Tan0003945.1 (mRNA) Snake gourd v1

Overview


Name	Tan0003945.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG01: 101059933 .. 101061778 (-)
Sequence length	300
RNA-Seq Expression	Tan0003945.1
Synteny	Tan0003945.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAATGCTCGGATCTTCCTCAATGTACGGTCATCGACGCCTTTGCAATGCCATACGGCTTACGGTACTACTCTTCTTCTTTATGTACATTGTCTTAATCGCTTCTCGATCGCTGTAACTATTGACTCGATGTGATTAACATTTAGGGCTTCGTTTCGGGAATTTCTAAAAATGTTTGTTAAGTTTTTATTCTCTGAATCGGTAGGTTTTGCTTTACTTTTGAAGTGGAAGGATGATTTTAGTGCACTTTCTAGTGATGGATTGGTACTGGCATTGCTTATCTGGTTAGGCATTATGATTGTCTACAATGTTGATGGCGGCTCCTCTACGGTGACAGAGTTTTCGACGTCCAAAACAGGCTTGCGTTTGGCTTTAATATTTTTTTTTTACTCGATATTTGCGGCCTCTGTTTTCGTATTCTTGATTCGGATTGCGTTCCGAATCGAGGAATCTTTAGTACTAGAACCTGCATTGCTGAGAATGTTGAATTGTTCGGCTCCTTCGTGTTTTCGTTAAGGTATTGAGTAGCGTTTTGTTCGTATGAAATTTGTTCTGGTAAATTAGTTCCGGCACTGGAGCCTGGATGCCTCTGTTGCTCTCTGACTCCTTTAGCTCGCTGTGTGTAAAGCTACGGAGAACCGACTGAACTATCAACTTATGTTATTGTGTTGACGGTTGGGAGCTAGTATCTTTTGTTATCATATGCTTAAACATGTTAAATTGACATGAAGATTTGAAGCCTATTTTCTTTTGGCATTATGTTAAAAATTAATAACTTAAATTAATAAGTTAGGGTGAGTTTGATCCTGTTAAAATATTCTTAATCACTCATATTTTTTATTCATGCATACATGAAATGTTGCTCATGTCTTTGAAATATTGCAGCAGTGTTTTGATGAAAGCAAAATATTTCAAATGTTCGTTGAACTTTATTGTGCTTTGACCGTGTATAATGTTTCAAATGTTCAGGCCCAGGCCGTATGCTTCTCTAGCCCTCTCTGCTATCCTGTCGAGTTTCTGTTTTGTCTTGTCTCTAATCTTCTATTTGGTATTTTTGAAGTCCCTGATAGAGAGTTTGTTTTTATATATATTAAAAAAATAATAATAAAGTTGTTGGTGCTCGTGCAGCATATTTACCTTAATTAAGTTGGTGCATGTATAATGCGGATTCTTTTTATAACTTTTCTTCTTTTCTCATTAATTGTAATTGGAGGGTATTCTTATATGCTCTTTTAGATGGACTGAGGTGATACCTTGTCTTCCAAGCTACCTATTTTTCATGAATATATTTTCTTATATTTATGATGAAAAGAATTGAGACCATCTGTTATATATCTACTGTTTAATTTGTGAAACGATAGGTGCAATTAATGAAAATTACTTTTATAATGCTGTGGACTTTTGAAGTATTTGCTTAGGCTGATTGAAGAGGTAGACACTATAAAAATAAAACAAAATAAAGAAGTAAAAGAATATTTATCATTGCTTCTTTTGGATGTTCAGACATTTTGAAGTCATTCCCTTTTCTCCTTAATTTTGGGAAATTGAGGGAGTTGTTAGTTGTTTGTGTTACTCGAACTTCTCGGTAGGGATCCTGCCTTATTGTCTTGCATGGCATCTACATATATATATATATATATTTTTAGTTTAGATCAAGATTCTTTACTGGGTTTTTCTATGCAAACATTGTTTCTGGTTATTCATAATTTCAATAGGATGGTCGTTATTGTTCAGTGTTTTGTTCTAGTATAGAACCCAATGCATCCACTTCTTCTGGAACCTGTGGACAAGTCAATCCAGCCCATAGATCCTTTGTTTCACCCGTCCCTGTCGGTTCTTGA

mRNA sequence

ATGGATCAAATGCTCGGATCTTCCTCAATGTACGGTCATCGACGCCTTTGCAATGCCATACGGCTTACGTGGAAGGATGATTTTAGTGCACTTTCTAGTGATGGATTGGTACTGGCATTGCTTATCTGGTTAGGCATTATGATTGTCTACAATGTTGATGGCGGCTCCTCTACGGATGGTCGTTATTGTTCAGTGTTTTGTTCTAGTATAGAACCCAATGCATCCACTTCTTCTGGAACCTGTGGACAAGTCAATCCAGCCCATAGATCCTTTGTTTCACCCGTCCCTGTCGGTTCTTGA

Coding sequence (CDS)

ATGGATCAAATGCTCGGATCTTCCTCAATGTACGGTCATCGACGCCTTTGCAATGCCATACGGCTTACGTGGAAGGATGATTTTAGTGCACTTTCTAGTGATGGATTGGTACTGGCATTGCTTATCTGGTTAGGCATTATGATTGTCTACAATGTTGATGGCGGCTCCTCTACGGATGGTCGTTATTGTTCAGTGTTTTGTTCTAGTATAGAACCCAATGCATCCACTTCTTCTGGAACCTGTGGACAAGTCAATCCAGCCCATAGATCCTTTGTTTCACCCGTCCCTGTCGGTTCTTGA

Protein sequence

MDQMLGSSSMYGHRRLCNAIRLTWKDDFSALSSDGLVLALLIWLGIMIVYNVDGGSSTDGRYCSVFCSSIEPNASTSSGTCGQVNPAHRSFVSPVPVGS

Homology

The following BLAST results are available for this feature:

BLAST of Tan0003945.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003945.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003945.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003945.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..99

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0003945	Tan0003945	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0003945.1-exon	Tan0003945.1-exon-LG01:101059933..101060058	exon
Tan0003945.1-exon	Tan0003945.1-exon-LG01:101061444..101061548	exon
Tan0003945.1-exon	Tan0003945.1-exon-LG01:101061710..101061778	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0003945.1-cds	Tan0003945.1-cds-LG01:101059933..101060058	CDS
Tan0003945.1-cds	Tan0003945.1-cds-LG01:101061444..101061548	CDS
Tan0003945.1-cds	Tan0003945.1-cds-LG01:101061710..101061778	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0003945.1	Tan0003945.1-protein	polypeptide