Tan0006580.1 (mRNA) Snake gourd v1

Overview


Name	Tan0006580.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG08: 17289100 .. 17289348 (-)
Sequence length	249
RNA-Seq Expression	Tan0006580.1
Synteny	Tan0006580.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTTGACGGGAAGGGCAACCCAAAGCAACACGTTGCACATTTCGTCGAAACCTGCGAAAATGCAGGGACGCGTGGTGACCTCCTGGTCAAGCAATTCGTGCGTACCTTGAAAGGAAATGCCTTTGATTGGTACACTGATTTAGAACCAGAAACGATTGACAGCTGGGAACAATTCGAGAGAGAATTCCTAAATCGCTTCTACAGTACGAGGTGA

mRNA sequence

ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTTGACGGGAAGGGCAACCCAAAGCAACACGTTGCACATTTCGTCGAAACCTGCGAAAATGCAGGGACGCGTGGTGACCTCCTGGTCAAGCAATTCGTGCGTACCTTGAAAGGAAATGCCTTTGATTGGTACACTGATTTAGAACCAGAAACGATTGACAGCTGGGAACAATTCGAGAGAGAATTCCTAAATCGCTTCTACAGTACGAGGTGA

Coding sequence (CDS)

ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTTGACGGGAAGGGCAACCCAAAGCAACACGTTGCACATTTCGTCGAAACCTGCGAAAATGCAGGGACGCGTGGTGACCTCCTGGTCAAGCAATTCGTGCGTACCTTGAAAGGAAATGCCTTTGATTGGTACACTGATTTAGAACCAGAAACGATTGACAGCTGGGAACAATTCGAGAGAGAATTCCTAAATCGCTTCTACAGTACGAGGTGA

Protein sequence

MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR

Homology

[Close]

BLAST of Tan0006580.1 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 9.4e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 202 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 261

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 262 PESIDSWEQLERDFLNRFYSTR 283

[Close]

BLAST of Tan0006580.1 vs. NCBI nr
Match: KAA0053464.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 9.4e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 93  PESIDSWEQLERDFLNRFYSTR 114

[Close]

BLAST of Tan0006580.1 vs. NCBI nr
Match: KAA0025354.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 9.4e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 141 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 200

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 201 PESIDSWEQLERDFLNRFYSTR 222

[Close]

BLAST of Tan0006580.1 vs. NCBI nr
Match: XP_022159413.1 (uncharacterized protein LOC111025834 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 4.7e-38
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQ FDGKGNPKQH+AHFVETCENAGTRGD LVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPAGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PETI+SWEQ E+EFLNRFYST+
Sbjct: 93  PETIESWEQLEKEFLNRFYSTK 114

[Close]

BLAST of Tan0006580.1 vs. NCBI nr
Match: KAA0043322.1 (uncharacterized protein E6C27_scaffold110G002330 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 4.7e-38
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 55  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 114

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYS R
Sbjct: 115 PESIDSWEQLERDFLNRFYSIR 136

[Close]

BLAST of Tan0006580.1 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.5e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 202 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 261

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 262 PESIDSWEQLERDFLNRFYSTR 283

[Close]

BLAST of Tan0006580.1 vs. ExPASy TrEMBL
Match: A0A5A7SI89 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00380 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.5e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 141 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 200

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 201 PESIDSWEQLERDFLNRFYSTR 222

[Close]

BLAST of Tan0006580.1 vs. ExPASy TrEMBL
Match: A0A5A7UE14 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00120 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.5e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 93  PESIDSWEQLERDFLNRFYSTR 114

[Close]

BLAST of Tan0006580.1 vs. ExPASy TrEMBL
Match: A0A5A7TJ44 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002330 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.3e-38
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 55  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 114

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYS R
Sbjct: 115 PESIDSWEQLERDFLNRFYSIR 136

[Close]

BLAST of Tan0006580.1 vs. ExPASy TrEMBL
Match: A0A6J1DYQ8 (uncharacterized protein LOC111025834 OS=Momordica charantia OX=3673 GN=LOC111025834 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.3e-38
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQ FDGKGNPKQH+AHFVETCENAGTRGD LVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPAGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PETI+SWEQ E+EFLNRFYST+
Sbjct: 93  PETIESWEQLEKEFLNRFYSTK 114

The following BLAST results are available for this feature:

BLAST of Tan0006580.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0006580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047477.1	9.4e-39	92.68	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0053464.1	9.4e-39	92.68	retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]	[more]
KAA0025354.1	9.4e-39	92.68	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_022159413.1	4.7e-38	90.24	uncharacterized protein LOC111025834 [Momordica charantia]	[more]
KAA0043322.1	4.7e-38	91.46	uncharacterized protein E6C27_scaffold110G002330 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0006580.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZU9	4.5e-39	92.68	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7SI89	4.5e-39	92.68	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UE14	4.5e-39	92.68	Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa...	[more]
A0A5A7TJ44	2.3e-38	91.46	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00233...	[more]
A0A6J1DYQ8	2.3e-38	90.24	uncharacterized protein LOC111025834 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Tan0006580.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 44..80 e-value: 1.2E-5 score: 25.5

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0006580	Tan0006580	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0006580.1-cds	Tan0006580.1-cds-LG08:17289100..17289348	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0006580.1-exon	Tan0006580.1-exon-LG08:17289100..17289348	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0006580.1	Tan0006580.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity