Tan0010558.1 (mRNA) Snake gourd v1

Overview


Name	Tan0010558.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Dynein light chain
Location	LG10: 9075613 .. 9078365 (+)
Sequence length	1121
RNA-Seq Expression	Tan0010558.1
Synteny	Tan0010558.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAAAAAACTTAAAATGACTGGGCCTCGGGAATCTTACAGAAGAGACGCAGAGGGATAGTGGTTGAGAGTGAGAGCCTTTCTTCTCCCTCTTCTTCTTCTTCCTCTCTCTCTCTCTCTGTTCATCTCTTACCAGCTACCACCAAACCAAATATATTCCCAAAACCTTCACAACAACATGAACCACGATCCCAAGCGAAGCAATCCTGGACCTTTAATGGTCAAGCCCGAATCTGACGATCGCAAACCCTCTTCTGCCGCCGCCGTCGGCAAGAAAATCGTTATCAAGAGCGCCGATATGTTCGGAGACATGCAGAAGGAGGCTGTTGACATTGCCATAGCCGTTAGTCCTTCTTTCTCTCGAAATAGCTACTCTCCATCTCTTATTCAAATCCATTCCGCAAGTAATTGCTTCCGATTCTGTTTCGTTTTCTTCTTCTTGTTTAGGCATTTGAGAAGCATTCCGTCGAGAAGGATGTTGCCGAGCTCATAAAGAAGGAGTTCGATAAGCGGCATGGCCCGACCTGGCATTGCATCGTCGGTCGTAATTTTGGTAGCGTATCTCACTCTCTTTGTGGAATCTCTAGCTTCCTGCTTAATTTTCACTTTCTTTCACTCTGATGAATTGAATCGCTATAAATTTCTGTTACTTTAGTCTCTTAACGAAAGTTCCGTTACTCCAGTTCATTCTCTAGCTTTTTTTCCCCTACTGAAATGGAGATCTAGCTTTTAATTTTTTTTTTCCGGCGAATAATTTGAAGGAGAGGCATGGTTTTTTCGGGATTCTGACACCATTAGCTTAACTCTTGTTTCAGGCTCCACCACTTAGCAGGAGCAAGATTTGTCTGCATAGGCAGTATTAGCCCAGTAGTGTTAAGTACATTGAAATTGCATATATTCTTGCATCACTAGGTAAGTGGCTCTATTGGAGAAACTCTATATTGAATTTGCTAGCTAATTCACAGCTACAGCAATCGTGTCAACTGAAATCAATATCACTGGATGGTCTGGCTATGGTGGCAACCAGGGGGTGGGGGCTCCCCCACGAAGTTTGATGATGAGGCCAACTAACTTAGTGAGATAGAATTGTTTGGAACTATGCTAGTTGAATATAGGGACAAAAACCAATGGGTGGTTTTGAATAGTTTTTTTTTTTTTTTTTTGGGGATCAAATCTTCCTATTCTTCATTTTTTTTTAAAAAATAAGAATATTAGGCTGTATCATGTAAGCAGAATTTGAGTTGGTTTTGCTAGTCGTAATTCAATCGAAGCATTAATGCTTTTAGTTTTATGTTGCAATATGGTCAGGCATCTAGTCATCGTGGCACTCATAAACTAGCTGACTTCACTATGATATTGTCTCTTTTGCAATTTTTGTTCTGTTTGCACGGTGAAAGGTAGGAATCAAAACATCCTGTTTCATGTTTAATTTAAGTATCAAATGTTCAGTTCTTGGTATTTATGGGATGTAAAAGATCGCCTGACTGAGTAACAGGGAGGTGATCTGCAACTTCTTTTTTTCTTTGTGCTGTTAGGGAAACGGAAAATTCTTATAGCCAAAGAATAAAAGTTTGTGATCACTCGGACAAGAGAGAGTTACTAATATAAACTTAAAGTACACTCTTTTTATCATGCCATTCTAAGATTTAGAGCTGAACGCTAAATGCTTTGAGCGCGGTTTCCGTTGTCTTATAGAGCCAAAAATTACTTTACGTTGCCAATTCTTTCATCCCAAGCCTTAAAAGAACCTGTTGGTATTAGTGTGATCCATTTAGTTTTTTCATTTTGGCTGAGCGAGCTTAATTGCTAACTATACATTCCTGGCTTGAATATTGCAAGCTCTTGGTAGCTATTATGTAGCAGATGAAAAGAACCTATAGTTCTAGTTGCTGGCTTCAGACTGCTAATTTTGGAAAATTTTGGAAAATTCCAAAAACTATGCTCCCTTATCTCCATGAATGTTGCAGTGCATTGTCTTGTTCTTGATTATTGAGCTTTATTCAGGGTCCTACTTGTGTTAGTTGTTTTTCCTGAATTAAATTAATATCTCAAATGATTCTATTTTCTGGTTTCTGTTTCAGGTTCCTATGTGACACACGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCAGTTTTACTTTTCAAATCTGGTTGATGATTGTTCTCCCCTTGACAAAGATGCCACCAACTACTTTGGCATGGTGAGTCTGCGATAACAATGCTACGACAAGTTCTTGTATGTATAATCTAGTCTGCTGCCAATATGTAAATCACTTGTTGTAGCGTTTTTTATATCATAACTTAATATATCACTGGGGAGTAGATTAAATGATGAAACGAGAAATGCAATGTGCCATTTACATAAATGTCTCAAAAGGTTTCTTTGTCAATCTCATTAAAACAGAAGGTTGCAGTACAGGACCAATCTTCAAAAAAAGGGGGAAAAAAATGCTGTACCATTGGCCCAATGGTCAATGTCTCCTGAAAATTTTGTCATTATGTCTTGATAGATGAGTTTACGGTGGTTTTTAATGGGTTTTGGTGGTTAAATTTTCAACTACTGGCTCTGAAATATGCCTTGGAAGTTGATCTATAGAAGAGTAAATGCACCATTTTAGTACAAGATGGGGTGTTGACTGGAATTTTGAAACAAGAAGAATTTATGTACTGTTACTAAATAAAGGAAGGAGTTAAGGCTCTCTTTCTTTCACTCTTTGGTACTAAAGAAATGAGATTCTGGAG

mRNA sequence

AAAAAGAAAAAACTTAAAATGACTGGGCCTCGGGAATCTTACAGAAGAGACGCAGAGGGATAGTGGTTGAGAGTGAGAGCCTTTCTTCTCCCTCTTCTTCTTCTTCCTCTCTCTCTCTCTCTGTTCATCTCTTACCAGCTACCACCAAACCAAATATATTCCCAAAACCTTCACAACAACATGAACCACGATCCCAAGCGAAGCAATCCTGGACCTTTAATGGTCAAGCCCGAATCTGACGATCGCAAACCCTCTTCTGCCGCCGCCGTCGGCAAGAAAATCGTTATCAAGAGCGCCGATATGTTCGGAGACATGCAGAAGGAGGCTGTTGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTTGCCGAGCTCATAAAGAAGGAGTTCGATAAGCGGCATGGCCCGACCTGGCATTGCATCGTCGGTCGTAATTTTGGTTCCTATGTGACACACGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCAGTTTTACTTTTCAAATCTGGTTGATGATTGTTCTCCCCTTGACAAAGATGCCACCAACTACTTTGGCATGGTGAGTCTGCGATAACAATGCTACGACAAGTTCTTGTATGTATAATCTAGTCTGCTGCCAATATGTAAATCACTTGTTGTAGCGTTTTTTATATCATAACTTAATATATCACTGGGGAGTAGATTAAATGATGAAACGAGAAATGCAATGTGCCATTTACATAAATGTCTCAAAAGGTTTCTTTGTCAATCTCATTAAAACAGAAGGTTGCAGTACAGGACCAATCTTCAAAAAAAGGGGGAAAAAAATGCTGTACCATTGGCCCAATGGTCAATGTCTCCTGAAAATTTTGTCATTATGTCTTGATAGATGAGTTTACGGTGGTTTTTAATGGGTTTTGGTGGTTAAATTTTCAACTACTGGCTCTGAAATATGCCTTGGAAGTTGATCTATAGAAGAGTAAATGCACCATTTTAGTACAAGATGGGGTGTTGACTGGAATTTTGAAACAAGAAGAATTTATGTACTGTTACTAAATAAAGGAAGGAGTTAAGGCTCTCTTTCTTTCACTCTTTGGTACTAAAGAAATGAGATTCTGGAG

Coding sequence (CDS)

ATGAACCACGATCCCAAGCGAAGCAATCCTGGACCTTTAATGGTCAAGCCCGAATCTGACGATCGCAAACCCTCTTCTGCCGCCGCCGTCGGCAAGAAAATCGTTATCAAGAGCGCCGATATGTTCGGAGACATGCAGAAGGAGGCTGTTGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTTGCCGAGCTCATAAAGAAGGAGTTCGATAAGCGGCATGGCCCGACCTGGCATTGCATCGTCGGTCGTAATTTTGGTTCCTATGTGACACACGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCAGTTTTACTTTTCAAATCTGGTTGA

Protein sequence

MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Homology

[Close]

BLAST of Tan0010558.1 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-31
Identity = 61/88 (69.32%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 30  VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRN 89
           V +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRN
Sbjct: 2   VDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 90  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  FGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Tan0010558.1 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFG 91
           +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFG
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Tan0010558.1 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFG 91
           +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFG
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Tan0010558.1 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFG 91
           +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFG
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Tan0010558.1 vs. ExPASy Swiss-Prot
Match: Q78P75 (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFG 91
           +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFG
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Tan0010558.1 vs. NCBI nr
Match: XP_022945423.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 226.5 bits (576), Expect = 1.2e-55
Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MNHD KRSNP PLMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1   MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

[Close]

BLAST of Tan0010558.1 vs. NCBI nr
Match: XP_022973755.1 (dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MNHD KRSNP  LMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1   MNHDSKRSNPS-LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 116

[Close]

BLAST of Tan0010558.1 vs. NCBI nr
Match: XP_038904701.1 (dynein light chain 1, cytoplasmic-like [Benincasa hispida])

HSP 1 Score: 214.2 bits (544), Expect = 6.2e-52
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN +  RSNP PLMVKPESDDRKPSSAAAV KKIVIKSADMF DMQKEA+DIAIAAFEKH
Sbjct: 1   MNQESHRSNPPPLMVKPESDDRKPSSAAAVSKKIVIKSADMFSDMQKEAIDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKD+AE IKK+FDK HGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA+LLFKSG
Sbjct: 61  SVEKDIAEQIKKQFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 117

[Close]

BLAST of Tan0010558.1 vs. NCBI nr
Match: XP_022979977.1 (dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 8.9e-51
Identity = 104/117 (88.89%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN + KRSNP PLMVKPES+DRK SS AA  KKIVIKSADMFG MQKEAVDIAIAAFEKH
Sbjct: 29  MNQESKRSNPNPLMVKPESEDRKASSVAAAAKKIVIKSADMFGHMQKEAVDIAIAAFEKH 88

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 89  SVEKDVAEQIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 145

[Close]

BLAST of Tan0010558.1 vs. NCBI nr
Match: XP_022955505.1 (dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 106/118 (89.83%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSS-AAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEK 60
           MN + KRSNP PLMVKPES+DRK SS AAA  KKIVIKSADMFGDMQKEAVDIAIAAFEK
Sbjct: 1   MNQESKRSNPNPLMVKPESEDRKASSVAAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60

Query: 61  HSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           HSVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 61  HSVEKDVAEHIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 118

[Close]

BLAST of Tan0010558.1 vs. ExPASy TrEMBL
Match: A0A6J1G0U9 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111449637 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.8e-56
Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MNHD KRSNP PLMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1   MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

[Close]

BLAST of Tan0010558.1 vs. ExPASy TrEMBL
Match: A0A6J1IC60 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472324 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.1e-54
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MNHD KRSNP  LMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1   MNHDSKRSNPS-LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 116

[Close]

BLAST of Tan0010558.1 vs. ExPASy TrEMBL
Match: A0A6J1IQ69 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111479508 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.3e-51
Identity = 104/117 (88.89%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN + KRSNP PLMVKPES+DRK SS AA  KKIVIKSADMFG MQKEAVDIAIAAFEKH
Sbjct: 29  MNQESKRSNPNPLMVKPESEDRKASSVAAAAKKIVIKSADMFGHMQKEAVDIAIAAFEKH 88

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 89  SVEKDVAEQIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 145

[Close]

BLAST of Tan0010558.1 vs. ExPASy TrEMBL
Match: A0A6J1GVA3 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111457511 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.4e-51
Identity = 106/118 (89.83%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSS-AAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEK 60
           MN + KRSNP PLMVKPES+DRK SS AAA  KKIVIKSADMFGDMQKEAVDIAIAAFEK
Sbjct: 1   MNQESKRSNPNPLMVKPESEDRKASSVAAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60

Query: 61  HSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           HSVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 61  HSVEKDVAEHIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 118

[Close]

BLAST of Tan0010558.1 vs. ExPASy TrEMBL
Match: A0A6J1C8U0 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111009373 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 101/117 (86.32%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN D KR+NP  LMVKPES+DRKPSSA  + +K+VIKSADMFGDMQKEAVDIAIAAFEK+
Sbjct: 1   MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKY 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           +VEKDVAE IK+EFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  AVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

[Close]

BLAST of Tan0010558.1 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-39
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 0


Query: 6   KRSNPGPLMVKPESDDRKPS-----SAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 65
           K+S  G    +   DDR+ S     ++   GK+ VIKSADM  DMQKEA++IAI+AFEK+
Sbjct: 7   KKSVNGGAPAQTILDDRRSSLPEVEASPPAGKRAVIKSADMKDDMQKEAIEIAISAFEKY 66

Query: 66  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKD+AE IKKEFDK+HG TWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 67  SVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 123

[Close]

BLAST of Tan0010558.1 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-15
Identity = 49/102 (48.04%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 18  ESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAELIKKEF 77
           E D      AAA    + I +ADM G MQ  A   A   + + EK S  K +A  +KKEF
Sbjct: 101 ERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEF 160

Query: 78  DKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS 117
           DK +GP WHCIVG +FGS+VTH T  F+YF +D+  VLLFK+
Sbjct: 161 DKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKT 201

[Close]

BLAST of Tan0010558.1 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 36  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGS 95
           ++++DM    Q  A  ++   + A    +  K +A  +KK+FD  +GP WHCIVG +FGS
Sbjct: 38  VRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGS 97

Query: 96  YVTHETNHFVYFYLDQKAVLLFKS 117
           YVTH T  F+YF +D+  VLLFK+
Sbjct: 98  YVTHSTGGFLYFQIDKVYVLLFKT 121

[Close]

BLAST of Tan0010558.1 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-12
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 33  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVE--KDVAELIKKEFDKRHGPTWHCIVGRNF 92
           K +++ +DM   MQ +A+  A  A +   V   K +A  IKKEFD+R+G  W C+VG NF
Sbjct: 5   KAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNF 64

Query: 93  GSYVTHETNHFVYFYLDQKAVLLFK 116
           G + TH    F+YF L+    L+FK
Sbjct: 65  GCFFTHSKGTFIYFQLETLKFLIFK 89

[Close]

BLAST of Tan0010558.1 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-11
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 33  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAELIKKEFDKRHGPTWHCIVGRNF 92
           K V+   DM   M+++A+ +A  A +   V +   +A  IKKEFD+ +G  W CIVG +F
Sbjct: 5   KAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHF 64

Query: 93  GSYVTHETNHFVYFYLDQKAVLLFK 116
           GS+VTH +  F++F +    +LLFK
Sbjct: 65  GSFVTHCSGCFIHFSVGSLTILLFK 89

The following BLAST results are available for this feature:

BLAST of Tan0010558.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q22799	4.8e-31	69.32	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q3MHR3	1.1e-30	70.93	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]
Q96FJ2	1.1e-30	70.93	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1	[more]
Q9D0M5	1.1e-30	70.93	Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1	[more]
Q78P75	1.1e-30	70.93	Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 S...	[more]

BLAST of Tan0010558.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945423.1	1.2e-55	94.02	dynein light chain 1, cytoplasmic-like [Cucurbita moschata]	[more]
XP_022973755.1	1.5e-53	93.16	dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima]	[more]
XP_038904701.1	6.2e-52	88.89	dynein light chain 1, cytoplasmic-like [Benincasa hispida]	[more]
XP_022979977.1	8.9e-51	88.89	dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima]	[more]
XP_022955505.1	1.5e-50	89.83	dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata]	[more]

BLAST of Tan0010558.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G0U9	5.8e-56	94.02	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111449637 PE=3 SV=1	[more]
A0A6J1IC60	7.1e-54	93.16	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472324 PE=3 SV=1	[more]
A0A6J1IQ69	4.3e-51	88.89	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111479508 PE=3 SV=1	[more]
A0A6J1GVA3	7.4e-51	89.83	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111457511 PE=3 SV=1	[more]
A0A6J1C8U0	1.6e-50	86.32	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111009373 PE=3 SV=1	[more]

BLAST of Tan0010558.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15930.1	2.2e-39	70.09	Dynein light chain type 1 family protein	[more]
AT5G20110.1	1.3e-15	48.04	Dynein light chain type 1 family protein	[more]
AT1G23220.1	1.2e-13	42.86	Dynein light chain type 1 family protein	[more]
AT1G52240.2	8.7e-12	41.18	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G27360.1	1.9e-11	40.00	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 29..116 e-value: 3.6E-51 score: 186.0
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 33..116 e-value: 2.2E-37 score: 127.3
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 18..117
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 30..117 e-value: 4.2E-40 score: 137.8
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 31..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR11886:SF95	DYNEIN LIGHT CHAIN	coord: 18..117
IPR019763	Dynein light chain, type 1/2, conserved site	PROSITE	PS01239	DYNEIN_LIGHT_1	coord: 83..97

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0010558	Tan0010558	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010558.1-five_prime_utr	Tan0010558.1-five_prime_utr-LG10:9075613..9075792	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010558.1-exon	Tan0010558.1-exon-LG10:9075613..9075957	exon
Tan0010558.1-exon	Tan0010558.1-exon-LG10:9076062..9076167	exon
Tan0010558.1-exon	Tan0010558.1-exon-LG10:9077696..9078365	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010558.1-cds	Tan0010558.1-cds-LG10:9075793..9075957	CDS
Tan0010558.1-cds	Tan0010558.1-cds-LG10:9076062..9076167	CDS
Tan0010558.1-cds	Tan0010558.1-cds-LG10:9077696..9077778	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0010558.1-three_prime_utr	Tan0010558.1-three_prime_utr-LG10:9077779..9078365	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0010558.1	Tan0010558.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005875	microtubule associated complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding