Tan0005477.1 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAAAGGGAGAAGAATGAAATTAAAGCAGGAGGGGGAGCATTTTCTCCATCTACCTGTCTTCTACTCCAATTAATTACAATTAGTTGAGAGTTAGATCCCAATTCCAATGGCACCATAAAATCAAATTCTCCAATCCTCTCTCAAAATCCAAACACCGCCATGGAAGTAGCCTCCAAGGATCCCAAATCCACCGCCGCCGCCCGCTCCCGGCGACGCCGCAACACCTGCATCGGAGTCTCCATCGCCGTCGTCGTCCTCCTCGTCGTTCTAATCGTCATTTTAGCCTTCACAGTCTTCAAAGCCAAGCGCCCTATCACCGTCATCAACTCCGTTGCCCTAGACGACCTCGATGTGTCGCTCAGCATAGCCAGAGTCGCCGTCGGCATCAACGTCACTCTCATCGTCGACATCTCTATCACGAACCCTAACAAGGTCGGATTCAGCTATTCCAACAGCACCGCGCTTCTCAATTACAGAGGCGAACTGGTCGGCGAGGCGCCGATTGTGGCCGGCCGGATCGATGCGAATCAGAGCACGCGGATGAACATCACGCTGACGATAATGGCGGATCGGCTTTTGAAGTCGTCGACGGTGCTCTCCGACATCGTCGCCGGATCGATGCCGTTGAATACGTACGCGAGAATTTCAGGTAAGGTGAGGATTTTGGGGATTTTCACTATTCATGTTGTTTCGACTACGTCCTGTGATCTCACGGTCGATATAACGGAGAGGAAAATTGGAGATCAGCAGTGTAATTATCATACGAAGATCTGATCAATTATGGTTCTTGTTTCGTAAATTATGAACAGATTTGTAGGTGGATTTAGGGCCGTTTTTACACTGTTCTAATTGATTGATTTGGTTTTGTTGCTATTTTTGAAGTGTTCTTTCCTCTGCGA AGAAAAGGGAGAAGAATGAAATTAAAGCAGGAGGGGGAGCATTTTCTCCATCTACCTGTCTTCTACTCCAATTAATTACAATTAGTTGAGAGTTAGATCCCAATTCCAATGGCACCATAAAATCAAATTCTCCAATCCTCTCTCAAAATCCAAACACCGCCATGGAAGTAGCCTCCAAGGATCCCAAATCCACCGCCGCCGCCCGCTCCCGGCGACGCCGCAACACCTGCATCGGAGTCTCCATCGCCGTCGTCGTCCTCCTCGTCGTTCTAATCGTCATTTTAGCCTTCACAGTCTTCAAAGCCAAGCGCCCTATCACCGTCATCAACTCCGTTGCCCTAGACGACCTCGATGTGTCGCTCAGCATAGCCAGAGTCGCCGTCGGCATCAACGTCACTCTCATCGTCGACATCTCTATCACGAACCCTAACAAGGTCGGATTCAGCTATTCCAACAGCACCGCGCTTCTCAATTACAGAGGCGAACTGGTCGGCGAGGCGCCGATTGTGGCCGGCCGGATCGATGCGAATCAGAGCACGCGGATGAACATCACGCTGACGATAATGGCGGATCGGCTTTTGAAGTCGTCGACGGTGCTCTCCGACATCGTCGCCGGATCGATGCCGTTGAATACGTACGCGAGAATTTCAGGTAAGGTGAGGATTTTGGGGATTTTCACTATTCATGTTGTTTCGACTACGTCCTGTGATCTCACGGTCGATATAACGGAGAGGAAAATTGGAGATCAGCAGTGTAATTATCATACGAAGATCTGATCAATTATGGTTCTTGTTTCGTAAATTATGAACAGATTTGTAGGTGGATTTAGGGCCGTTTTTACACTGTTCTAATTGATTGATTTGGTTTTGTTGCTATTTTTGAAGTGTTCTTTCCTCTGCGA ATGGAAGTAGCCTCCAAGGATCCCAAATCCACCGCCGCCGCCCGCTCCCGGCGACGCCGCAACACCTGCATCGGAGTCTCCATCGCCGTCGTCGTCCTCCTCGTCGTTCTAATCGTCATTTTAGCCTTCACAGTCTTCAAAGCCAAGCGCCCTATCACCGTCATCAACTCCGTTGCCCTAGACGACCTCGATGTGTCGCTCAGCATAGCCAGAGTCGCCGTCGGCATCAACGTCACTCTCATCGTCGACATCTCTATCACGAACCCTAACAAGGTCGGATTCAGCTATTCCAACAGCACCGCGCTTCTCAATTACAGAGGCGAACTGGTCGGCGAGGCGCCGATTGTGGCCGGCCGGATCGATGCGAATCAGAGCACGCGGATGAACATCACGCTGACGATAATGGCGGATCGGCTTTTGAAGTCGTCGACGGTGCTCTCCGACATCGTCGCCGGATCGATGCCGTTGAATACGTACGCGAGAATTTCAGGTAAGGTGAGGATTTTGGGGATTTTCACTATTCATGTTGTTTCGACTACGTCCTGTGATCTCACGGTCGATATAACGGAGAGGAAAATTGGAGATCAGCAGTGTAATTATCATACGAAGATCTGA MEVASKDPKSTAAARSRRRRNTCIGVSIAVVVLLVVLIVILAFTVFKAKRPITVINSVALDDLDVSLSIARVAVGINVTLIVDISITNPNKVGFSYSNSTALLNYRGELVGEAPIVAGRIDANQSTRMNITLTIMADRLLKSSTVLSDIVAGSMPLNTYARISGKVRILGIFTIHVVSTTSCDLTVDITERKIGDQQCNYHTKI Homology
BLAST of Tan0005477.1 vs. NCBI nr
Match: XP_038882665.1 (uncharacterized protein LOC120073854 [Benincasa hispida]) HSP 1 Score: 315.8 bits (808), Expect = 2.6e-82 Identity = 173/210 (82.38%), Postives = 186/210 (88.57%), Query Frame = 0
BLAST of Tan0005477.1 vs. NCBI nr
Match: XP_022966458.1 (uncharacterized protein LOC111466106 [Cucurbita maxima]) HSP 1 Score: 315.5 bits (807), Expect = 3.4e-82 Identity = 167/204 (81.86%), Postives = 187/204 (91.67%), Query Frame = 0
BLAST of Tan0005477.1 vs. NCBI nr
Match: XP_023518218.1 (uncharacterized protein LOC111781758 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 314.3 bits (804), Expect = 7.7e-82 Identity = 171/208 (82.21%), Postives = 190/208 (91.35%), Query Frame = 0
BLAST of Tan0005477.1 vs. NCBI nr
Match: KAG6595530.1 (Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81 Identity = 170/206 (82.52%), Postives = 190/206 (92.23%), Query Frame = 0
BLAST of Tan0005477.1 vs. NCBI nr
Match: XP_022924899.1 (uncharacterized protein LOC111432307 [Cucurbita moschata]) HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81 Identity = 170/206 (82.52%), Postives = 190/206 (92.23%), Query Frame = 0
BLAST of Tan0005477.1 vs. ExPASy TrEMBL
Match: A0A6J1HS80 (uncharacterized protein LOC111466106 OS=Cucurbita maxima OX=3661 GN=LOC111466106 PE=4 SV=1) HSP 1 Score: 315.5 bits (807), Expect = 1.7e-82 Identity = 167/204 (81.86%), Postives = 187/204 (91.67%), Query Frame = 0
BLAST of Tan0005477.1 vs. ExPASy TrEMBL
Match: A0A6J1EAI5 (uncharacterized protein LOC111432307 OS=Cucurbita moschata OX=3662 GN=LOC111432307 PE=4 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 6.3e-82 Identity = 170/206 (82.52%), Postives = 190/206 (92.23%), Query Frame = 0
BLAST of Tan0005477.1 vs. ExPASy TrEMBL
Match: A0A1S3CJB5 (uncharacterized protein LOC103501497 OS=Cucumis melo OX=3656 GN=LOC103501497 PE=4 SV=1) HSP 1 Score: 309.3 bits (791), Expect = 1.2e-80 Identity = 166/216 (76.85%), Postives = 189/216 (87.50%), Query Frame = 0
BLAST of Tan0005477.1 vs. ExPASy TrEMBL
Match: A0A0A0L094 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G337360 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 1.9e-78 Identity = 162/215 (75.35%), Postives = 186/215 (86.51%), Query Frame = 0
BLAST of Tan0005477.1 vs. ExPASy TrEMBL
Match: A0A6J1DQ35 (uncharacterized protein LOC111023175 OS=Momordica charantia OX=3673 GN=LOC111023175 PE=4 SV=1) HSP 1 Score: 297.7 bits (761), Expect = 3.6e-77 Identity = 167/209 (79.90%), Postives = 184/209 (88.04%), Query Frame = 0
BLAST of Tan0005477.1 vs. TAIR 10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family ) HSP 1 Score: 189.9 bits (481), Expect = 2.0e-48 Identity = 97/204 (47.55%), Postives = 148/204 (72.55%), Query Frame = 0
BLAST of Tan0005477.1 vs. TAIR 10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family ) HSP 1 Score: 112.8 bits (281), Expect = 3.2e-25 Identity = 70/192 (36.46%), Postives = 117/192 (60.94%), Query Frame = 0
BLAST of Tan0005477.1 vs. TAIR 10
Match: AT3G05975.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family ) HSP 1 Score: 80.1 bits (196), Expect = 2.3e-15 Identity = 53/188 (28.19%), Postives = 96/188 (51.06%), Query Frame = 0
BLAST of Tan0005477.1 vs. TAIR 10
Match: AT4G23930.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family ) HSP 1 Score: 58.2 bits (139), Expect = 9.2e-09 Identity = 46/184 (25.00%), Postives = 89/184 (48.37%), Query Frame = 0
BLAST of Tan0005477.1 vs. TAIR 10
Match: AT1G64450.1 (Glycine-rich protein family ) HSP 1 Score: 53.1 bits (126), Expect = 3.0e-07 Identity = 47/149 (31.54%), Postives = 77/149 (51.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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