Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAGCCACTCGATGGAGTAAATTACCGTCGTTTGTCCCAAAAACTGTTGATCTTCTTTGAGCAATTGAAGGTGGACTATGTTCTGACCACAAAATATTCAGATCGGGATCGATCCAACCTTACTGCTCCTGTTGATCTGGTCGCATCTACTGACACACAATCTGTCCACGTTCTTACCGATCCTGAAAATTTTGAGAAAGATAACAAGACTGTATGGGGCCATCTGCTCAACCGCATGACAGATTCCTTGTTTGATATGTTCGTCATTCAGAAATCTACAAAGGTCATCTAG
mRNA sequence
ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAGCCACTCGATGGAGTAAATTACCGTCGTTTGTCCCAAAAACTGTTGATCTTCTTTGAGCAATTGAAGGTGGACTATGTTCTGACCACAAAATATTCAGATCGGGATCGATCCAACCTTACTGCTCCTGTTGATCTGGTCGCATCTACTGACACACAATCTGTCCACGTTCTTACCGATCCTGAAAATTTTGAGAAAGATAACAAGACTGTATGGGGCCATCTGCTCAACCGCATGACAGATTCCTTGTTTGATATGTTCGTCATTCAGAAATCTACAAAGGTCATCTAG
Coding sequence (CDS)
ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAGTTGGAGCCACTCGATGGAGTAAATTACCGTCGTTTGTCCCAAAAACTGTTGATCTTCTTTGAGCAATTGAAGGTGGACTATGTTCTGACCACAAAATATTCAGATCGGGATCGATCCAACCTTACTGCTCCTGTTGATCTGGTCGCATCTACTGACACACAATCTGTCCACGTTCTTACCGATCCTGAAAATTTTGAGAAAGATAACAAGACTGTATGGGGCCATCTGCTCAACCGCATGACAGATTCCTTGTTTGATATGTTCGTCATTCAGAAATCTACAAAGGTCATCTAG
Protein sequence
MSIKSGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKYSDRDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTKVI
Homology
BLAST of Tan0008785 vs. NCBI nr
Match:
TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 1 MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT +
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
D + T P+ VA TD + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61 SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
BLAST of Tan0008785 vs. NCBI nr
Match:
KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 1 MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT +
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
D + T P+ VA TD + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61 SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
BLAST of Tan0008785 vs. NCBI nr
Match:
TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 1 MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT +
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
D + T P+ VA TD + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61 SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
BLAST of Tan0008785 vs. NCBI nr
Match:
TYK07981.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 1 MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT +
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTS 60
Query: 61 RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
D + T P+ VA TD + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61 SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
BLAST of Tan0008785 vs. NCBI nr
Match:
KAA0055836.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 129.4 bits (324), Expect = 1.9e-26
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 1 MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT +
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
D + T P+ VA TD + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61 SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
BLAST of Tan0008785 vs. ExPASy TrEMBL
Match:
A0A5A7SKK3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004780 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 1 MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT +
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
D + T P+ VA TD + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61 SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
BLAST of Tan0008785 vs. ExPASy TrEMBL
Match:
A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 1 MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT +
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
D + T P+ VA TD + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61 SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
BLAST of Tan0008785 vs. ExPASy TrEMBL
Match:
A0A5D3C7Z8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001160 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 1 MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT +
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTS 60
Query: 61 RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
D + T P+ VA TD + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61 SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
BLAST of Tan0008785 vs. ExPASy TrEMBL
Match:
A0A5A7UNH1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold104G00100 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 1 MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT +
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
D + T P+ VA TD + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61 SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
BLAST of Tan0008785 vs. ExPASy TrEMBL
Match:
A0A5D3DL36 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00280 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 1 MSIK-SGKVLPDLSKLEPLDGVNYRRLSQKLLIFFEQLKVDYVLTTKY----------SD 60
MSIK S K+LPDLSKLEPLDG NYRR SQKLLIFFEQL+VDYVLTT +
Sbjct: 1 MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60
Query: 61 RDRSNLTAPVDLVASTDTQSVHVLTDPENFEKDNKTVWGHLLNRMTDSLFDMFVIQKSTK 112
D + T P+ VA TD + DPE + KDNKTV GHLLN M+D +FD+FV+QKS K
Sbjct: 61 SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| TYK04394.1 | 1.9e-26 | 59.02 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0056761.1 | 1.9e-26 | 59.02 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK06518.1 | 1.9e-26 | 59.02 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK07981.1 | 1.9e-26 | 59.02 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0055836.1 | 1.9e-26 | 59.02 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SKK3 | 9.2e-27 | 59.02 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3C5T2 | 9.2e-27 | 59.02 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3C7Z8 | 9.2e-27 | 59.02 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7UNH1 | 9.2e-27 | 59.02 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3DL36 | 9.2e-27 | 59.02 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
