Tan0013304 (gene) Snake gourd v1

Overview


Name	Tan0013304
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	HIG1 domain-containing protein
Location	LG11: 2475680 .. 2476621 (-)
RNA-Seq Expression	Tan0013304
Synteny	Tan0013304

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAAACTCAGTTTTGTAGAGAAACAAACACAAACACAAACACAAATCAAATACAAATACAAATACAACAATGGAAGCTATTCAAACTTGGGTTTCTCAACACAAACTCACCAGCATTGGTTAGTGATCTTCTTCTTCTCATCTAATTCCTTTATTTTTCTTTATAACACTGATGACAAATATTTACTTTAAAGTTCCACTTTAAATTTGTGTTTAGTACTAGAAATAAGTATTTCTGGAGCTCTTAAATTAAAGGATCATATTTAAAAAATTGTTCATTAACATTTCTTTTACATCGTCTTGATGAATTTATTTATTTATTTATTTATTATTTGCTTGGCCCTAAATAAATTTTTTTCGTGTAGGAGCATTGTGGGCATCCGGGATTGGAGCATCACTGGCCTATACCCGATCAAGGACTCCCCTGAAGCCAAGTCTTCGGCTTATCCATGCCAGGTAAATACACAATAACATTCAATTCAATACACACCCGATTTCTTTTTATAATATCCTCTTTTTTTTTTTTTCCTTTAAAACTTAAATTAATATGGGTATTTTTTTTTTTGTTTTACAAGGATTCACGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGCCGACCGATCCGAAGTTCCCGCTTCCGCCCTGCCGGCGAAGTAGAATCACCGACGTACCGGGACAAGAAGAAATTGGATAAGCCGGAATATCGTATTCTAAGGGGATCAATCATTTTGTGTAAATTAAATCAAGGATATTAGATTGAACCCTTTTTATTAATGTATCTGTAGCCATAAATTAATGGCAAAGTTTTAAGCTCGGTGACTCGCCTTCTATCTTACTACTACTCATCAAGTAGCATTTATCTTTCAAAATATTTTAAATAACACTTAGTTTCGTTTCTCAAAA

mRNA sequence

GACAAACTCAGTTTTGTAGAGAAACAAACACAAACACAAACACAAATCAAATACAAATACAAATACAACAATGGAAGCTATTCAAACTTGGGTTTCTCAACACAAACTCACCAGCATTGGAGCATTGTGGGCATCCGGGATTGGAGCATCACTGGCCTATACCCGATCAAGGACTCCCCTGAAGCCAAGTCTTCGGCTTATCCATGCCAGGATTCACGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGCCGACCGATCCGAAGTTCCCGCTTCCGCCCTGCCGGCGAAGTAGAATCACCGACGTACCGGGACAAGAAGAAATTGGATAAGCCGGAATATCGTATTCTAAGGGGATCAATCATTTTGTGTAAATTAAATCAAGGATATTAGATTGAACCCTTTTTATTAATGTATCTGTAGCCATAAATTAATGGCAAAGTTTTAAGCTCGGTGACTCGCCTTCTATCTTACTACTACTCATCAAGTAGCATTTATCTTTCAAAATATTTTAAATAACACTTAGTTTCGTTTCTCAAAA

Coding sequence (CDS)

ATGGAAGCTATTCAAACTTGGGTTTCTCAACACAAACTCACCAGCATTGGAGCATTGTGGGCATCCGGGATTGGAGCATCACTGGCCTATACCCGATCAAGGACTCCCCTGAAGCCAAGTCTTCGGCTTATCCATGCCAGGATTCACGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGCCGACCGATCCGAAGTTCCCGCTTCCGCCCTGCCGGCGAAGTAG

Protein sequence

MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSGAAVYHYYEKKAAADRSEVPASALPAK

Homology

[Close]

BLAST of Tan0013304 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSG 60
          MEAIQ WVSQHKLTSIGALWASGIGASLAYTRS TPLKPSLRLIHAR+HAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVPASAL 84
          AAVYHYYE K+A  RSE P SA+
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSAV 83

[Close]

BLAST of Tan0013304 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSG 60
          MEAIQ WVSQHKLTSIGALWASGIGASLAYTRS TPLKPSLRLIHAR+HAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVPASAL 84
          AAVYHYYE K+A  RSE P SA+
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSAV 83

[Close]

BLAST of Tan0013304 vs. NCBI nr
Match: KAG7033273.1 (hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 2.2e-30
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSG 60
          MEAIQ W+S+HKLTSIGALWASGIGASL YT+SRTPLKPSLRLIHAR+HAQALTLAVLSG
Sbjct: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYY--EKKAAADRSEVPASALPAK 87
          AAVYHYY  EKK  ADR++V ASA+P K
Sbjct: 61 AAVYHYYEKEKKGVADRTKVSASAVPGK 88

[Close]

BLAST of Tan0013304 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-29
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSG 60
          MEAIQ WVS+HKLT+IGALWASGIGASLAYTRSRTPLKPSLRLIHAR+HAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVP 80
          AAVYHYY+ K   DRSE P
Sbjct: 61 AAVYHYYDNKIGRDRSEAP 79

[Close]

BLAST of Tan0013304 vs. NCBI nr
Match: XP_038886475.1 (uncharacterized protein LOC120076661 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 3.2e-29
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSG 60
          MEAIQ WVS+HKLT+IGALWASGIGASLAYTRSRT LKPSLRLIHAR+HAQALTLAVLSG
Sbjct: 1  MEAIQVWVSEHKLTTIGALWASGIGASLAYTRSRTLLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVPAS 82
          AAVYHYYE K A  RSE PAS
Sbjct: 61 AAVYHYYEDKLAGGRSEAPAS 81

[Close]

BLAST of Tan0013304 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.9e-30
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSG 60
          MEAIQ WVS+HKLT+IGALWASGIGASLAYTRSRTPLKPSLRLIHAR+HAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVP 80
          AAVYHYY+ K   DRSE P
Sbjct: 61 AAVYHYYDNKIGRDRSEAP 79

[Close]

BLAST of Tan0013304 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.6e-29
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSG 60
          MEAIQ WVS+HKLT+IGALWASG+GASLAYTRSRTPLKPSLRLIHAR+HAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVP 80
          AAVYHYY+ K   DRSE P
Sbjct: 61 AAVYHYYDNKFGNDRSEAP 79

[Close]

BLAST of Tan0013304 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.1e-26
Identity = 61/70 (87.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1   MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSG 60
           MEA+Q+WVS+HKLTSIG LWASGIGASLAY+R++TPLKPSLRLIHAR+HAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYEKK 71
           AAVYHYYEK+
Sbjct: 98  AAVYHYYEKR 107

[Close]

BLAST of Tan0013304 vs. ExPASy TrEMBL
Match: A0A540LHQ1 (HIG1 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028432 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSG 60
          MEAIQ+WVS+HKLTSIG +WAS +GASLAY+++RTPLKPSLRLIHAR+HAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLTSIGGIWASAVGASLAYSKTRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADR 76
          AAVYHYYE+  AA R
Sbjct: 61 AAVYHYYEEHEAAAR 75

[Close]

BLAST of Tan0013304 vs. ExPASy TrEMBL
Match: A0A5J5AU49 (HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 60/71 (84.51%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSG 60
          MEA+Q+WVS+HKLTSIG LWAS IGASLAY+R++TPLKPSLRLIHAR+HAQALTLAVLSG
Sbjct: 1  MEALQSWVSEHKLTSIGTLWASAIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKA 72
          AA YHYYEK+A
Sbjct: 61 AAAYHYYEKRA 71

[Close]

BLAST of Tan0013304 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 84.7 bits (208), Expect = 3.9e-17
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 2  EAIQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSGA 61
          E I+ WVS HKL ++G LW SGI  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYEKKAAA 74
          AV  YY+ K  A
Sbjct: 69 AVVEYYDHKTEA 80

[Close]

BLAST of Tan0013304 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 4  IQTWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARIHAQALTLAVLSGAAV 63
          I+ W+ +HKL ++G LW SGI  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYEKKAAA 74
            YY+ K+ A
Sbjct: 71 VEYYDHKSGA 80

The following BLAST results are available for this feature:

BLAST of Tan0013304 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013304 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578469.1	1.3e-30	87.95	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016034.1	1.3e-30	87.95	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7033273.1	2.2e-30	82.95	hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004138401.1	1.4e-29	87.34	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
XP_038886475.1	3.2e-29	87.65	uncharacterized protein LOC120076661 [Benincasa hispida]	[more]

BLAST of Tan0013304 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4	6.9e-30	87.34	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A5A7UEZ1	2.6e-29	86.08	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A7J7I509	2.1e-26	87.14	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A540LHQ1	1.0e-25	81.33	HIG1 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028432 PE=4 S...	[more]
A0A5J5AU49	1.3e-25	84.51	HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 ...	[more]

BLAST of Tan0013304 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	3.9e-17	56.94	Hypoxia-responsive family protein	[more]
AT5G27760.1	1.5e-16	54.29	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..71 e-value: 6.5E-7 score: 31.0
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..75
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 11..59 e-value: 3.7E-9 score: 36.7
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 19.273376
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0013304.1	Tan0013304.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome