Tan0003757.1 (mRNA) Snake gourd v1

Overview


Name	Tan0003757.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG06: 15502267 .. 15504884 (+)
Sequence length	162
RNA-Seq Expression	Tan0003757.1
Synteny	Tan0003757.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGGAGGGTTTGAATCTCCACCTTAAATATTATTAAACTAAAAAAACCTAAAAATATGTATCAATGAATTTAAAAATAATAATCATAAATGAAATTTAAAATGCTCTTAATTTTTTTGGGTTAAAATACCATTTTAAACCCTATACTTTGGGTTTCATTCTATTTTGGTTCTTGTATACTTTTAAATGTTCAAATTTAGTTTCTACACTTTCAATAAAGTTTAAAAGTGACCCTTAATGTTATTTTGAATTGATTTTTTTTTAATCAAAATTGGATAAATAATAATAATAAAAACAATAATTTTCATGGAAAAAAGACTTAATGTGAACGTATTTTAAAAATTTATAGAAAAAAGACTAATAGAGACTATTTTTTTTTTTTACAAAATTTAACAATAAACTAATATTAGGGAAAACTTTATTAAAAATAAAGAGACTAAATTTATGTGTTTGAAATGTTATGGATAAATTTGGACAACCGGGTAAAATCTAACTACAGAAGACAATTGGGTCGAATACATGACAAATCCGAAGATCCATAATAAAGACGGGCCGAAGGAAGCTATAGAGCAGACGAGCCAAATCAGACAATCAGTTCAACTCGAGTTGGCCCGACTCGACCCGGTCGAGGTCGATCAAACAACCCGACTCCGTCTGACGCGACCCACCCCACCCCTCCCAAACAACCCGACCCAACCCGGTCCGACTGATTTGCTTCATCTTCTCTTTCGACCTATTAATTCTTAAAACTCAAATCCATTGGAGTTAGGAGAAGGTCCTGCCTATAAATATCTCGCCTTTCTCTCTGGAAGTTTTTCTTCTTCCCAACTCTGTCTTCAATTTCAACGCCCACACGCCACACCGACGCCTCCCTCCATCAGACAACCTAACTTTCAAAGATATAAGGTTTTTGTTTTTTATACTTTTGAGTTAGGTTTGTAAAAGATCTAAGGACTTTGTTTTTGTTGAACTTGCAATTATCTGGATTTCTGTAGAATGAGGGAAACTTTTGTAATATCTCTACTTCTCGTCCTGCTAAAAATTTGTATTTTGTAATATCATTAAGCTGAGTTAATAATGTAGAACGCAGTGGTGATTCCTTGCTAGACCTCGGTTCATAACCGATGATACTCGGTTTTGGTCCATTACGCTGGATAATCGACCTGTTTGGTTCGGTCCAAATCGGACTGACCCGAAACGCTGTGTTTTGTGTCCCTTTCGGACTTCTCTGCGGCTTAAGTCTGCTTATAAATATTCAAACGGATGCCTAACTTCTTCGTTGTTGATCATCTCTCCCTTCTCTGCGCTATATCTCAGCGAGTTCTTCACGCAATCTTCACCGTCGACCCAATTCCGGATGATTTCCGTCAAATTCTGCTTTTAGTAAACCTTAATCTTTCATGTTTTATAATCGATTTTTCTTTTCGCTCATGATGTTTCAATTTTATATTCCTGTTTTTTTATTTCAATTATTTGAGATCCGGATTGATTTGGTTGCTGCCCTTGTCTTTGATTCTTTGTTTTTTTCGTTGGATTGTTTGATTCCCTGGTTAATTTGGCTTTCTCTTTCTTGGGGCGATGCATTATTTGATTTGGGTTAGGGTTTGTTTTGGATTTGGGGATCTGCTTATTTGGATGTCATCTGGTTTTTTTATTTTTATTTTTCGATTTTGTGTAATTGTTCATCAGAATGGGATTTAAACGGGTATATCATCAAAATTTAAGGTATCAGAATCTATATCGGCTAATTTTCCTTATGTTGCCAGAAATTCAGCCTTGTTTTGGTTTCACTTAGAATTCTTAGACGCTTTGAACTTGCTTCTATTTTTGTGAAACGTTCGGTGACCTAAAATTTGTAGCCAAATCTAATTGAATAAGATATTCTTTTATCTCTTGACGAAAGGGGTCTTAAGGGTTACTAGGAGGGATCACCAGACGGTTGATGTTATTTTGATTGCCTCGTGTGCCTTTTTAACCTTGTACAAACAACTTTTCTAGGGGATGTTGTTGCTCTTGCATCTCCGCTCCTTTTTTTTTTTTTAATGCCTATTTCCCTTTTTTTAATCTGATGGAGGGAGGTTGTTAGGGGGGCGTTGCCTTTAATCTGATGGTGGGTAAAAATCTTTTTTTTTTAGGAGAGTGATTCTGTCGGTTTGTACATATGCCTAACATTTTAGTTAGGAAGTTGTTTGTTGATTTGCACTTATTTTTCTTCCATTGTTGCTGGTTATTGGTTTGTTATTGTTTACACTTTTTTTCAGGGTTGGAGGGTTGGTATTAGAAATAAATTTGACTAGGACTTGTGTGTAAATATATGTGTGTTGGATTTAAATTGTCAATTTTGGCACTTGATATTTGTTTGAATGGGTGTCCTTATAATGGAAATATCAATAGTTGTTGAAATACTTTTCTTTTTTGTAGTTGTTTTTTCCTTTTAAAATTGAGATTTTGTATTTATAACCGTGAAATTTCTTTTATGCGGTATAAATGCAGGTCAAGGACTTGTACAGACCTTGGCGTATTGGAGAAGTTGCTAATAGTCTTTAGTCAAGGGTGTATTCCACCAATTACAACTACAGTTACTGTTCTTTGCTTTCCATTTGTAGACCTGTGA

mRNA sequence

ATGACTAGGAGGCGAGTTCTTCACGCAATCTTCACCGTCGACCCAATTCCGGATGATTTCCGTCAAATTCTGCTTTTATTGCTAATAGTCTTTAGTCAAGGGTGTATTCCACCAATTACAACTACAGTTACTGTTCTTTGCTTTCCATTTGTAGACCTGTGA

Coding sequence (CDS)

ATGACTAGGAGGCGAGTTCTTCACGCAATCTTCACCGTCGACCCAATTCCGGATGATTTCCGTCAAATTCTGCTTTTATTGCTAATAGTCTTTAGTCAAGGGTGTATTCCACCAATTACAACTACAGTTACTGTTCTTTGCTTTCCATTTGTAGACCTGTGA

Protein sequence

MTRRRVLHAIFTVDPIPDDFRQILLLLLIVFSQGCIPPITTTVTVLCFPFVDL

Homology

[Close]

BLAST of Tan0003757.1 vs. NCBI nr
Match: KAG6592864.1 (hypothetical protein SDJN03_12340, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-09
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 4  RRVLHAIFTVDPIPDDFRQILLLLLIV------------FSQGCIPPITTTVTVLCFPFV 54
          +RVLHAIFTVDP  D+F QILLL+  +            FSQGCIPPITTTVTVLCF FV
Sbjct: 18 QRVLHAIFTVDPTADEFHQILLLVKDLYRPWRLGEVANSFSQGCIPPITTTVTVLCFQFV 77

[Close]

BLAST of Tan0003757.1 vs. ExPASy TrEMBL
Match: A0A0A0K8A9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337090 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-10
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 4  RRVLHAIFTVDPIPDDFRQILLLLLIV------------FSQGCIPPITTTVTVLCFPFV 54
          +R+LHAIFTVDP PD+F QILLL+  +            FSQGCIPPITTTVTVLCF FV
Sbjct: 3  QRLLHAIFTVDPTPDEFHQILLLVKDLYRPWRLGEVANNFSQGCIPPITTTVTVLCFEFV 62

The following BLAST results are available for this feature:

BLAST of Tan0003757.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003757.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592864.1	2.9e-09	64.52	hypothetical protein SDJN03_12340, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0003757.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8A9	3.7e-10	64.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337090 PE=4 SV=1	[more]

BLAST of Tan0003757.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..35 score: 7.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0003757	Tan0003757	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0003757.1-exon	Tan0003757.1-exon-LG06:15502267..15502278	exon
Tan0003757.1-exon	Tan0003757.1-exon-LG06:15503588..15503653	exon
Tan0003757.1-exon	Tan0003757.1-exon-LG06:15504801..15504884	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0003757.1-cds	Tan0003757.1-cds-LG06:15502267..15502278	CDS
Tan0003757.1-cds	Tan0003757.1-cds-LG06:15503588..15503653	CDS
Tan0003757.1-cds	Tan0003757.1-cds-LG06:15504801..15504884	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0003757.1	Tan0003757.1-protein	polypeptide