Tan0013304.1 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GACAAACTCAGTTTTGTAGAGAAACAAACACAAACACAAACACAAATCAAATACAAATACAAATACAACAATGGAAGCTATTCAAACTTGGGTTTCTCAACACAAACTCACCAGCATTGGTTAGTGATCTTCTTCTTCTCATCTAATTCCTTTATTTTTCTTTATAACACTGATGACAAATATTTACTTTAAAGTTCCACTTTAAATTTGTGTTTAGTACTAGAAATAAGTATTTCTGGAGCTCTTAAATTAAAGGATCATATTTAAAAAATTGTTCATTAACATTTCTTTTACATCGTCTTGATGAATTTATTTATTTATTTATTTATTATTTGCTTGGCCCTAAATAAATTTTTTTCGTGTAGGAGCATTGTGGGCATCCGGGATTGGAGCATCACTGGCCTATACCCGATCAAGGACTCCCCTGAAGCCAAGTCTTCGGCTTATCCATGCCAGGTAAATACACAATAACATTCAATTCAATACACACCCGATTTCTTTTTATAATATCCTCTTTTTTTTTTTTTCCTTTAAAACTTAAATTAATATGGGTATTTTTTTTTTTGTTTTACAAGGATTCACGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGCCGACCGATCCGAAGTTCCCGCTTCCGCCCTGCCGGCGAAGTAGAATCACCGACGTACCGGGACAAGAAGAAATTGGATAAGCCGGAATATCGTATTCTAAGGGGATCAATCATTTTGTGTAAATTAAATCAAGGATATTAGATTGAACCCTTTTTATTAATGTATCTGTAGCCATAAATTAATGGCAAAGTTTTAAGCTCGGTGACTCGCCTTCTATCTTACTACTACTCATCAAGTAGCATTTATCTTTCAAAATATTTTAAATAACACTTAGTTTCGTTTCTCAAAA GACAAACTCAGTTTTGTAGAGAAACAAACACAAACACAAACACAAATCAAATACAAATACAAATACAACAATGGAAGCTATTCAAACTTGGGTTTCTCAACACAAACTCACCAGCATTGGAGCATTGTGGGCATCCGGGATTGGAGCATCACTGGCCTATACCCGATCAAGGACTCCCCTGAAGCCAAGTCTTCGGCTTATCCATGCCAGGATTCACGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGCCGACCGATCCGAAGTTCCCGCTTCCGCCCTGCCGGCGAAGTAGAATCACCGACGTACCGGGACAAGAAGAAATTGGATAAGCCGGAATATCGTATTCTAAGGGGATCAATCATTTTGTGTAAATTAAATCAAGGATATTAGATTGAACCCTTTTTATTAATGTATCTGTAGCCATAAATTAATGGCAAAGTTTTAAGCTCGGTGACTCGCCTTCTATCTTACTACTACTCATCAAGTAGCATTTATCTTTCAAAATATTTTAAATAACACTTAGTTTCGTTTCTCAAAA ATGGAAGCTATTCAAACTTGGGTTTCTCAACACAAACTCACCAGCATTGGAGCATTGTGGGCATCCGGGATTGGAGCATCACTGGCCTATACCCGATCAAGGACTCCCCTGAAGCCAAGTCTTCGGCTTATCCATGCCAGGATTCACGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGCCGACCGATCCGAAGTTCCCGCTTCCGCCCTGCCGGCGAAGTAG MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSGAAVYHYYEKKAAADRSEVPASALPAK Homology
BLAST of Tan0013304.1 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 0
BLAST of Tan0013304.1 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30 Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 0
BLAST of Tan0013304.1 vs. NCBI nr
Match: KAG7033273.1 (hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 142.1 bits (357), Expect = 2.2e-30 Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 0
BLAST of Tan0013304.1 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus]) HSP 1 Score: 139.4 bits (350), Expect = 1.4e-29 Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0
BLAST of Tan0013304.1 vs. NCBI nr
Match: XP_038886475.1 (uncharacterized protein LOC120076661 [Benincasa hispida]) HSP 1 Score: 138.3 bits (347), Expect = 3.2e-29 Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0
BLAST of Tan0013304.1 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 6.9e-30 Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0
BLAST of Tan0013304.1 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 2.6e-29 Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0
BLAST of Tan0013304.1 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 2.1e-26 Identity = 61/70 (87.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of Tan0013304.1 vs. ExPASy TrEMBL
Match: A0A540LHQ1 (HIG1 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028432 PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25 Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 0
BLAST of Tan0013304.1 vs. ExPASy TrEMBL
Match: A0A5J5AU49 (HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25 Identity = 60/71 (84.51%), Postives = 68/71 (95.77%), Query Frame = 0
BLAST of Tan0013304.1 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein ) HSP 1 Score: 84.7 bits (208), Expect = 3.9e-17 Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of Tan0013304.1 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein ) HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16 Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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