Tan0004260.3 (mRNA) Snake gourd v1

Overview


Name	Tan0004260.3
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	U11/U12 small nuclear ribonucleoprotein 59 kDa protein
Location	LG10: 1853236 .. 1858893 (+)
Sequence length	1881
RNA-Seq Expression	Tan0004260.3
Synteny	Tan0004260.3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGAATCGAAATGACTTTTGGATAGAAATTGAAGACAAATTCACAGTTCATTTTTACGAGCTAAGGCTGAAGCTTCTCAAGTTGCTGAGAAAATTCGGAAGAGGTTCGGCTTGGCTTGCTTGATTGCTTCGCTTCACTTATCGTAATCTGGTTGACAGTTTTTTCTTAATTTTTTTTAGTTTTTTGATTGATCGTACAGAGACTATTGCAGTATTGCTTTCAGTAGCAATGAATTCTGTTCCGCATCAGTTTGCGGCTCAACCTCCGTTGTTTTCGATGCCGCCACCGAATCCCCCGCCATCTTGTTCATCTTTCTGGGATAACCTAAATGTGCGTGATCGTTTAAGGGATTTGCAAGACACTCTCGATCTTGCAAAGTCAATGTATGTGTTTGTTCGTAATTTGTCGCGTACTACTTCCCAGTTGTTTGTTTTCTTTTTCTGTTGTTGTGTTCCAGCTTTCAAATACTCTTGTTCTAAATTGTGATTTAAGTATATATATTGATAGGCAGAAAGAGCTTGAAATGTTGATGATAATTAAAGAACGCAAATCAACCGAGCAGAGTGTGGATAATGTGCCTAACGACACTTCTATCTGTGAGTTTTCTGAATGCTTGAAAGATAGAAGGGTTGATTTGGAGTTGCAAGAATCACGTTCGGTCGAAGCTGCAGCTGCTTTGATGAGAAGGTTAAGAGCTCAGCTTCATCCATTTAGGATGGTCGCTGATGAATCGAGTCTATGGGAAGAAAAACATCCTGCCGTTAGGTTATCTAATAAATTATCGAAGGCCAAGAGAAATAAGCAGTGGAGAAAGAGAAAGAGGAAACGCATTGCTGAATCACTTGCAAAGGTAGTATTTAGGTAATATATCTTAAATTAAAATTATCTTACATATTTACCATAATGTTACTTGTTTTTGCCTTTGTATTGTGACATCTTAGGAACGTGAAAGTTTTGACCAAGTTGATCGAGAGGCTGATGAATGGAGGGCCAGGGAGATCGCCAAGGATATTGCAAAACGCAAGGTGCTGGAATATTTACATGCATCAACTGGCATATTTTTATCTATTCTCTTACTGGAGTTAAGAATTTAATGTCTTTTTCTTTTTGGCTTCTTTTTTGGATTGGTGTAAAACAACATTCCTAAATCTCAAATGGATAAGTAGGTTCCATTGTAGTCTGATCTAGACATATGAAAACAGATGGGTTCATAGAAATATGAGAATTCAAACCTTTGGACGGTAGTTTAATAAGAAACAAGGTTTTTGAAGTTAAATGAAAGTACATACGATAGGGCCATTGGACGGTAGTTCTGTTACCAGATGGAAAAGTATTAAGTCTTTTTTCTTTCAAATTCAGAATGAGTAAGCACATTTGCAGTTATTCTTAATTTTTATGGACGGTCAGGGTTATGGACATACAAAATGGAGTTTATAGAAATATGAGAATTCAAACCTATAACTTTTCGGTAGAGACTATAATGTCTTAAGACTCTTAACTAGTTGAGTTGTGCTCATGTTGGATTGTTTTTTTACATATTGAAACTCTGCTTTTATATGTTGCCAGCGTGTTCATATAAATTCTATAGTTACTGTTAGACTATGTTGATATAGTTAAAGTTGCTCCAACCTATCAGCTTAAGCTTTTGGGTTGATTGGTAATTTAAGAGTTACCTCATCTCATAAACATTTATGTCGTTTGCTTCCCATACCATGTGCACTTCTTGAAACTGTTAGTATAATTAACAGCTATTTACATTTTTCACAGTTTTTTAATTGAAATCTTGAAGTTTTTTATTCATGTTCTGCACTTGATTACTATTGTGCATTTGCTTGTCTAGCTCTGGATTAGAGAACATTATCACAATGTATTAACAGAATAGTGTTAATTGTTGATGAGAATAAATTCATACAATGAAATTGGTGAATGGATTTCAGGTGGAGAAGATGAAAGAAATTGCAAGAATTAAAGCAAAAGAGGAGAAAAAGAAGCTAGATTCTGAGGTGAGAATCAACTGTAGTATTGGAACTATTCTTGCTGCCTTTTGTTCCCTCCTCTTATGAACTTCTAGCTAATGTTAGATATCATGTAGCTTGATCTAGCACTAATAGTGGAAAAGTTGCAAGAACTGCGCTCTATGAGGATCCAAAAATTGAAGAAACAAGGTTCGATTTCTTACTTCTTCTTCATCTGCTTTTTATAACTGCATTATTTACATGCAGATGGTTTGTTTTGCTGTTTTAGAAGATTTATTACATTCTTTTTGGTCTTTGGCAGTTGGGACTTTGTTAGGTGTATGAGTAGGATGGATAGAAGAACTAAATCTAAATCATTGTCAATTGTCTGTATCTTTATTTTCTTTTGTATAAATGGCAGTATGTCATCTAGCTAGCGAAATGTACTTAGGTTCTTGAATTGCTGAACTCACTATCAATTGCTCATGTGATTGTGATTTCATTGAAGATTGAATAAGTGAGAGAGAGAGAGTAAGGAAGCTGAAGGCAAGAAAGAGGGTGCACTATCCTTCTAGGATTGTCAAAGTTGAAACTAAATCATTTAGAATCTTCTTTGATGAAAGAATTAAGGGGGAGAGTGAAAATTGAGGAAAGAGAGATTTTTAGCTTTTATTCCTATCCAATTGGCTATACAACATGTTGGACAGGATAGGGAAGATCCTACATAGTCTCTAGAGTAATCCTACCAATAACATATTTTCCAAGCAAACGAGAATGGTTATTTTACTATTTGGATGAAGAAAACCATCAATTAGAAGTGTGCTAGAGATTTGTAAGATCGATCCAGTTAAAGGTAAATCTTGTGTTTTTGTTCCTAAAGAGGAGGTAACATGAGTTGGCTTGACTTTATGCTTTTTGTCAAATATTTCCCTAGAAGACCTTTCCAAACTAAGAAACAAAAAGAAAGAGTGTTTTTTTAGTTCAACAAATGTGAGGTTGGGTCTTCAAATGTTCAACCTAAGATATTGATGCCTTAAATCTGGAGCTATGCTCATGTTAGGCAAGATACGATGCTTTTTGATAGTGTTGGCGAAAAACACTTGAAGGATAAGGTGAAGGGCTTGGAAGGCTTGGGGATGGGAGACTGAAAAGTTGTGGAGGAGACTGTCAAGTGAAAGGAAAATGTAAAGAAGTCACCTATCATTGAGTGGAAAAGCACAGTTGTGATTACTTTCCACACAACGATTAGCTGGTCATTTTAGAAGCCTCTAGGAAAATTATTGAATTCACATGCTCCTCAATCCATTCCACCCTAAAAAAGCTGTGCTTAGACACTTAGATGAAGAAAAGGCTTAGGCCTTTGCAAATATTTTGGGTGGGTTATTGAGTTTGAGAAGTGGAATGCTGGATAACATGGTAACCTTGTAGGGAGGGTGATCAATCTGAGACGTCTACCAGTGTCATTTTGGACCCATGAAACGCTGGAGAAACTTGGGAACATTTATAGAAGATTCCTACTATCTGCTACGAAAACAAATAATTTACTGGACACATGTATAGAAATTAGAGCAATATATTGTGGTTTTATTCCAGCTGAGGTGGTTATTGAAGATTTAAAAAATGGGTAAAAAGTGAGATTCTCTTTGGTATAGGAATAATGTTGTAAATGGGAAGTTACAGGGTTGAAAGGGTATGTTTGGTTTTCTTGGACTGTATTTATTGAGTACCGTGGGATTTTGAGAGTTCCTTGGAACTATTTTCTTTCGAATTTTTCACTGTGTCAATGAAACTATTTGTTTATTTAAAAGAGAAAAAAATGATTGCTAGTGAGTTTTCATTACTTTCTGTATCATAAAATTTCCTACTTGGATCTATAGCCTAATGATAGTAGTGGTCGGTGGTATATTTGTCCAGGTCATTTTCTACCTGAGGAGGATGATAAGTTTCTAGAGAAGGTTCGAGCTGCAGTTGAGGAAGAGGAACGTCAAGCCCTTGCTGCAGCTGATACAGATGCTGCCAAGGATGCCATTGCAACTGCAGTGGTGTCTAGGAAGACTATTCCGAGTTATGATCCCGAATCAATGGATCCAAATAGTAATACAGAAAAGTGTGAAGAAAGAAATGATCAAAGAATTGCAAGTGCAGAAGATATGGTCTCTAGTATCAGCGCTAATAAGGAACCAGGGAAGCAGTTTGGAGAAGGACCAGGTTATGGAAGAGTTTATGATTATGCGGCCAATTTACCGATGGAATTCTATCATTATTATTATGGAAGTAATACTGATATGGGTACATTAATTGAGGTAATTTCAGTAATTATTTTTGTGCTCTTCACGATTTGGAAAACCTATATCTGTATTGTGGAAAGGAGTGGGTTGTAGATTATGAGTTGCAGTAGCATGTAATTTGTAGGTTTTGTATTTCTATAAGATAGTAAGTGGCCTAGTGTAACTTTATTGTTTGAATTCGTGGGATTAGCAAATTAGTAGTCTGCGATGAGCAAATTAACATAATATACATCAGCTCGGAGCTAAATCATGAGTCCAAAACTTGTAGCAAAGTGCCCCCTTGGTTTGTTCTATAGAATCTCTGCTAACATTGTAAAAAAATTACAGTGTGATAATTGTCTTGTATTAGTTCAAAATGTTTTTAGGATATTGGAAAACAATCCCTTATGCCGGTCTGTTAATTGACCTTAATACAACCATTACATAGCATCTTTGATTTTAAATCACAACTATTACCGCTTTATGTGCAGGTAAGAAGATCATGGGATGTATATATAAGACCTGGAGGAAGGTAAGATCCAATTCTTTTCTCTAGTTATTCATCTTCTCAAGTATTGGCCAAGTTTCCATAGAAAAACCAGGAAGTAACTATCACCTCGCTCATAATATTTGAACTTCCATGAGTACATCACAAATCTACAACAAACACCACTATCACTAGCAATTTACGAGTAGGGCTACAATAGCATCGAGTGTGCTCGTATCAGTAAACCATAGGACATCTCTGCAGTTTCTTCTAGTTTTTGCCTATAATTGTATATATATATTCTACTGTATCCATAGCCTCAATTGCATTCCCCTACGGGATTTCGTGCAGCCGAATACCAGGACATTGGGTTCAACCACCACCACCGTCAGATGAAATTTGGGCAGCTTATTTGGTGCGACCAAAATGAAACCAGTCAAGCCATACAAGAAGAATTGGTTTTCCAAAATGTGCTAGTACAGATTGGTATCAGTGGCAAATAGATCGATGGCGAGCTTAACATCGTTCAGACATCGGTATGTAGTTGTATGATCCTTGAGCAGTTTAAATATTTTGAAGTTGTTTGGTAAGAAGATAATCAATAAATTTCCTATTTGTTGTTTAAAATGCCGTAAAAGTCCAGCTGAGTTCATCATGTTGAGTAACGGATCGTGACAAGTTTGTGAAGATGTCTGAGAGATTTAAGAAAGCTCTAAATCCAGGCAGGAGCAGAATTCCAAATGGATTGGTAACTTGATTCTTGATTTGGCTTATTTGAGCTGGAGAAGCTTTCGTGATTATTTATTTTTGGCTTCTAGTTTTTTAGAAATGTACTTATGTAAATAGAAAATTTGGATACTGCATCTATATGGACTATGGGTTTCAAGAAGCCAATTCAATTTATTGGCTTTTGTTCTCTCTTTTAAAGAAGGCATTTCATAATTTATT

mRNA sequence

GGGGAATCGAAATGACTTTTGGATAGAAATTGAAGACAAATTCACAGTTCATTTTTACGAGCTAAGGCTGAAGCTTCTCAAGTTGCTGAGAAAATTCGGAAGAGAGACTATTGCAGTATTGCTTTCAGTAGCAATGAATTCTGTTCCGCATCAGTTTGCGGCTCAACCTCCGTTGTTTTCGATGCCGCCACCGAATCCCCCGCCATCTTGTTCATCTTTCTGGGATAACCTAAATGTGCGTGATCGTTTAAGGGATTTGCAAGACACTCTCGATCTTGCAAAGTCAATGCAGAAAGAGCTTGAAATGTTGATGATAATTAAAGAACGCAAATCAACCGAGCAGAGTGTGGATAATGTGCCTAACGACACTTCTATCTGTGAGTTTTCTGAATGCTTGAAAGATAGAAGGGTTGATTTGGAGTTGCAAGAATCACGTTCGGTCGAAGCTGCAGCTGCTTTGATGAGAAGGTTAAGAGCTCAGCTTCATCCATTTAGGATGGTCGCTGATGAATCGAGTCTATGGGAAGAAAAACATCCTGCCGTTAGGTTATCTAATAAATTATCGAAGGCCAAGAGAAATAAGCAGTGGAGAAAGAGAAAGAGGAAACGCATTGCTGAATCACTTGCAAAGGAACGTGAAAGTTTTGACCAAGTTGATCGAGAGGCTGATGAATGGAGGGCCAGGGAGATCGCCAAGGATATTGCAAAACGCAAGGTGGAGAAGATGAAAGAAATTGCAAGAATTAAAGCAAAAGAGGAGAAAAAGAAGCTAGATTCTGAGCTTGATCTAGCACTAATAGTGGAAAAGTTGCAAGAACTGCGCTCTATGAGGATCCAAAAATTGAAGAAACAAGGTCATTTTCTACCTGAGGAGGATGATAAGTTTCTAGAGAAGGTTCGAGCTGCAGTTGAGGAAGAGGAACGTCAAGCCCTTGCTGCAGCTGATACAGATGCTGCCAAGGATGCCATTGCAACTGCAGTGGTGTCTAGGAAGACTATTCCGAGTTATGATCCCGAATCAATGGATCCAAATAGTAATACAGAAAAGTGTGAAGAAAGAAATGATCAAAGAATTGCAAGTGCAGAAGATATGGTCTCTAGTATCAGCGCTAATAAGGAACCAGGGAAGCAGTTTGGAGAAGGACCAGGTTATGGAAGAGTTTATGATTATGCGGCCAATTTACCGATGGAATTCTATCATTATTATTATGGAAGTAATACTGATATGGGTACATTAATTGAGGTAAGAAGATCATGGGATGTATATATAAGACCTGGAGGAAGCCGAATACCAGGACATTGGGTTCAACCACCACCACCGTCAGATGAAATTTGGGCAGCTTATTTGGTGCGACCAAAATGAAACCAGTCAAGCCATACAAGAAGAATTGGTTTTCCAAAATGTGCTAGTACAGATTGGTATCAGTGGCAAATAGATCGATGGCGAGCTTAACATCGTTCAGACATCGGTATGTAGTTGTATGATCCTTGAGCAGTTTAAATATTTTGAAGTTGTTTGGTAAGAAGATAATCAATAAATTTCCTATTTGTTGTTTAAAATGCCGTAAAAGTCCAGCTGAGTTCATCATGTTGAGTAACGGATCGTGACAAGTTTGTGAAGATGTCTGAGAGATTTAAGAAAGCTCTAAATCCAGGCAGGAGCAGAATTCCAAATGGATTGGTAACTTGATTCTTGATTTGGCTTATTTGAGCTGGAGAAGCTTTCGTGATTATTTATTTTTGGCTTCTAGTTTTTTAGAAATGTACTTATGTAAATAGAAAATTTGGATACTGCATCTATATGGACTATGGGTTTCAAGAAGCCAATTCAATTTATTGGCTTTTGTTCTCTCTTTTAAAGAAGGCATTTCATAATTTATT

Coding sequence (CDS)

ATGAATTCTGTTCCGCATCAGTTTGCGGCTCAACCTCCGTTGTTTTCGATGCCGCCACCGAATCCCCCGCCATCTTGTTCATCTTTCTGGGATAACCTAAATGTGCGTGATCGTTTAAGGGATTTGCAAGACACTCTCGATCTTGCAAAGTCAATGCAGAAAGAGCTTGAAATGTTGATGATAATTAAAGAACGCAAATCAACCGAGCAGAGTGTGGATAATGTGCCTAACGACACTTCTATCTGTGAGTTTTCTGAATGCTTGAAAGATAGAAGGGTTGATTTGGAGTTGCAAGAATCACGTTCGGTCGAAGCTGCAGCTGCTTTGATGAGAAGGTTAAGAGCTCAGCTTCATCCATTTAGGATGGTCGCTGATGAATCGAGTCTATGGGAAGAAAAACATCCTGCCGTTAGGTTATCTAATAAATTATCGAAGGCCAAGAGAAATAAGCAGTGGAGAAAGAGAAAGAGGAAACGCATTGCTGAATCACTTGCAAAGGAACGTGAAAGTTTTGACCAAGTTGATCGAGAGGCTGATGAATGGAGGGCCAGGGAGATCGCCAAGGATATTGCAAAACGCAAGGTGGAGAAGATGAAAGAAATTGCAAGAATTAAAGCAAAAGAGGAGAAAAAGAAGCTAGATTCTGAGCTTGATCTAGCACTAATAGTGGAAAAGTTGCAAGAACTGCGCTCTATGAGGATCCAAAAATTGAAGAAACAAGGTCATTTTCTACCTGAGGAGGATGATAAGTTTCTAGAGAAGGTTCGAGCTGCAGTTGAGGAAGAGGAACGTCAAGCCCTTGCTGCAGCTGATACAGATGCTGCCAAGGATGCCATTGCAACTGCAGTGGTGTCTAGGAAGACTATTCCGAGTTATGATCCCGAATCAATGGATCCAAATAGTAATACAGAAAAGTGTGAAGAAAGAAATGATCAAAGAATTGCAAGTGCAGAAGATATGGTCTCTAGTATCAGCGCTAATAAGGAACCAGGGAAGCAGTTTGGAGAAGGACCAGGTTATGGAAGAGTTTATGATTATGCGGCCAATTTACCGATGGAATTCTATCATTATTATTATGGAAGTAATACTGATATGGGTACATTAATTGAGGTAAGAAGATCATGGGATGTATATATAAGACCTGGAGGAAGCCGAATACCAGGACATTGGGTTCAACCACCACCACCGTCAGATGAAATTTGGGCAGCTTATTTGGTGCGACCAAAATGA

Protein sequence

MNSVPHQFAAQPPLFSMPPPNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLMIIKERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPFRMVADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADEWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAVVSRKTIPSYDPESMDPNSNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHYYYGSNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLVRPK

Homology

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BLAST of Tan0004260.3 vs. ExPASy Swiss-Prot
Match: Q8VYD3 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP59 PE=2 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 3.9e-96
Identity = 215/409 (52.57%), Postives = 266/409 (65.04%), Query Frame = 0


Query: 5   PHQFAAQPPLFSMPP--PNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLMII 64
           P  F    P F   P  P  PP C  FW+  N+ D+L+ LQDTL+LAKSM+KELE L +I
Sbjct: 3   PANFQPPNPPFHWAPMLPPDPPRCGMFWNTKNITDQLKQLQDTLNLAKSMEKELEALKMI 62

Query: 65  KERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPFRM 124
           K+ K    SV+N   D+ +    E L+ R++DL  QE  SV+AA +LM  LRAQL PFR 
Sbjct: 63  KDAKG---SVENAVQDSGV----EYLEARKMDLGQQEMLSVDAANSLMSTLRAQLEPFRF 122

Query: 125 VADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADEWR 184
           V DE+S WEEK  AVRL+ K+ K+ RNK W+KRKR+  AE  AKE E F+Q DREADEWR
Sbjct: 123 VVDENSPWEEKSAAVRLTCKMKKSIRNKLWKKRKRRCAAEMRAKEPERFEQADREADEWR 182

Query: 185 AREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQGH 244
            +E+AKD+A RKV++MK I +IKAK E+K+L+ EL+LALIVE++QELRS+RI+KLKKQGH
Sbjct: 183 EKEMAKDMANRKVDEMKAIEKIKAKRERKRLEPELELALIVEEMQELRSLRIEKLKKQGH 242

Query: 245 FLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIA-----TAVVSRKTIPSYDPESM 304
           FLPEEDDKF E VRAAVE+EE QA +  +T+  +  IA     T   S KT    D +S 
Sbjct: 243 FLPEEDDKFFESVRAAVEQEENQAQSLINTETEEHVIASEENTTLTTSNKTNNDTDKDS- 302

Query: 305 DPNSNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHY 364
             N+N   CE     R   A D                         D  +NLP+E YHY
Sbjct: 303 --NTNAASCE-----RTMKAPD----------------------NGCDNISNLPVEVYHY 362

Query: 365 YYGSNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLV 407
           YYGSN DMG LIE+RR WD Y+  GGSRIPGHWVQP PP++EIWA+ LV
Sbjct: 363 YYGSNIDMGRLIEIRREWDAYLSAGGSRIPGHWVQPSPPANEIWASCLV 374

[Close]

BLAST of Tan0004260.3 vs. NCBI nr
Match: XP_022924846.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucurbita moschata])

HSP 1 Score: 661.8 bits (1706), Expect = 3.9e-186
Identity = 354/409 (86.55%), Postives = 375/409 (91.69%), Query Frame = 0


Query: 1   MNSVPHQFAAQPPLFSMPPPNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLM 60
           MN VPHQFAAQPP F MPPPN PPSCSSFWDNLNVRDRLRDLQD+LDLAKSMQKELEML 
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPSCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60

Query: 61  IIKERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPF 120
           IIKE KS+EQS DN+P D+SI EFS+ L+D+R+ LELQESRSVE AAALM+RLR QLHPF
Sbjct: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120

Query: 121 RMVADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180
           R+  DESSL E    AV+LS KLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE
Sbjct: 121 RIDTDESSLRE----AVKLSTKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQ 240
           WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSEL+LALIVEKLQELRS+RIQKLKKQ
Sbjct: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ 240

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAVVSRKTIPSYDPESMDPN 300
           GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATA VSRKTIPSY+ ES DP+
Sbjct: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNLESRDPD 300

Query: 301 SNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHYYYG 360
           S TE+ EERNDQR AS +D VS+IS NKEPGKQFGE  G+GR YDYAANLPMEFYHYYYG
Sbjct: 301 SATERSEERNDQRTASVDDKVSNISTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYG 360

Query: 361 SNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLVRPK 410
           SNTDMGTLIEVRRSWD +IRPGGSRIPGHWVQPPPP+DEIWAAYLVRPK
Sbjct: 361 SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 405

[Close]

BLAST of Tan0004260.3 vs. NCBI nr
Match: KAG7019034.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 661.4 bits (1705), Expect = 5.1e-186
Identity = 353/409 (86.31%), Postives = 374/409 (91.44%), Query Frame = 0


Query: 1   MNSVPHQFAAQPPLFSMPPPNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLM 60
           MN VPHQFAAQPP F MPPPN PP CSSFWDNLNVRDRLRDLQD+LDLAKSMQKELEML 
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPFCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60

Query: 61  IIKERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPF 120
           IIKE KS+EQS DN+P D+SI EFS+ L+D+R+ LELQESRSVE AAALM+RLR QLHPF
Sbjct: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120

Query: 121 RMVADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180
           R+  DESSL E    AV+LS KLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE
Sbjct: 121 RIDTDESSLRE----AVKLSTKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQ 240
           WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSEL+LALIVEKLQELRS+RIQKLKKQ
Sbjct: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ 240

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAVVSRKTIPSYDPESMDPN 300
           GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATA VSRKTIPSY+PES DP+
Sbjct: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPD 300

Query: 301 SNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHYYYG 360
           S TE+ EERNDQR AS +D VS+ S NKEPGKQFGE  G+GR YDYAANLPMEFYHYYYG
Sbjct: 301 SATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYG 360

Query: 361 SNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLVRPK 410
           SNTDMGTLIEVRRSWD +IRPGGSRIPGHWVQPPPP+DEIWAAYLVRPK
Sbjct: 361 SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 405

[Close]

BLAST of Tan0004260.3 vs. NCBI nr
Match: KAG6582639.1 (Protein ABIL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 660.6 bits (1703), Expect = 8.7e-186
Identity = 353/409 (86.31%), Postives = 374/409 (91.44%), Query Frame = 0


Query: 1   MNSVPHQFAAQPPLFSMPPPNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLM 60
           MN VPHQFAAQPP F MPPPN P SCSSFWDNLNVRDRLRDLQD+LDLAKSMQKELEML 
Sbjct: 306 MNPVPHQFAAQPPRFLMPPPNQPASCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 365

Query: 61  IIKERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPF 120
           IIKE KS+EQS DN+P D+SI EFS+ L+D+R+ LELQESRSVE AAALM+RLR QLHPF
Sbjct: 366 IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 425

Query: 121 RMVADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180
           R+  DESSL E    AV+LS KLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE
Sbjct: 426 RIDTDESSLRE----AVKLSTKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 485

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQ 240
           WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSEL+LALIVEKLQELRS+RIQKLKKQ
Sbjct: 486 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ 545

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAVVSRKTIPSYDPESMDPN 300
           GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATA VSRKTIPSY+PES DP+
Sbjct: 546 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPD 605

Query: 301 SNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHYYYG 360
           S TE+ EERNDQR AS +D VS+ S NKEPGKQFGE  G+GR YDYAANLPMEFYHYYYG
Sbjct: 606 SATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYG 665

Query: 361 SNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLVRPK 410
           SNTDMGTLIEVRRSWD +IRPGGSRIPGHWVQPPPP+DEIWAAYLVRPK
Sbjct: 666 SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 710

[Close]

BLAST of Tan0004260.3 vs. NCBI nr
Match: XP_023526863.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 659.8 bits (1701), Expect = 1.5e-185
Identity = 352/409 (86.06%), Postives = 374/409 (91.44%), Query Frame = 0


Query: 1   MNSVPHQFAAQPPLFSMPPPNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLM 60
           MN VPHQFAAQPP F MPPPN PPSCSSFWDNLNVRDRLRDLQD+LDLAKSMQKELE+L 
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPSCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEVLT 60

Query: 61  IIKERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPF 120
           IIKE KS+EQS DN+P D+SI EFS+ L+D+R+ LELQESRSVE AAALM+RLR QLHP 
Sbjct: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPL 120

Query: 121 RMVADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180
           R+  DESSL E    AV+LS KLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE
Sbjct: 121 RIDTDESSLRE----AVKLSTKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQ 240
           WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSEL+LALIVEKLQELRS+RIQKLKKQ
Sbjct: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ 240

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAVVSRKTIPSYDPESMDPN 300
           GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATA VSRKTIPSY+PES DP+
Sbjct: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPD 300

Query: 301 SNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHYYYG 360
           S TE+ EERNDQR AS +D VS+ S NKEPGKQFGE  G+GR YDYAANLPMEFYHYYYG
Sbjct: 301 SATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYG 360

Query: 361 SNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLVRPK 410
           SNTDMGTLIEVRRSWD +IRPGGSRIPGHWVQPPPP+DEIWAAYLVRPK
Sbjct: 361 SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 405

[Close]

BLAST of Tan0004260.3 vs. NCBI nr
Match: XP_022147279.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein [Momordica charantia] >XP_022147280.1 U11/U12 small nuclear ribonucleoprotein 59 kDa protein [Momordica charantia])

HSP 1 Score: 658.3 bits (1697), Expect = 4.3e-185
Identity = 351/409 (85.82%), Postives = 376/409 (91.93%), Query Frame = 0


Query: 1   MNSVPHQFAAQPPLFSMPPPNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLM 60
           MNSVPHQFAAQPP FSM    PPPSC+SFW+NLNVRDRLRDLQ+TLDLAKSMQKELEMLM
Sbjct: 1   MNSVPHQFAAQPPWFSM----PPPSCASFWNNLNVRDRLRDLQETLDLAKSMQKELEMLM 60

Query: 61  IIKERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPF 120
           I K+ KS+EQS  +VPND+   EFSE L+DRR++LELQESRSVEA  ALMR+LRAQLHPF
Sbjct: 61  IFKDGKSSEQSAVSVPNDS---EFSEYLEDRRINLELQESRSVEAVVALMRKLRAQLHPF 120

Query: 121 RMVADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180
           RMV DESS W+EK+ AVRLS KL KAKRNK WRKRKRKRIAESLAKER SFD VDREADE
Sbjct: 121 RMVYDESSPWQEKNAAVRLSTKLLKAKRNKLWRKRKRKRIAESLAKERGSFDLVDREADE 180

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQ 240
           WRAREIAKDIAKRKVEKMKEIAR+KAKEEKK++DSEL+LALIVEKLQELRS+RIQKLKKQ
Sbjct: 181 WRAREIAKDIAKRKVEKMKEIARVKAKEEKKRIDSELELALIVEKLQELRSIRIQKLKKQ 240

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAVVSRKTIPSYDPESMDPN 300
           GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAA+DAIATA VSRKTIPSY+PES DPN
Sbjct: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAARDAIATAEVSRKTIPSYNPESKDPN 300

Query: 301 SNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHYYYG 360
           SN E+ EERNDQR ASA+D VS+IS +KEPGKQFGEG G GRVYDYAANLPMEFYHYYYG
Sbjct: 301 SNAERLEERNDQRTASADDKVSNISTDKEPGKQFGEGQGCGRVYDYAANLPMEFYHYYYG 360

Query: 361 SNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLVRPK 410
           SNTDMGTLIEVRRSWD YIRPGGSRIPGHWVQPPPP+DEIWAAYLVRPK
Sbjct: 361 SNTDMGTLIEVRRSWDAYIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 402

[Close]

BLAST of Tan0004260.3 vs. ExPASy TrEMBL
Match: A0A6J1EAK8 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432209 PE=4 SV=1)

HSP 1 Score: 661.8 bits (1706), Expect = 1.9e-186
Identity = 354/409 (86.55%), Postives = 375/409 (91.69%), Query Frame = 0


Query: 1   MNSVPHQFAAQPPLFSMPPPNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLM 60
           MN VPHQFAAQPP F MPPPN PPSCSSFWDNLNVRDRLRDLQD+LDLAKSMQKELEML 
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPSCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60

Query: 61  IIKERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPF 120
           IIKE KS+EQS DN+P D+SI EFS+ L+D+R+ LELQESRSVE AAALM+RLR QLHPF
Sbjct: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120

Query: 121 RMVADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180
           R+  DESSL E    AV+LS KLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE
Sbjct: 121 RIDTDESSLRE----AVKLSTKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQ 240
           WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSEL+LALIVEKLQELRS+RIQKLKKQ
Sbjct: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ 240

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAVVSRKTIPSYDPESMDPN 300
           GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATA VSRKTIPSY+ ES DP+
Sbjct: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNLESRDPD 300

Query: 301 SNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHYYYG 360
           S TE+ EERNDQR AS +D VS+IS NKEPGKQFGE  G+GR YDYAANLPMEFYHYYYG
Sbjct: 301 SATERSEERNDQRTASVDDKVSNISTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYG 360

Query: 361 SNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLVRPK 410
           SNTDMGTLIEVRRSWD +IRPGGSRIPGHWVQPPPP+DEIWAAYLVRPK
Sbjct: 361 SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 405

[Close]

BLAST of Tan0004260.3 vs. ExPASy TrEMBL
Match: A0A6J1CZQ3 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein OS=Momordica charantia OX=3673 GN=LOC111016273 PE=4 SV=1)

HSP 1 Score: 658.3 bits (1697), Expect = 2.1e-185
Identity = 351/409 (85.82%), Postives = 376/409 (91.93%), Query Frame = 0


Query: 1   MNSVPHQFAAQPPLFSMPPPNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLM 60
           MNSVPHQFAAQPP FSM    PPPSC+SFW+NLNVRDRLRDLQ+TLDLAKSMQKELEMLM
Sbjct: 1   MNSVPHQFAAQPPWFSM----PPPSCASFWNNLNVRDRLRDLQETLDLAKSMQKELEMLM 60

Query: 61  IIKERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPF 120
           I K+ KS+EQS  +VPND+   EFSE L+DRR++LELQESRSVEA  ALMR+LRAQLHPF
Sbjct: 61  IFKDGKSSEQSAVSVPNDS---EFSEYLEDRRINLELQESRSVEAVVALMRKLRAQLHPF 120

Query: 121 RMVADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180
           RMV DESS W+EK+ AVRLS KL KAKRNK WRKRKRKRIAESLAKER SFD VDREADE
Sbjct: 121 RMVYDESSPWQEKNAAVRLSTKLLKAKRNKLWRKRKRKRIAESLAKERGSFDLVDREADE 180

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQ 240
           WRAREIAKDIAKRKVEKMKEIAR+KAKEEKK++DSEL+LALIVEKLQELRS+RIQKLKKQ
Sbjct: 181 WRAREIAKDIAKRKVEKMKEIARVKAKEEKKRIDSELELALIVEKLQELRSIRIQKLKKQ 240

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAVVSRKTIPSYDPESMDPN 300
           GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAA+DAIATA VSRKTIPSY+PES DPN
Sbjct: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAARDAIATAEVSRKTIPSYNPESKDPN 300

Query: 301 SNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHYYYG 360
           SN E+ EERNDQR ASA+D VS+IS +KEPGKQFGEG G GRVYDYAANLPMEFYHYYYG
Sbjct: 301 SNAERLEERNDQRTASADDKVSNISTDKEPGKQFGEGQGCGRVYDYAANLPMEFYHYYYG 360

Query: 361 SNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLVRPK 410
           SNTDMGTLIEVRRSWD YIRPGGSRIPGHWVQPPPP+DEIWAAYLVRPK
Sbjct: 361 SNTDMGTLIEVRRSWDAYIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 402

[Close]

BLAST of Tan0004260.3 vs. ExPASy TrEMBL
Match: A0A6J1IWF2 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479855 PE=4 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 2.7e-185
Identity = 352/409 (86.06%), Postives = 373/409 (91.20%), Query Frame = 0


Query: 1   MNSVPHQFAAQPPLFSMPPPNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLM 60
           MN VPHQFAAQPP F MPPPN PPSCSSFWDNLNVRDRLRDLQD+LDLAKSMQKELEML 
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPSCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60

Query: 61  IIKERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPF 120
           IIKE KS+EQS DN+P D+SI EFS+ L+D+R+ LELQESRSVE AAALM+RLR QLHPF
Sbjct: 61  IIKESKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120

Query: 121 RMVADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180
           R+  DESSL E    AV+LS KLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE
Sbjct: 121 RIDTDESSLRE----AVKLSTKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADE 180

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQ 240
           WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSEL+LALIVEKLQELRS+RIQKLKKQ
Sbjct: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ 240

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAVVSRKTIPSYDPESMDPN 300
           GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATA VSRKTI SY+PES DP+
Sbjct: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTISSYNPESRDPD 300

Query: 301 SNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHYYYG 360
           S TE+ EERNDQ  AS +D VS+ S NKEPGKQFGE  G+GR YDYAANLPMEFYHYYYG
Sbjct: 301 SATERPEERNDQTTASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYG 360

Query: 361 SNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLVRPK 410
           SNTDMGTLIEVRRSWD +IRPGGSRIPGHWVQPPPP+DEIWAAYLVRPK
Sbjct: 361 SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 405

[Close]

BLAST of Tan0004260.3 vs. ExPASy TrEMBL
Match: A0A6J1EAC6 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432209 PE=4 SV=1)

HSP 1 Score: 654.1 bits (1686), Expect = 4.0e-184
Identity = 353/414 (85.27%), Postives = 375/414 (90.58%), Query Frame = 0


Query: 1   MNSVPHQFAAQPPLFSMPPPNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSM-----QKE 60
           MN VPHQFAAQPP F MPPPN PPSCSSFWDNLNVRDRLRDLQD+LDLAKS+     QKE
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPSCSSFWDNLNVRDRLRDLQDSLDLAKSIINIDRQKE 60

Query: 61  LEMLMIIKERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRA 120
           LEML IIKE KS+EQS DN+P D+SI EFS+ L+D+R+ LELQESRSVE AAALM+RLR 
Sbjct: 61  LEMLTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLRE 120

Query: 121 QLHPFRMVADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVD 180
           QLHPFR+  DESSL E    AV+LS KLSKAKRNKQWRKRKRKRIAESLAKERESFDQVD
Sbjct: 121 QLHPFRIDTDESSLRE----AVKLSTKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVD 180

Query: 181 READEWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQ 240
           READEWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSEL+LALIVEKLQELRS+RIQ
Sbjct: 181 READEWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQ 240

Query: 241 KLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAVVSRKTIPSYDPE 300
           KLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATA VSRKTIPSY+ E
Sbjct: 241 KLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNLE 300

Query: 301 SMDPNSNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFY 360
           S DP+S TE+ EERNDQR AS +D VS+IS NKEPGKQFGE  G+GR YDYAANLPMEFY
Sbjct: 301 SRDPDSATERSEERNDQRTASVDDKVSNISTNKEPGKQFGEVQGFGRAYDYAANLPMEFY 360

Query: 361 HYYYGSNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLVRPK 410
           HYYYGSNTDMGTLIEVRRSWD +IRPGGSRIPGHWVQPPPP+DEIWAAYLVRPK
Sbjct: 361 HYYYGSNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 410

[Close]

BLAST of Tan0004260.3 vs. ExPASy TrEMBL
Match: A0A6J1IZE8 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479855 PE=4 SV=1)

HSP 1 Score: 650.2 bits (1676), Expect = 5.7e-183
Identity = 351/414 (84.78%), Postives = 373/414 (90.10%), Query Frame = 0


Query: 1   MNSVPHQFAAQPPLFSMPPPNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSM-----QKE 60
           MN VPHQFAAQPP F MPPPN PPSCSSFWDNLNVRDRLRDLQD+LDLAKS+     QKE
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPSCSSFWDNLNVRDRLRDLQDSLDLAKSIINIDRQKE 60

Query: 61  LEMLMIIKERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRA 120
           LEML IIKE KS+EQS DN+P D+SI EFS+ L+D+R+ LELQESRSVE AAALM+RLR 
Sbjct: 61  LEMLTIIKESKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLRE 120

Query: 121 QLHPFRMVADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVD 180
           QLHPFR+  DESSL E    AV+LS KLSKAKRNKQWRKRKRKRIAESLAKERESFDQVD
Sbjct: 121 QLHPFRIDTDESSLRE----AVKLSTKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVD 180

Query: 181 READEWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQ 240
           READEWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSEL+LALIVEKLQELRS+RIQ
Sbjct: 181 READEWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQ 240

Query: 241 KLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAVVSRKTIPSYDPE 300
           KLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATA VSRKTI SY+PE
Sbjct: 241 KLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTISSYNPE 300

Query: 301 SMDPNSNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFY 360
           S DP+S TE+ EERNDQ  AS +D VS+ S NKEPGKQFGE  G+GR YDYAANLPMEFY
Sbjct: 301 SRDPDSATERPEERNDQTTASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFY 360

Query: 361 HYYYGSNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLVRPK 410
           HYYYGSNTDMGTLIEVRRSWD +IRPGGSRIPGHWVQPPPP+DEIWAAYLVRPK
Sbjct: 361 HYYYGSNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 410

[Close]

BLAST of Tan0004260.3 vs. TAIR 10
Match: AT2G46200.1 (unknown protein; Has 2968 Blast hits to 2381 proteins in 310 species: Archae - 16; Bacteria - 188; Metazoa - 1070; Fungi - 227; Plants - 145; Viruses - 4; Other Eukaryotes - 1318 (source: NCBI BLink). )

HSP 1 Score: 353.2 bits (905), Expect = 2.8e-97
Identity = 215/409 (52.57%), Postives = 266/409 (65.04%), Query Frame = 0


Query: 5   PHQFAAQPPLFSMPP--PNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLMII 64
           P  F    P F   P  P  PP C  FW+  N+ D+L+ LQDTL+LAKSM+KELE L +I
Sbjct: 3   PANFQPPNPPFHWAPMLPPDPPRCGMFWNTKNITDQLKQLQDTLNLAKSMEKELEALKMI 62

Query: 65  KERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPFRM 124
           K+ K    SV+N   D+ +    E L+ R++DL  QE  SV+AA +LM  LRAQL PFR 
Sbjct: 63  KDAKG---SVENAVQDSGV----EYLEARKMDLGQQEMLSVDAANSLMSTLRAQLEPFRF 122

Query: 125 VADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADEWR 184
           V DE+S WEEK  AVRL+ K+ K+ RNK W+KRKR+  AE  AKE E F+Q DREADEWR
Sbjct: 123 VVDENSPWEEKSAAVRLTCKMKKSIRNKLWKKRKRRCAAEMRAKEPERFEQADREADEWR 182

Query: 185 AREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQGH 244
            +E+AKD+A RKV++MK I +IKAK E+K+L+ EL+LALIVE++QELRS+RI+KLKKQGH
Sbjct: 183 EKEMAKDMANRKVDEMKAIEKIKAKRERKRLEPELELALIVEEMQELRSLRIEKLKKQGH 242

Query: 245 FLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIA-----TAVVSRKTIPSYDPESM 304
           FLPEEDDKF E VRAAVE+EE QA +  +T+  +  IA     T   S KT    D +S 
Sbjct: 243 FLPEEDDKFFESVRAAVEQEENQAQSLINTETEEHVIASEENTTLTTSNKTNNDTDKDS- 302

Query: 305 DPNSNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHY 364
             N+N   CE     R   A D                         D  +NLP+E YHY
Sbjct: 303 --NTNAASCE-----RTMKAPD----------------------NGCDNISNLPVEVYHY 362

Query: 365 YYGSNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLV 407
           YYGSN DMG LIE+RR WD Y+  GGSRIPGHWVQP PP++EIWA+ LV
Sbjct: 363 YYGSNIDMGRLIEIRREWDAYLSAGGSRIPGHWVQPSPPANEIWASCLV 374

[Close]

BLAST of Tan0004260.3 vs. TAIR 10
Match: AT2G46200.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 353.2 bits (905), Expect = 2.8e-97
Identity = 215/409 (52.57%), Postives = 266/409 (65.04%), Query Frame = 0


Query: 5   PHQFAAQPPLFSMPP--PNPPPSCSSFWDNLNVRDRLRDLQDTLDLAKSMQKELEMLMII 64
           P  F    P F   P  P  PP C  FW+  N+ D+L+ LQDTL+LAKSM+KELE L +I
Sbjct: 3   PANFQPPNPPFHWAPMLPPDPPRCGMFWNTKNITDQLKQLQDTLNLAKSMEKELEALKMI 62

Query: 65  KERKSTEQSVDNVPNDTSICEFSECLKDRRVDLELQESRSVEAAAALMRRLRAQLHPFRM 124
           K+ K    SV+N   D+ +    E L+ R++DL  QE  SV+AA +LM  LRAQL PFR 
Sbjct: 63  KDAKG---SVENAVQDSGV----EYLEARKMDLGQQEMLSVDAANSLMSTLRAQLEPFRF 122

Query: 125 VADESSLWEEKHPAVRLSNKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADEWR 184
           V DE+S WEEK  AVRL+ K+ K+ RNK W+KRKR+  AE  AKE E F+Q DREADEWR
Sbjct: 123 VVDENSPWEEKSAAVRLTCKMKKSIRNKLWKKRKRRCAAEMRAKEPERFEQADREADEWR 182

Query: 185 AREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELDLALIVEKLQELRSMRIQKLKKQGH 244
            +E+AKD+A RKV++MK I +IKAK E+K+L+ EL+LALIVE++QELRS+RI+KLKKQGH
Sbjct: 183 EKEMAKDMANRKVDEMKAIEKIKAKRERKRLEPELELALIVEEMQELRSLRIEKLKKQGH 242

Query: 245 FLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIA-----TAVVSRKTIPSYDPESM 304
           FLPEEDDKF E VRAAVE+EE QA +  +T+  +  IA     T   S KT    D +S 
Sbjct: 243 FLPEEDDKFFESVRAAVEQEENQAQSLINTETEEHVIASEENTTLTTSNKTNNDTDKDS- 302

Query: 305 DPNSNTEKCEERNDQRIASAEDMVSSISANKEPGKQFGEGPGYGRVYDYAANLPMEFYHY 364
             N+N   CE     R   A D                         D  +NLP+E YHY
Sbjct: 303 --NTNAASCE-----RTMKAPD----------------------NGCDNISNLPVEVYHY 362

Query: 365 YYGSNTDMGTLIEVRRSWDVYIRPGGSRIPGHWVQPPPPSDEIWAAYLV 407
           YYGSN DMG LIE+RR WD Y+  GGSRIPGHWVQP PP++EIWA+ LV
Sbjct: 363 YYGSNIDMGRLIEIRREWDAYLSAGGSRIPGHWVQPSPPANEIWASCLV 374

The following BLAST results are available for this feature:

BLAST of Tan0004260.3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYD3	3.9e-96	52.57	U11/U12 small nuclear ribonucleoprotein 59 kDa protein OS=Arabidopsis thaliana O...	[more]

BLAST of Tan0004260.3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924846.1	3.9e-186	86.55	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucurbita mos...	[more]
KAG7019034.1	5.1e-186	86.31	U11/U12 small nuclear ribonucleoprotein 59 kDa protein [Cucurbita argyrosperma s...	[more]
KAG6582639.1	8.7e-186	86.31	Protein ABIL1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023526863.1	1.5e-185	86.06	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucurbita pep...	[more]
XP_022147279.1	4.3e-185	85.82	U11/U12 small nuclear ribonucleoprotein 59 kDa protein [Momordica charantia] >XP...	[more]

BLAST of Tan0004260.3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAK8	1.9e-186	86.55	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 OS=Cucurbita m...	[more]
A0A6J1CZQ3	2.1e-185	85.82	U11/U12 small nuclear ribonucleoprotein 59 kDa protein OS=Momordica charantia OX...	[more]
A0A6J1IWF2	2.7e-185	86.06	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 OS=Cucurbita m...	[more]
A0A6J1EAC6	4.0e-184	85.27	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucurbita m...	[more]
A0A6J1IZE8	5.7e-183	84.78	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucurbita m...	[more]

BLAST of Tan0004260.3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46200.1	2.8e-97	52.57	unknown protein; Has 2968 Blast hits to 2381 proteins in 310 species: Archae - 1...	[more]
AT2G46200.2	2.8e-97	52.57	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 252..272
None	No IPR available	COILS	Coil	Coil	coord: 39..59
None	No IPR available	COILS	Coil	Coil	coord: 164..184
None	No IPR available	COILS	Coil	Coil	coord: 192..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR48190	FAMILY NOT NAMED	coord: 10..409
IPR031974	Programmed cell death protein 7	PFAM	PF16021	PDCD7	coord: 131..405 e-value: 1.0E-18 score: 67.6

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0004260	Tan0004260	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0004260.3-five_prime_utr	Tan0004260.3-five_prime_utr-LG10:1853236..1853339	five_prime_UTR
Tan0004260.3-five_prime_utr	Tan0004260.3-five_prime_utr-LG10:1853436..1853464	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0004260.3-exon	Tan0004260.3-exon-LG10:1853236..1853339	exon
Tan0004260.3-exon	Tan0004260.3-exon-LG10:1853436..1853619	exon
Tan0004260.3-exon	Tan0004260.3-exon-LG10:1853744..1854086	exon
Tan0004260.3-exon	Tan0004260.3-exon-LG10:1854178..1854261	exon
Tan0004260.3-exon	Tan0004260.3-exon-LG10:1855174..1855239	exon
Tan0004260.3-exon	Tan0004260.3-exon-LG10:1855329..1855401	exon
Tan0004260.3-exon	Tan0004260.3-exon-LG10:1857106..1857494	exon
Tan0004260.3-exon	Tan0004260.3-exon-LG10:1857950..1857990	exon
Tan0004260.3-exon	Tan0004260.3-exon-LG10:1858297..1858893	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0004260.3-cds	Tan0004260.3-cds-LG10:1853465..1853619	CDS
Tan0004260.3-cds	Tan0004260.3-cds-LG10:1853744..1854086	CDS
Tan0004260.3-cds	Tan0004260.3-cds-LG10:1854178..1854261	CDS
Tan0004260.3-cds	Tan0004260.3-cds-LG10:1855174..1855239	CDS
Tan0004260.3-cds	Tan0004260.3-cds-LG10:1855329..1855401	CDS
Tan0004260.3-cds	Tan0004260.3-cds-LG10:1857106..1857494	CDS
Tan0004260.3-cds	Tan0004260.3-cds-LG10:1857950..1857990	CDS
Tan0004260.3-cds	Tan0004260.3-cds-LG10:1858297..1858375	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0004260.3-three_prime_utr	Tan0004260.3-three_prime_utr-LG10:1858376..1858893	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0004260.3	Tan0004260.3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane