Tan0008785.1 (mRNA) Snake gourd v1

Overview


Name	Tan0008785.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty1-copia retrotransposon protein
Location	LG10: 63362492 .. 63362827 (+)
Sequence length	336
RNA-Seq Expression	Tan0008785.1
Synteny	Tan0008785.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAGCCACTCGATGGAGTAAATTACCGTCGTTTGTCCCAAAAACTGTTGATCTTCTTTGAGCAATTGAAGGTGGACTATGTTCTGACCACAAAATATTCAGATCGGGATCGATCCAACCTTACTGCTCCTGTTGATCTGGTCGCATCTACTGACACACAATCTGTCCACGTTCTTACCGATCCTGAAAATTTTGAGAAAGATAACAAGACTGTATGGGGCCATCTGCTCAACCGCATGACAGATTCCTTGTTTGATATGTTCGTCATTCAGAAATCTACAAAGGTCATCTAG

mRNA sequence

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAGCCACTCGATGGAGTAAATTACCGTCGTTTGTCCCAAAAACTGTTGATCTTCTTTGAGCAATTGAAGGTGGACTATGTTCTGACCACAAAATATTCAGATCGGGATCGATCCAACCTTACTGCTCCTGTTGATCTGGTCGCATCTACTGACACACAATCTGTCCACGTTCTTACCGATCCTGAAAATTTTGAGAAAGATAACAAGACTGTATGGGGCCATCTGCTCAACCGCATGACAGATTCCTTGTTTGATATGTTCGTCATTCAGAAATCTACAAAGGTCATCTAG

Coding sequence (CDS)

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAGCCACTCGATGGAGTAAATTACCGTCGTTTGTCCCAAAAACTGTTGATCTTCTTTGAGCAATTGAAGGTGGACTATGTTCTGACCACAAAATATTCAGATCGGGATCGATCCAACCTTACTGCTCCTGTTGATCTGGTCGCATCTACTGACACACAATCTGTCCACGTTCTTACCGATCCTGAAAATTTTGAGAAAGATAACAAGACTGTATGGGGCCATCTGCTCAACCGCATGACAGATTCCTTGTTTGATATGTTCGTCATTCAGAAATCTACAAAGGTCATCTAG

Protein sequence

MSIKSGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKYSDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTKVI

Homology

[Close]

BLAST of Tan0008785.1 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
           MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            + 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
            D  + T P+  VA TD      + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0008785.1 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
           MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            + 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
            D  + T P+  VA TD      + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0008785.1 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
           MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            + 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
            D  + T P+  VA TD      + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0008785.1 vs. NCBI nr
Match: TYK07981.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
           MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            + 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTS 60

Query: 61  RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
            D  + T P+  VA TD      + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0008785.1 vs. NCBI nr
Match: KAA0055836.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
           MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            + 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
            D  + T P+  VA TD      + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0008785.1 vs. ExPASy TrEMBL
Match: A0A5A7SKK3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004780 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
           MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            + 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
            D  + T P+  VA TD      + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0008785.1 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
           MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            + 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
            D  + T P+  VA TD      + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0008785.1 vs. ExPASy TrEMBL
Match: A0A5D3C7Z8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001160 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
           MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            + 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTS 60

Query: 61  RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
            D  + T P+  VA TD      + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0008785.1 vs. ExPASy TrEMBL
Match: A0A5A7UNH1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold104G00100 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
           MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            + 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
            D  + T P+  VA TD      + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0008785.1 vs. ExPASy TrEMBL
Match: A0A5D3DL36 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00280 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
           MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT            + 
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
            D  + T P+  VA TD      + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

The following BLAST results are available for this feature:

BLAST of Tan0008785.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008785.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04394.1	1.9e-26	59.02	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	1.9e-26	59.02	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06518.1	1.9e-26	59.02	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07981.1	1.9e-26	59.02	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055836.1	1.9e-26	59.02	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0008785.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SKK3	9.2e-27	59.02	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C5T2	9.2e-27	59.02	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C7Z8	9.2e-27	59.02	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UNH1	9.2e-27	59.02	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DL36	9.2e-27	59.02	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Tan0008785.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0008785	Tan0008785	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0008785.1-exon	Tan0008785.1-exon-LG10:63362492..63362827	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0008785.1-cds	Tan0008785.1-cds-LG10:63362492..63362827	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0008785.1	Tan0008785.1-protein	polypeptide