Tan0006580 (gene) Snake gourd v1

Overview
NameTan0006580
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
LocationLG08: 17289100 .. 17289348 (-)
RNA-Seq ExpressionTan0006580
SyntenyTan0006580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTTGACGGGAAGGGCAACCCAAAGCAACACGTTGCACATTTCGTCGAAACCTGCGAAAATGCAGGGACGCGTGGTGACCTCCTGGTCAAGCAATTCGTGCGTACCTTGAAAGGAAATGCCTTTGATTGGTACACTGATTTAGAACCAGAAACGATTGACAGCTGGGAACAATTCGAGAGAGAATTCCTAAATCGCTTCTACAGTACGAGGTGA

mRNA sequence

ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTTGACGGGAAGGGCAACCCAAAGCAACACGTTGCACATTTCGTCGAAACCTGCGAAAATGCAGGGACGCGTGGTGACCTCCTGGTCAAGCAATTCGTGCGTACCTTGAAAGGAAATGCCTTTGATTGGTACACTGATTTAGAACCAGAAACGATTGACAGCTGGGAACAATTCGAGAGAGAATTCCTAAATCGCTTCTACAGTACGAGGTGA

Coding sequence (CDS)

ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTTGACGGGAAGGGCAACCCAAAGCAACACGTTGCACATTTCGTCGAAACCTGCGAAAATGCAGGGACGCGTGGTGACCTCCTGGTCAAGCAATTCGTGCGTACCTTGAAAGGAAATGCCTTTGATTGGTACACTGATTTAGAACCAGAAACGATTGACAGCTGGGAACAATTCGAGAGAGAATTCCTAAATCGCTTCTACAGTACGAGGTGA

Protein sequence

MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRFYSTR
Homology
BLAST of Tan0006580 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 9.4e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 202 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 261

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 262 PESIDSWEQLERDFLNRFYSTR 283

BLAST of Tan0006580 vs. NCBI nr
Match: KAA0053464.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 9.4e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 93  PESIDSWEQLERDFLNRFYSTR 114

BLAST of Tan0006580 vs. NCBI nr
Match: KAA0025354.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 9.4e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 141 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 200

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 201 PESIDSWEQLERDFLNRFYSTR 222

BLAST of Tan0006580 vs. NCBI nr
Match: XP_022159413.1 (uncharacterized protein LOC111025834 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 4.7e-38
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQ FDGKGNPKQH+AHFVETCENAGTRGD LVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPAGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PETI+SWEQ E+EFLNRFYST+
Sbjct: 93  PETIESWEQLEKEFLNRFYSTK 114

BLAST of Tan0006580 vs. NCBI nr
Match: KAA0043322.1 (uncharacterized protein E6C27_scaffold110G002330 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 4.7e-38
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 55  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 114

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYS R
Sbjct: 115 PESIDSWEQLERDFLNRFYSIR 136

BLAST of Tan0006580 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.5e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 202 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 261

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 262 PESIDSWEQLERDFLNRFYSTR 283

BLAST of Tan0006580 vs. ExPASy TrEMBL
Match: A0A5A7SI89 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00380 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.5e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 141 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 200

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 201 PESIDSWEQLERDFLNRFYSTR 222

BLAST of Tan0006580 vs. ExPASy TrEMBL
Match: A0A5A7UE14 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00120 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.5e-39
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYSTR
Sbjct: 93  PESIDSWEQLERDFLNRFYSTR 114

BLAST of Tan0006580 vs. ExPASy TrEMBL
Match: A0A5A7TJ44 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002330 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.3e-38
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 55  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 114

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PE+IDSWEQ ER+FLNRFYS R
Sbjct: 115 PESIDSWEQLERDFLNRFYSIR 136

BLAST of Tan0006580 vs. ExPASy TrEMBL
Match: A0A6J1DYQ8 (uncharacterized protein LOC111025834 OS=Momordica charantia OX=3673 GN=LOC111025834 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.3e-38
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQ FDGKGNPKQH+AHFVETCENAGTRGD LVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPAGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRFYSTR 83
           PETI+SWEQ E+EFLNRFYST+
Sbjct: 93  PETIESWEQLEKEFLNRFYSTK 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0047477.19.4e-3992.68uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa][more]
KAA0053464.19.4e-3992.68retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa][more]
KAA0025354.19.4e-3992.68ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
XP_022159413.14.7e-3890.24uncharacterized protein LOC111025834 [Momordica charantia][more]
KAA0043322.14.7e-3891.46uncharacterized protein E6C27_scaffold110G002330 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7TZU94.5e-3992.68Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... [more]
A0A5A7SI894.5e-3992.68Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7UE144.5e-3992.68Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa... [more]
A0A5A7TJ442.3e-3891.46Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00233... [more]
A0A6J1DYQ82.3e-3890.24uncharacterized protein LOC111025834 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 44..80
e-value: 1.2E-5
score: 25.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0006580.1Tan0006580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity