Tan0009125.1 (mRNA) Snake gourd v1

Overview


Name	Tan0009125.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Epidermal patterning factor-like protein
Location	LG03: 73964363 .. 73964932 (+)
Sequence length	485
RNA-Seq Expression	Tan0009125.1
Synteny	Tan0009125.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCCCTTGCACTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTAGTTACTTATTTGTGGGTAACAGAAAAATCTGGCAACTGGGTCTTTATTGCGTATGATTTTTACTCCTTTGCTGCGTTGGATCCATGAGTTTTGGGCATCAATGACTTGATGACTACCATGAATTTGCCTGCTGTTTGGGCCACTTCATTACTTATTGTGCTTCTTCATCTTCTCCTTCTTCTCTCCGCCTCTTCCCCTCCCAGAGTATGCCTTTCTTTCTCTCTTTCATGCCCTTTCTTTCTGATATTGCTAGTGACTCTGTTTCTCAGTTTGGTTTGCTTGCTATCAGGGTATGTTTTTCGAAGAGAAAACCAGGCTCGGATCCACCCCACCGAGCTGCCACAACAAATGCAACGAGTGCCATCCATGCATGGCGGTCCAAGTGCCTAGTATGCCCAGCCGCGCCAGCCGCTCGGCTTTGCCAATGGGGTTTTTTGTGTCATCTCCACAAGAAAACAGATACTCATTTTACAAGCCCTTGGGTTGGAAGTGCCGCTGTGGGAACCATTTCTTCAATCCTTAA

mRNA sequence

GTTTCCCTTGCACTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTAGTTACTTATTTGTGGGTAACAGAAAAATCTGGCAACTGGGTCTTTATTGCGTATGATTTTTACTCCTTTGCTGCGTTGGATCCATGAGTTTTGGGCATCAATGACTTGATGACTACCATGAATTTGCCTGCTGTTTGGGCCACTTCATTACTTATTGTGCTTCTTCATCTTCTCCTTCTTCTCTCCGCCTCTTCCCCTCCCAGAGGTATGTTTTTCGAAGAGAAAACCAGGCTCGGATCCACCCCACCGAGCTGCCACAACAAATGCAACGAGTGCCATCCATGCATGGCGGTCCAAGTGCCTAGTATGCCCAGCCGCGCCAGCCGCTCGGCTTTGCCAATGGGGTTTTTTGTGTCATCTCCACAAGAAAACAGATACTCATTTTACAAGCCCTTGGGTTGGAAGTGCCGCTGTGGGAACCATTTCTTCAATCCTTAA

Coding sequence (CDS)

ATGACTACCATGAATTTGCCTGCTGTTTGGGCCACTTCATTACTTATTGTGCTTCTTCATCTTCTCCTTCTTCTCTCCGCCTCTTCCCCTCCCAGAGGTATGTTTTTCGAAGAGAAAACCAGGCTCGGATCCACCCCACCGAGCTGCCACAACAAATGCAACGAGTGCCATCCATGCATGGCGGTCCAAGTGCCTAGTATGCCCAGCCGCGCCAGCCGCTCGGCTTTGCCAATGGGGTTTTTTGTGTCATCTCCACAAGAAAACAGATACTCATTTTACAAGCCCTTGGGTTGGAAGTGCCGCTGTGGGAACCATTTCTTCAATCCTTAA

Protein sequence

MTTMNLPAVWATSLLIVLLHLLLLLSASSPPRGMFFEEKTRLGSTPPSCHNKCNECHPCMAVQVPSMPSRASRSALPMGFFVSSPQENRYSFYKPLGWKCRCGNHFFNP

Homology

[Close]

BLAST of Tan0009125.1 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-21
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 8   AVWATSLLIVLLHLLLLLSAS-----------SPPRGMFFEEKTRLGSTPPSCHNKCNEC 67
           A++ ++LL++ L L+LL++               P+    E+K RLGSTPPSCHN+CN C
Sbjct: 3   AIYKSTLLLLPLILILLITPQVSSFLQPIQPPISPQVALIEDKARLGSTPPSCHNRCNNC 62

Query: 68  HPCMAVQVPSMP--SRASRSALPMGFFVSSPQE-----NRYSFYKPLGWKCRCGNHFFNP 110
           HPCMA+QVP++P  SR +R     G FV  P       ++YS YKP+GWKC C  HF+NP
Sbjct: 63  HPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Tan0009125.1 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.9e-06
Identity = 38/127 (29.92%), Postives = 57/127 (44.88%), Query Frame = 0


Query: 9   VWA---TSLLIVLL-----HLLLLLSASSPPRGMFFEE----------KTRLGSTPPSCH 68
           VW+   +S L++LL     H  L+ +    P  + F +          +  +GS PP C 
Sbjct: 2   VWSSNMSSFLLILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCE 61

Query: 69  N-KCNECHPCMAVQVPSMPSRASRSALPMGFFVSS-------PQENRYSFYKPLGWKCRC 110
             +C  C  C A+QVP+ P     S L      SS        + +  + YKP+ WKC+C
Sbjct: 62  RVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKC 121

[Close]

BLAST of Tan0009125.1 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.8e-06
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 37  EEKTRLGSTPPSCHNKCNECHPCMAVQVPSMPSRASRSALPMGFFVSSPQENRYSFYKPL 96
           + + R+GS PPSC  KC  C PC A+Q P++      S++P      SP    Y+ Y+P 
Sbjct: 52  KRRRRIGSKPPSCEKKCYGCEPCEAIQFPTI------SSIPH----LSP---HYANYQPE 104

Query: 97  GWKCRC 103
           GW+C C
Sbjct: 112 GWRCHC 104

[Close]

BLAST of Tan0009125.1 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-05
Identity = 25/68 (36.76%), Postives = 33/68 (48.53%), Query Frame = 0


Query: 42  LGSTPPSCHNKCNECHPCMAVQVPSMPSRASRSALPMGFFVSSPQENRYSFYKPLGWKCR 101
           LGS+PP C +KC  C PC  V VP          +P G  V++        Y P  W+C+
Sbjct: 106 LGSSPPRCSSKCGRCTPCKPVHVP----------VPPGTPVTAE-------YYPEAWRCK 156

Query: 102 CGNHFFNP 110
           CGN  + P
Sbjct: 166 CGNKLYMP 156

[Close]

BLAST of Tan0009125.1 vs. NCBI nr
Match: KGN48738.1 (hypothetical protein Csa_003101 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 2.7e-49
Identity = 101/113 (89.38%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MTTMNLPAVWATSLLIVLLHLLLLLSASSPPRGMFFEEKTRLGSTPPSCHNKCNECHPCM 60
           MTTMNL  VWATSLLIVLLHLLLLLSASSPPRGMFFE+KTRLGSTPPSCHNKCNECHPCM
Sbjct: 5   MTTMNLATVWATSLLIVLLHLLLLLSASSPPRGMFFEDKTRLGSTPPSCHNKCNECHPCM 64

Query: 61  AVQVPSMPSRASR----SALPMGFFVSSPQENRYSFYKPLGWKCRCGNHFFNP 110
           AVQVPSMP RASR    SALPM FF SS Q NRYSFYKPLGWKCRCGNHFFNP
Sbjct: 65  AVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 117

[Close]

BLAST of Tan0009125.1 vs. NCBI nr
Match: XP_008440584.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 7.8e-49
Identity = 100/113 (88.50%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MTTMNLPAVWATSLLIVLLHLLLLLSASSPPRGMFFEEKTRLGSTPPSCHNKCNECHPCM 60
           MTTMNL  VWATSLLIVLLHLLLLLSASSPPRG+FFE+KTRLGSTPPSCHNKCNECHPCM
Sbjct: 22  MTTMNLATVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCM 81

Query: 61  AVQVPSMPSRASR----SALPMGFFVSSPQENRYSFYKPLGWKCRCGNHFFNP 110
           AVQVPSMP RASR    SALPM FF SS Q NRYSFYKPLGWKCRCGNHFFNP
Sbjct: 82  AVQVPSMPGRASRLDSSSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 134

[Close]

BLAST of Tan0009125.1 vs. NCBI nr
Match: KAG6604039.1 (EPIDERMAL PATTERNING FACTOR-like protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034205.1 EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.8 bits (473), Expect = 9.9e-44
Identity = 92/113 (81.42%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 1   MTTMNLPAVWATSLLIVLLHLLLLLSASSPPRGMFFEEKTRLGSTPPSCHNKCNECHPCM 60
           MTTMNL  VWATSLL+VL+HLL LLSAS PP G+ FE+KTRLGSTPPSCHNKCNECHPCM
Sbjct: 1   MTTMNLATVWATSLLLVLVHLLPLLSASPPPIGISFEDKTRLGSTPPSCHNKCNECHPCM 60

Query: 61  AVQVPSMPSRASR----SALPMGFFVSSPQENRYSFYKPLGWKCRCGNHFFNP 110
           AVQVPSMP RA R    SALPM FF SSPQ NRYSFYKPL WKCRCGN FFNP
Sbjct: 61  AVQVPSMPRRAGRLDSPSALPMRFFDSSPQGNRYSFYKPLSWKCRCGNRFFNP 113

[Close]

BLAST of Tan0009125.1 vs. NCBI nr
Match: KAA0036313.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo var. makuwa] >TYK12707.1 EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 9.3e-34
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 33  GMFFEEKTRLGSTPPSCHNKCNECHPCMAVQVPSMPSRASR----SALPMGFFVSSPQEN 92
           G+FFE+KTRLGSTPPSCHNKCNECHPCMAVQVPSMP RASR    SALPM FF SS Q N
Sbjct: 29  GIFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRASRLDSSSALPMRFFDSSSQGN 88

Query: 93  RYSFYKPLGWKCRCGNHFFNP 110
           RYSFYKPLGWKCRCGNHFFNP
Sbjct: 89  RYSFYKPLGWKCRCGNHFFNP 109

[Close]

BLAST of Tan0009125.1 vs. NCBI nr
Match: XP_014508135.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 [Vigna radiata var. radiata])

HSP 1 Score: 132.1 bits (331), Expect = 2.9e-27
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 12  TSLLIVLL--HLLLLLSASS------PPRGMFFEEKTRLGSTPPSCHNKCNECHPCMAVQ 71
           TSLLIVLL  + L L+SAS+       PR + FEEK RLGS PPSCHNKCN+CHPCMAVQ
Sbjct: 13  TSLLIVLLLHNFLSLVSASNHPHTAISPRELLFEEKNRLGSIPPSCHNKCNDCHPCMAVQ 72

Query: 72  VPSMPSRASR-------SALPMGFFVSSPQENRYSFYKPLGWKCRCGNHFFNP 110
           VP++PS  S        SA+   F  SSPQ NRYS YKPLGWKC CG+HFFNP
Sbjct: 73  VPTLPSHDSNPPDLTKTSAMATFFNPSSPQGNRYSNYKPLGWKCHCGDHFFNP 125

[Close]

BLAST of Tan0009125.1 vs. ExPASy TrEMBL
Match: A0A0A0KGR1 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G499820 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 101/113 (89.38%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MTTMNLPAVWATSLLIVLLHLLLLLSASSPPRGMFFEEKTRLGSTPPSCHNKCNECHPCM 60
           MTTMNL  VWATSLLIVLLHLLLLLSASSPPRGMFFE+KTRLGSTPPSCHNKCNECHPCM
Sbjct: 5   MTTMNLATVWATSLLIVLLHLLLLLSASSPPRGMFFEDKTRLGSTPPSCHNKCNECHPCM 64

Query: 61  AVQVPSMPSRASR----SALPMGFFVSSPQENRYSFYKPLGWKCRCGNHFFNP 110
           AVQVPSMP RASR    SALPM FF SS Q NRYSFYKPLGWKCRCGNHFFNP
Sbjct: 65  AVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 117

[Close]

BLAST of Tan0009125.1 vs. ExPASy TrEMBL
Match: A0A1S3B112 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103484960 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.8e-49
Identity = 100/113 (88.50%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MTTMNLPAVWATSLLIVLLHLLLLLSASSPPRGMFFEEKTRLGSTPPSCHNKCNECHPCM 60
           MTTMNL  VWATSLLIVLLHLLLLLSASSPPRG+FFE+KTRLGSTPPSCHNKCNECHPCM
Sbjct: 22  MTTMNLATVWATSLLIVLLHLLLLLSASSPPRGIFFEDKTRLGSTPPSCHNKCNECHPCM 81

Query: 61  AVQVPSMPSRASR----SALPMGFFVSSPQENRYSFYKPLGWKCRCGNHFFNP 110
           AVQVPSMP RASR    SALPM FF SS Q NRYSFYKPLGWKCRCGNHFFNP
Sbjct: 82  AVQVPSMPGRASRLDSSSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 134

[Close]

BLAST of Tan0009125.1 vs. ExPASy TrEMBL
Match: A0A5A7T0A6 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002950 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.5e-34
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 33  GMFFEEKTRLGSTPPSCHNKCNECHPCMAVQVPSMPSRASR----SALPMGFFVSSPQEN 92
           G+FFE+KTRLGSTPPSCHNKCNECHPCMAVQVPSMP RASR    SALPM FF SS Q N
Sbjct: 29  GIFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRASRLDSSSALPMRFFDSSSQGN 88

Query: 93  RYSFYKPLGWKCRCGNHFFNP 110
           RYSFYKPLGWKCRCGNHFFNP
Sbjct: 89  RYSFYKPLGWKCRCGNHFFNP 109

[Close]

BLAST of Tan0009125.1 vs. ExPASy TrEMBL
Match: A0A1S3UQ46 (Epidermal patterning factor-like protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106767707 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 12  TSLLIVLL--HLLLLLSASS------PPRGMFFEEKTRLGSTPPSCHNKCNECHPCMAVQ 71
           TSLLIVLL  + L L+SAS+       PR + FEEK RLGS PPSCHNKCN+CHPCMAVQ
Sbjct: 13  TSLLIVLLLHNFLSLVSASNHPHTAISPRELLFEEKNRLGSIPPSCHNKCNDCHPCMAVQ 72

Query: 72  VPSMPSRASR-------SALPMGFFVSSPQENRYSFYKPLGWKCRCGNHFFNP 110
           VP++PS  S        SA+   F  SSPQ NRYS YKPLGWKC CG+HFFNP
Sbjct: 73  VPTLPSHDSNPPDLTKTSAMATFFNPSSPQGNRYSNYKPLGWKCHCGDHFFNP 125

[Close]

BLAST of Tan0009125.1 vs. ExPASy TrEMBL
Match: F6HJL0 (Epidermal patterning factor-like protein OS=Vitis vinifera OX=29760 GN=VIT_00s0391g00030 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 67/123 (54.47%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 1   MTTMNLPAVWATSLLIVLLHLLLLLSA-------SSPPRGMFFEEKTRLGSTPPSCHNKC 60
           M ++    ++  +++  +LHLLL  ++       S   RG+ FEEKTRLGSTPPSCHNKC
Sbjct: 1   MNSLGSYLLYTITVVTAVLHLLLSPASCFSQQQGSDSTRGLLFEEKTRLGSTPPSCHNKC 60

Query: 61  NECHPCMAVQVPSMPSRAS-----RSALPMGFFVSSPQ--ENRYSFYKPLGWKCRCGNHF 110
           NECHPCMAVQVP++PS +       + +PM FF SSP    NRYS YKPLGWKC CG+HF
Sbjct: 61  NECHPCMAVQVPTLPSHSGPRLGLTATVPMEFFESSPSTAANRYSNYKPLGWKCHCGDHF 120

[Close]

BLAST of Tan0009125.1 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-22
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 8   AVWATSLLIVLLHLLLLLSAS-----------SPPRGMFFEEKTRLGSTPPSCHNKCNEC 67
           A++ ++LL++ L L+LL++               P+    E+K RLGSTPPSCHN+CN C
Sbjct: 3   AIYKSTLLLLPLILILLITPQVSSFLQPIQPPISPQVALIEDKARLGSTPPSCHNRCNNC 62

Query: 68  HPCMAVQVPSMP--SRASRSALPMGFFVSSPQE-----NRYSFYKPLGWKCRCGNHFFNP 110
           HPCMA+QVP++P  SR +R     G FV  P       ++YS YKP+GWKC C  HF+NP
Sbjct: 63  HPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Tan0009125.1 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-07
Identity = 38/127 (29.92%), Postives = 57/127 (44.88%), Query Frame = 0


Query: 9   VWA---TSLLIVLL-----HLLLLLSASSPPRGMFFEE----------KTRLGSTPPSCH 68
           VW+   +S L++LL     H  L+ +    P  + F +          +  +GS PP C 
Sbjct: 2   VWSSNMSSFLLILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCE 61

Query: 69  N-KCNECHPCMAVQVPSMPSRASRSALPMGFFVSS-------PQENRYSFYKPLGWKCRC 110
             +C  C  C A+QVP+ P     S L      SS        + +  + YKP+ WKC+C
Sbjct: 62  RVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKC 121

[Close]

BLAST of Tan0009125.1 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). )

HSP 1 Score: 52.4 bits (124), Expect = 2.7e-07
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 37  EEKTRLGSTPPSCHNKCNECHPCMAVQVPSMPSRASRSALPMGFFVSSPQENRYSFYKPL 96
           + + R+GS PPSC  KC  C PC A+Q P++      S++P      SP    Y+ Y+P 
Sbjct: 52  KRRRRIGSKPPSCEKKCYGCEPCEAIQFPTI------SSIPH----LSP---HYANYQPE 104

Query: 97  GWKCRC 103
           GW+C C
Sbjct: 112 GWRCHC 104

[Close]

BLAST of Tan0009125.1 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06
Identity = 25/68 (36.76%), Postives = 33/68 (48.53%), Query Frame = 0


Query: 42  LGSTPPSCHNKCNECHPCMAVQVPSMPSRASRSALPMGFFVSSPQENRYSFYKPLGWKCR 101
           LGS+PP C +KC  C PC  V VP          +P G  V++        Y P  W+C+
Sbjct: 180 LGSSPPRCSSKCGRCTPCKPVHVP----------VPPGTPVTAE-------YYPEAWRCK 230

Query: 102 CGNHFFNP 110
           CGN  + P
Sbjct: 240 CGNKLYMP 230

[Close]

BLAST of Tan0009125.1 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06
Identity = 25/68 (36.76%), Postives = 33/68 (48.53%), Query Frame = 0


Query: 42  LGSTPPSCHNKCNECHPCMAVQVPSMPSRASRSALPMGFFVSSPQENRYSFYKPLGWKCR 101
           LGS+PP C +KC  C PC  V VP          +P G  V++        Y P  W+C+
Sbjct: 106 LGSSPPRCSSKCGRCTPCKPVHVP----------VPPGTPVTAE-------YYPEAWRCK 156

Query: 102 CGNHFFNP 110
           CGN  + P
Sbjct: 166 CGNKLYMP 156

The following BLAST results are available for this feature:

BLAST of Tan0009125.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFT5	1.4e-21	45.00	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9T068	2.9e-06	29.92	EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
C4B8C4	3.8e-06	39.39	EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q1PEY6	2.5e-05	36.76	EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of Tan0009125.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48738.1	2.7e-49	89.38	hypothetical protein Csa_003101 [Cucumis sativus]	[more]
XP_008440584.1	7.8e-49	88.50	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo]	[more]
KAG6604039.1	9.9e-44	81.42	EPIDERMAL PATTERNING FACTOR-like protein 1, partial [Cucurbita argyrosperma subs...	[more]
KAA0036313.1	9.3e-34	86.42	EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo var. makuwa] >TYK12707....	[more]
XP_014508135.1	2.9e-27	62.83	EPIDERMAL PATTERNING FACTOR-like protein 1 [Vigna radiata var. radiata]	[more]

BLAST of Tan0009125.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGR1	1.3e-49	89.38	Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G499...	[more]
A0A1S3B112	3.8e-49	88.50	Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103484960...	[more]
A0A5A7T0A6	4.5e-34	86.42	Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3UQ46	1.4e-27	62.83	Epidermal patterning factor-like protein OS=Vigna radiata var. radiata OX=3916 G...	[more]
F6HJL0	1.8e-27	54.47	Epidermal patterning factor-like protein OS=Vitis vinifera OX=29760 GN=VIT_00s03...	[more]

BLAST of Tan0009125.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10310.1	1.0e-22	45.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G37810.1	2.1e-07	29.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13898.1	2.7e-07	39.39	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]
AT2G30370.1	1.8e-06	36.76	allergen-related	[more]
AT2G30370.2	1.8e-06	36.76	allergen-related	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 41..109 e-value: 1.6E-21 score: 76.0
None	No IPR available	PANTHER	PTHR33109:SF3	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 1	coord: 13..109
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 13..109

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0009125	Tan0009125	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0009125.1-five_prime_utr	Tan0009125.1-five_prime_utr-LG03:73964363..73964517	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0009125.1-exon	Tan0009125.1-exon-LG03:73964363..73964613	exon
Tan0009125.1-exon	Tan0009125.1-exon-LG03:73964699..73964932	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0009125.1-cds	Tan0009125.1-cds-LG03:73964518..73964613	CDS
Tan0009125.1-cds	Tan0009125.1-cds-LG03:73964699..73964932	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0009125.1	Tan0009125.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010374	stomatal complex development
biological_process	GO:0010052	guard cell differentiation
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane