus] >KGN53573.1 hypothetical...	[more]

BLAST of Tan0017930.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETK8	4.0e-57	94.78	ubiquitin domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1CN58	2.0e-56	93.04	ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A0A0KVJ9	3.4e-56	95.65	UBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G083480 PE=4 SV...	[more]
A0A6J1J725	5.7e-56	93.04	ubiquitin domain-containing protein 1-like isoform X2 OS=Cucurbita maxima OX=366...	[more]
A0A6J1FQA3	5.7e-56	93.04	ubiquitin domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Tan0017930.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53400.1	4.5e-53	84.55	Ubiquitin domain-containing protein	[more]
AT5G45740.1	1.2e-45	72.17	Ubiquitin domain-containing protein	[more]
AT1G16960.1	9.4e-43	71.43	Ubiquitin domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038169	DC-UbP/UBTD2, N-terminal domain superfamily	GENE3D	1.20.225.20		coord: 31..104 e-value: 6.1E-27 score: 95.7
IPR032752	DC-UbP/UBTD2, N-terminal domain	PFAM	PF16455	UBD	coord: 16..113 e-value: 3.9E-35 score: 120.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR13609:SF25	BINDING PROTEIN, PUTATIVE-RELATED	coord: 1..112
IPR039869	Ubiquitin domain-containing protein 1/2	PANTHER	PTHR13609	UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED	coord: 1..112

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0017930	Tan0017930	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017930.2-five_prime_utr	Tan0017930.2-five_prime_utr-LG01:8645829..8646014	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017930.2-exon	Tan0017930.2-exon-LG01:8645829..8646051	exon
Tan0017930.2-exon	Tan0017930.2-exon-LG01:8647148..8647270	exon
Tan0017930.2-exon	Tan0017930.2-exon-LG01:8649387..8649506	exon
Tan0017930.2-exon	Tan0017930.2-exon-LG01:8649601..8649926	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017930.2-cds	Tan0017930.2-cds-LG01:8646015..8646051	CDS
Tan0017930.2-cds	Tan0017930.2-cds-LG01:8647148..8647270	CDS
Tan0017930.2-cds	Tan0017930.2-cds-LG01:8649387..8649506	CDS
Tan0017930.2-cds	Tan0017930.2-cds-LG01:8649601..8649668	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017930.2-three_prime_utr	Tan0017930.2-three_prime_utr-LG01:8649669..8649926	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0017930.2	Tan0017930.2-protein	polypeptide