Tan0010558.1 (mRNA) Snake gourd v1

Overview
NameTan0010558.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDynein light chain
LocationLG10: 9075613 .. 9078365 (+)
Sequence length1121
RNA-Seq ExpressionTan0010558.1
SyntenyTan0010558.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGAAAAAACTTAAAATGACTGGGCCTCGGGAATCTTACAGAAGAGACGCAGAGGGATAGTGGTTGAGAGTGAGAGCCTTTCTTCTCCCTCTTCTTCTTCTTCCTCTCTCTCTCTCTCTGTTCATCTCTTACCAGCTACCACCAAACCAAATATATTCCCAAAACCTTCACAACAACATGAACCACGATCCCAAGCGAAGCAATCCTGGACCTTTAATGGTCAAGCCCGAATCTGACGATCGCAAACCCTCTTCTGCCGCCGCCGTCGGCAAGAAAATCGTTATCAAGAGCGCCGATATGTTCGGAGACATGCAGAAGGAGGCTGTTGACATTGCCATAGCCGTTAGTCCTTCTTTCTCTCGAAATAGCTACTCTCCATCTCTTATTCAAATCCATTCCGCAAGTAATTGCTTCCGATTCTGTTTCGTTTTCTTCTTCTTGTTTAGGCATTTGAGAAGCATTCCGTCGAGAAGGATGTTGCCGAGCTCATAAAGAAGGAGTTCGATAAGCGGCATGGCCCGACCTGGCATTGCATCGTCGGTCGTAATTTTGGTAGCGTATCTCACTCTCTTTGTGGAATCTCTAGCTTCCTGCTTAATTTTCACTTTCTTTCACTCTGATGAATTGAATCGCTATAAATTTCTGTTACTTTAGTCTCTTAACGAAAGTTCCGTTACTCCAGTTCATTCTCTAGCTTTTTTTCCCCTACTGAAATGGAGATCTAGCTTTTAATTTTTTTTTTCCGGCGAATAATTTGAAGGAGAGGCATGGTTTTTTCGGGATTCTGACACCATTAGCTTAACTCTTGTTTCAGGCTCCACCACTTAGCAGGAGCAAGATTTGTCTGCATAGGCAGTATTAGCCCAGTAGTGTTAAGTACATTGAAATTGCATATATTCTTGCATCACTAGGTAAGTGGCTCTATTGGAGAAACTCTATATTGAATTTGCTAGCTAATTCACAGCTACAGCAATCGTGTCAACTGAAATCAATATCACTGGATGGTCTGGCTATGGTGGCAACCAGGGGGTGGGGGCTCCCCCACGAAGTTTGATGATGAGGCCAACTAACTTAGTGAGATAGAATTGTTTGGAACTATGCTAGTTGAATATAGGGACAAAAACCAATGGGTGGTTTTGAATAGTTTTTTTTTTTTTTTTTTGGGGATCAAATCTTCCTATTCTTCATTTTTTTTTAAAAAATAAGAATATTAGGCTGTATCATGTAAGCAGAATTTGAGTTGGTTTTGCTAGTCGTAATTCAATCGAAGCATTAATGCTTTTAGTTTTATGTTGCAATATGGTCAGGCATCTAGTCATCGTGGCACTCATAAACTAGCTGACTTCACTATGATATTGTCTCTTTTGCAATTTTTGTTCTGTTTGCACGGTGAAAGGTAGGAATCAAAACATCCTGTTTCATGTTTAATTTAAGTATCAAATGTTCAGTTCTTGGTATTTATGGGATGTAAAAGATCGCCTGACTGAGTAACAGGGAGGTGATCTGCAACTTCTTTTTTTCTTTGTGCTGTTAGGGAAACGGAAAATTCTTATAGCCAAAGAATAAAAGTTTGTGATCACTCGGACAAGAGAGAGTTACTAATATAAACTTAAAGTACACTCTTTTTATCATGCCATTCTAAGATTTAGAGCTGAACGCTAAATGCTTTGAGCGCGGTTTCCGTTGTCTTATAGAGCCAAAAATTACTTTACGTTGCCAATTCTTTCATCCCAAGCCTTAAAAGAACCTGTTGGTATTAGTGTGATCCATTTAGTTTTTTCATTTTGGCTGAGCGAGCTTAATTGCTAACTATACATTCCTGGCTTGAATATTGCAAGCTCTTGGTAGCTATTATGTAGCAGATGAAAAGAACCTATAGTTCTAGTTGCTGGCTTCAGACTGCTAATTTTGGAAAATTTTGGAAAATTCCAAAAACTATGCTCCCTTATCTCCATGAATGTTGCAGTGCATTGTCTTGTTCTTGATTATTGAGCTTTATTCAGGGTCCTACTTGTGTTAGTTGTTTTTCCTGAATTAAATTAATATCTCAAATGATTCTATTTTCTGGTTTCTGTTTCAGGTTCCTATGTGACACACGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCAGTTTTACTTTTCAAATCTGGTTGATGATTGTTCTCCCCTTGACAAAGATGCCACCAACTACTTTGGCATGGTGAGTCTGCGATAACAATGCTACGACAAGTTCTTGTATGTATAATCTAGTCTGCTGCCAATATGTAAATCACTTGTTGTAGCGTTTTTTATATCATAACTTAATATATCACTGGGGAGTAGATTAAATGATGAAACGAGAAATGCAATGTGCCATTTACATAAATGTCTCAAAAGGTTTCTTTGTCAATCTCATTAAAACAGAAGGTTGCAGTACAGGACCAATCTTCAAAAAAAGGGGGAAAAAAATGCTGTACCATTGGCCCAATGGTCAATGTCTCCTGAAAATTTTGTCATTATGTCTTGATAGATGAGTTTACGGTGGTTTTTAATGGGTTTTGGTGGTTAAATTTTCAACTACTGGCTCTGAAATATGCCTTGGAAGTTGATCTATAGAAGAGTAAATGCACCATTTTAGTACAAGATGGGGTGTTGACTGGAATTTTGAAACAAGAAGAATTTATGTACTGTTACTAAATAAAGGAAGGAGTTAAGGCTCTCTTTCTTTCACTCTTTGGTACTAAAGAAATGAGATTCTGGAG

mRNA sequence

AAAAAGAAAAAACTTAAAATGACTGGGCCTCGGGAATCTTACAGAAGAGACGCAGAGGGATAGTGGTTGAGAGTGAGAGCCTTTCTTCTCCCTCTTCTTCTTCTTCCTCTCTCTCTCTCTCTGTTCATCTCTTACCAGCTACCACCAAACCAAATATATTCCCAAAACCTTCACAACAACATGAACCACGATCCCAAGCGAAGCAATCCTGGACCTTTAATGGTCAAGCCCGAATCTGACGATCGCAAACCCTCTTCTGCCGCCGCCGTCGGCAAGAAAATCGTTATCAAGAGCGCCGATATGTTCGGAGACATGCAGAAGGAGGCTGTTGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTTGCCGAGCTCATAAAGAAGGAGTTCGATAAGCGGCATGGCCCGACCTGGCATTGCATCGTCGGTCGTAATTTTGGTTCCTATGTGACACACGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCAGTTTTACTTTTCAAATCTGGTTGATGATTGTTCTCCCCTTGACAAAGATGCCACCAACTACTTTGGCATGGTGAGTCTGCGATAACAATGCTACGACAAGTTCTTGTATGTATAATCTAGTCTGCTGCCAATATGTAAATCACTTGTTGTAGCGTTTTTTATATCATAACTTAATATATCACTGGGGAGTAGATTAAATGATGAAACGAGAAATGCAATGTGCCATTTACATAAATGTCTCAAAAGGTTTCTTTGTCAATCTCATTAAAACAGAAGGTTGCAGTACAGGACCAATCTTCAAAAAAAGGGGGAAAAAAATGCTGTACCATTGGCCCAATGGTCAATGTCTCCTGAAAATTTTGTCATTATGTCTTGATAGATGAGTTTACGGTGGTTTTTAATGGGTTTTGGTGGTTAAATTTTCAACTACTGGCTCTGAAATATGCCTTGGAAGTTGATCTATAGAAGAGTAAATGCACCATTTTAGTACAAGATGGGGTGTTGACTGGAATTTTGAAACAAGAAGAATTTATGTACTGTTACTAAATAAAGGAAGGAGTTAAGGCTCTCTTTCTTTCACTCTTTGGTACTAAAGAAATGAGATTCTGGAG

Coding sequence (CDS)

ATGAACCACGATCCCAAGCGAAGCAATCCTGGACCTTTAATGGTCAAGCCCGAATCTGACGATCGCAAACCCTCTTCTGCCGCCGCCGTCGGCAAGAAAATCGTTATCAAGAGCGCCGATATGTTCGGAGACATGCAGAAGGAGGCTGTTGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTTGCCGAGCTCATAAAGAAGGAGTTCGATAAGCGGCATGGCCCGACCTGGCATTGCATCGTCGGTCGTAATTTTGGTTCCTATGTGACACACGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCAGTTTTACTTTTCAAATCTGGTTGA

Protein sequence

MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Homology
BLAST of Tan0010558.1 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-31
Identity = 61/88 (69.32%), Postives = 74/88 (84.09%), Query Frame = 0

Query: 30  VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRN 89
           V +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRN
Sbjct: 2   VDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 90  FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62  FGSYVTHETKHFIYFYLGQVAILLFKSG 89

BLAST of Tan0010558.1 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFG 91
           +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFG
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

BLAST of Tan0010558.1 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFG 91
           +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFG
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

BLAST of Tan0010558.1 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFG 91
           +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFG
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

BLAST of Tan0010558.1 vs. ExPASy Swiss-Prot
Match: Q78P75 (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 32  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFG 91
           +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFG
Sbjct: 4   RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92  SYVTHETNHFVYFYLDQKAVLLFKSG 118
           SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64  SYVTHETKHFIYFYLGQVAILLFKSG 89

BLAST of Tan0010558.1 vs. NCBI nr
Match: XP_022945423.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 226.5 bits (576), Expect = 1.2e-55
Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0

Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MNHD KRSNP PLMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1   MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

BLAST of Tan0010558.1 vs. NCBI nr
Match: XP_022973755.1 (dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0

Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MNHD KRSNP  LMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1   MNHDSKRSNPS-LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 116

BLAST of Tan0010558.1 vs. NCBI nr
Match: XP_038904701.1 (dynein light chain 1, cytoplasmic-like [Benincasa hispida])

HSP 1 Score: 214.2 bits (544), Expect = 6.2e-52
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 0

Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN +  RSNP PLMVKPESDDRKPSSAAAV KKIVIKSADMF DMQKEA+DIAIAAFEKH
Sbjct: 1   MNQESHRSNPPPLMVKPESDDRKPSSAAAVSKKIVIKSADMFSDMQKEAIDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKD+AE IKK+FDK HGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA+LLFKSG
Sbjct: 61  SVEKDIAEQIKKQFDKNHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAILLFKSG 117

BLAST of Tan0010558.1 vs. NCBI nr
Match: XP_022979977.1 (dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 8.9e-51
Identity = 104/117 (88.89%), Postives = 108/117 (92.31%), Query Frame = 0

Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN + KRSNP PLMVKPES+DRK SS AA  KKIVIKSADMFG MQKEAVDIAIAAFEKH
Sbjct: 29  MNQESKRSNPNPLMVKPESEDRKASSVAAAAKKIVIKSADMFGHMQKEAVDIAIAAFEKH 88

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 89  SVEKDVAEQIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 145

BLAST of Tan0010558.1 vs. NCBI nr
Match: XP_022955505.1 (dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 106/118 (89.83%), Postives = 110/118 (93.22%), Query Frame = 0

Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSS-AAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEK 60
           MN + KRSNP PLMVKPES+DRK SS AAA  KKIVIKSADMFGDMQKEAVDIAIAAFEK
Sbjct: 1   MNQESKRSNPNPLMVKPESEDRKASSVAAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60

Query: 61  HSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           HSVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 61  HSVEKDVAEHIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 118

BLAST of Tan0010558.1 vs. ExPASy TrEMBL
Match: A0A6J1G0U9 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111449637 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.8e-56
Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0

Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MNHD KRSNP PLMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1   MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

BLAST of Tan0010558.1 vs. ExPASy TrEMBL
Match: A0A6J1IC60 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472324 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.1e-54
Identity = 109/117 (93.16%), Postives = 112/117 (95.73%), Query Frame = 0

Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MNHD KRSNP  LMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1   MNHDSKRSNPS-LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 116

BLAST of Tan0010558.1 vs. ExPASy TrEMBL
Match: A0A6J1IQ69 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111479508 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.3e-51
Identity = 104/117 (88.89%), Postives = 108/117 (92.31%), Query Frame = 0

Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN + KRSNP PLMVKPES+DRK SS AA  KKIVIKSADMFG MQKEAVDIAIAAFEKH
Sbjct: 29  MNQESKRSNPNPLMVKPESEDRKASSVAAAAKKIVIKSADMFGHMQKEAVDIAIAAFEKH 88

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 89  SVEKDVAEQIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 145

BLAST of Tan0010558.1 vs. ExPASy TrEMBL
Match: A0A6J1GVA3 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111457511 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.4e-51
Identity = 106/118 (89.83%), Postives = 110/118 (93.22%), Query Frame = 0

Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSS-AAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEK 60
           MN + KRSNP PLMVKPES+DRK SS AAA  KKIVIKSADMFGDMQKEAVDIAIAAFEK
Sbjct: 1   MNQESKRSNPNPLMVKPESEDRKASSVAAAAAKKIVIKSADMFGDMQKEAVDIAIAAFEK 60

Query: 61  HSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           HSVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYLDQKAVLLFKSG
Sbjct: 61  HSVEKDVAEHIKKEFDQRHGPTWHCIVGRNFGSYVTHESNHFVYFYLDQKAVLLFKSG 118

BLAST of Tan0010558.1 vs. ExPASy TrEMBL
Match: A0A6J1C8U0 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111009373 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 101/117 (86.32%), Postives = 109/117 (93.16%), Query Frame = 0

Query: 1   MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN D KR+NP  LMVKPES+DRKPSSA  + +K+VIKSADMFGDMQKEAVDIAIAAFEK+
Sbjct: 1   MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKY 60

Query: 61  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           +VEKDVAE IK+EFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 61  AVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 117

BLAST of Tan0010558.1 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-39
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 0

Query: 6   KRSNPGPLMVKPESDDRKPS-----SAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 65
           K+S  G    +   DDR+ S     ++   GK+ VIKSADM  DMQKEA++IAI+AFEK+
Sbjct: 7   KKSVNGGAPAQTILDDRRSSLPEVEASPPAGKRAVIKSADMKDDMQKEAIEIAISAFEKY 66

Query: 66  SVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
           SVEKD+AE IKKEFDK+HG TWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 67  SVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 123

BLAST of Tan0010558.1 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-15
Identity = 49/102 (48.04%), Postives = 62/102 (60.78%), Query Frame = 0

Query: 18  ESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAELIKKEF 77
           E D      AAA    + I +ADM G MQ  A   A   + + EK S  K +A  +KKEF
Sbjct: 101 ERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEF 160

Query: 78  DKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS 117
           DK +GP WHCIVG +FGS+VTH T  F+YF +D+  VLLFK+
Sbjct: 161 DKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKT 201

BLAST of Tan0010558.1 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0

Query: 36  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGS 95
           ++++DM    Q  A  ++   + A    +  K +A  +KK+FD  +GP WHCIVG +FGS
Sbjct: 38  VRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGS 97

Query: 96  YVTHETNHFVYFYLDQKAVLLFKS 117
           YVTH T  F+YF +D+  VLLFK+
Sbjct: 98  YVTHSTGGFLYFQIDKVYVLLFKT 121

BLAST of Tan0010558.1 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-12
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 0

Query: 33  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVE--KDVAELIKKEFDKRHGPTWHCIVGRNF 92
           K +++ +DM   MQ +A+  A  A +   V   K +A  IKKEFD+R+G  W C+VG NF
Sbjct: 5   KAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNF 64

Query: 93  GSYVTHETNHFVYFYLDQKAVLLFK 116
           G + TH    F+YF L+    L+FK
Sbjct: 65  GCFFTHSKGTFIYFQLETLKFLIFK 89

BLAST of Tan0010558.1 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-11
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 33  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAELIKKEFDKRHGPTWHCIVGRNF 92
           K V+   DM   M+++A+ +A  A +   V +   +A  IKKEFD+ +G  W CIVG +F
Sbjct: 5   KAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHF 64

Query: 93  GSYVTHETNHFVYFYLDQKAVLLFK 116
           GS+VTH +  F++F +    +LLFK
Sbjct: 65  GSFVTHCSGCFIHFSVGSLTILLFK 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q227994.8e-3169.32Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=... [more]
Q3MHR31.1e-3070.93Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1[more]
Q96FJ21.1e-3070.93Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1[more]
Q9D0M51.1e-3070.93Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1[more]
Q78P751.1e-3070.93Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 S... [more]
Match NameE-valueIdentityDescription
XP_022945423.11.2e-5594.02dynein light chain 1, cytoplasmic-like [Cucurbita moschata][more]
XP_022973755.11.5e-5393.16dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima][more]
XP_038904701.16.2e-5288.89dynein light chain 1, cytoplasmic-like [Benincasa hispida][more]
XP_022979977.18.9e-5188.89dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima][more]
XP_022955505.11.5e-5089.83dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A6J1G0U95.8e-5694.02Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111449637 PE=3 SV=1[more]
A0A6J1IC607.1e-5493.16Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472324 PE=3 SV=1[more]
A0A6J1IQ694.3e-5188.89Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111479508 PE=3 SV=1[more]
A0A6J1GVA37.4e-5189.83Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111457511 PE=3 SV=1[more]
A0A6J1C8U01.6e-5086.32Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111009373 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G15930.12.2e-3970.09Dynein light chain type 1 family protein [more]
AT5G20110.11.3e-1548.04Dynein light chain type 1 family protein [more]
AT1G23220.11.2e-1342.86Dynein light chain type 1 family protein [more]
AT1G52240.28.7e-1241.18RHO guanyl-nucleotide exchange factor 11 [more]
AT4G27360.11.9e-1140.00Dynein light chain type 1 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 29..116
e-value: 3.6E-51
score: 186.0
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 33..116
e-value: 2.2E-37
score: 127.3
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 18..117
IPR037177Dynein light chain superfamilyGENE3D3.30.740.10Protein Inhibitor Of Neuronal Nitric Oxide Synthase;coord: 30..117
e-value: 4.2E-40
score: 137.8
IPR037177Dynein light chain superfamilySUPERFAMILY54648DLCcoord: 31..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR11886:SF95DYNEIN LIGHT CHAINcoord: 18..117
IPR019763Dynein light chain, type 1/2, conserved sitePROSITEPS01239DYNEIN_LIGHT_1coord: 83..97

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0010558Tan0010558gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0010558.1-five_prime_utrTan0010558.1-five_prime_utr-LG10:9075613..9075792five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0010558.1-exonTan0010558.1-exon-LG10:9075613..9075957exon
Tan0010558.1-exonTan0010558.1-exon-LG10:9076062..9076167exon
Tan0010558.1-exonTan0010558.1-exon-LG10:9077696..9078365exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0010558.1-cdsTan0010558.1-cds-LG10:9075793..9075957CDS
Tan0010558.1-cdsTan0010558.1-cds-LG10:9076062..9076167CDS
Tan0010558.1-cdsTan0010558.1-cds-LG10:9077696..9077778CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0010558.1-three_prime_utrTan0010558.1-three_prime_utr-LG10:9077779..9078365three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0010558.1Tan0010558.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0030286 dynein complex
cellular_component GO:0005875 microtubule associated complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005874 microtubule
molecular_function GO:0045505 dynein intermediate chain binding
molecular_function GO:0051959 dynein light intermediate chain binding