Tan0003757 (gene) Snake gourd v1

Overview
NameTan0003757
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG06: 15502267 .. 15504884 (+)
RNA-Seq ExpressionTan0003757
SyntenyTan0003757
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAGGAGGGTTTGAATCTCCACCTTAAATATTATTAAACTAAAAAAACCTAAAAATATGTATCAATGAATTTAAAAATAATAATCATAAATGAAATTTAAAATGCTCTTAATTTTTTTGGGTTAAAATACCATTTTAAACCCTATACTTTGGGTTTCATTCTATTTTGGTTCTTGTATACTTTTAAATGTTCAAATTTAGTTTCTACACTTTCAATAAAGTTTAAAAGTGACCCTTAATGTTATTTTGAATTGATTTTTTTTTAATCAAAATTGGATAAATAATAATAATAAAAACAATAATTTTCATGGAAAAAAGACTTAATGTGAACGTATTTTAAAAATTTATAGAAAAAAGACTAATAGAGACTATTTTTTTTTTTTACAAAATTTAACAATAAACTAATATTAGGGAAAACTTTATTAAAAATAAAGAGACTAAATTTATGTGTTTGAAATGTTATGGATAAATTTGGACAACCGGGTAAAATCTAACTACAGAAGACAATTGGGTCGAATACATGACAAATCCGAAGATCCATAATAAAGACGGGCCGAAGGAAGCTATAGAGCAGACGAGCCAAATCAGACAATCAGTTCAACTCGAGTTGGCCCGACTCGACCCGGTCGAGGTCGATCAAACAACCCGACTCCGTCTGACGCGACCCACCCCACCCCTCCCAAACAACCCGACCCAACCCGGTCCGACTGATTTGCTTCATCTTCTCTTTCGACCTATTAATTCTTAAAACTCAAATCCATTGGAGTTAGGAGAAGGTCCTGCCTATAAATATCTCGCCTTTCTCTCTGGAAGTTTTTCTTCTTCCCAACTCTGTCTTCAATTTCAACGCCCACACGCCACACCGACGCCTCCCTCCATCAGACAACCTAACTTTCAAAGATATAAGGTTTTTGTTTTTTATACTTTTGAGTTAGGTTTGTAAAAGATCTAAGGACTTTGTTTTTGTTGAACTTGCAATTATCTGGATTTCTGTAGAATGAGGGAAACTTTTGTAATATCTCTACTTCTCGTCCTGCTAAAAATTTGTATTTTGTAATATCATTAAGCTGAGTTAATAATGTAGAACGCAGTGGTGATTCCTTGCTAGACCTCGGTTCATAACCGATGATACTCGGTTTTGGTCCATTACGCTGGATAATCGACCTGTTTGGTTCGGTCCAAATCGGACTGACCCGAAACGCTGTGTTTTGTGTCCCTTTCGGACTTCTCTGCGGCTTAAGTCTGCTTATAAATATTCAAACGGATGCCTAACTTCTTCGTTGTTGATCATCTCTCCCTTCTCTGCGCTATATCTCAGCGAGTTCTTCACGCAATCTTCACCGTCGACCCAATTCCGGATGATTTCCGTCAAATTCTGCTTTTAGTAAACCTTAATCTTTCATGTTTTATAATCGATTTTTCTTTTCGCTCATGATGTTTCAATTTTATATTCCTGTTTTTTTATTTCAATTATTTGAGATCCGGATTGATTTGGTTGCTGCCCTTGTCTTTGATTCTTTGTTTTTTTCGTTGGATTGTTTGATTCCCTGGTTAATTTGGCTTTCTCTTTCTTGGGGCGATGCATTATTTGATTTGGGTTAGGGTTTGTTTTGGATTTGGGGATCTGCTTATTTGGATGTCATCTGGTTTTTTTATTTTTATTTTTCGATTTTGTGTAATTGTTCATCAGAATGGGATTTAAACGGGTATATCATCAAAATTTAAGGTATCAGAATCTATATCGGCTAATTTTCCTTATGTTGCCAGAAATTCAGCCTTGTTTTGGTTTCACTTAGAATTCTTAGACGCTTTGAACTTGCTTCTATTTTTGTGAAACGTTCGGTGACCTAAAATTTGTAGCCAAATCTAATTGAATAAGATATTCTTTTATCTCTTGACGAAAGGGGTCTTAAGGGTTACTAGGAGGGATCACCAGACGGTTGATGTTATTTTGATTGCCTCGTGTGCCTTTTTAACCTTGTACAAACAACTTTTCTAGGGGATGTTGTTGCTCTTGCATCTCCGCTCCTTTTTTTTTTTTTAATGCCTATTTCCCTTTTTTTAATCTGATGGAGGGAGGTTGTTAGGGGGGCGTTGCCTTTAATCTGATGGTGGGTAAAAATCTTTTTTTTTTAGGAGAGTGATTCTGTCGGTTTGTACATATGCCTAACATTTTAGTTAGGAAGTTGTTTGTTGATTTGCACTTATTTTTCTTCCATTGTTGCTGGTTATTGGTTTGTTATTGTTTACACTTTTTTTCAGGGTTGGAGGGTTGGTATTAGAAATAAATTTGACTAGGACTTGTGTGTAAATATATGTGTGTTGGATTTAAATTGTCAATTTTGGCACTTGATATTTGTTTGAATGGGTGTCCTTATAATGGAAATATCAATAGTTGTTGAAATACTTTTCTTTTTTGTAGTTGTTTTTTCCTTTTAAAATTGAGATTTTGTATTTATAACCGTGAAATTTCTTTTATGCGGTATAAATGCAGGTCAAGGACTTGTACAGACCTTGGCGTATTGGAGAAGTTGCTAATAGTCTTTAGTCAAGGGTGTATTCCACCAATTACAACTACAGTTACTGTTCTTTGCTTTCCATTTGTAGACCTGTGA

mRNA sequence

ATGACTAGGAGGCGAGTTCTTCACGCAATCTTCACCGTCGACCCAATTCCGGATGATTTCCGTCAAATTCTGCTTTTATTGCTAATAGTCTTTAGTCAAGGGTGTATTCCACCAATTACAACTACAGTTACTGTTCTTTGCTTTCCATTTGTAGACCTGTGA

Coding sequence (CDS)

ATGACTAGGAGGCGAGTTCTTCACGCAATCTTCACCGTCGACCCAATTCCGGATGATTTCCGTCAAATTCTGCTTTTATTGCTAATAGTCTTTAGTCAAGGGTGTATTCCACCAATTACAACTACAGTTACTGTTCTTTGCTTTCCATTTGTAGACCTGTGA

Protein sequence

MTRRRVLHAIFTVDPIPDDFRQILLLLLIVFSQGCIPPITTTVTVLCFPFVDL
Homology
[Close]
BLAST of Tan0003757 vs. NCBI nr
Match: KAG6592864.1 (hypothetical protein SDJN03_12340, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-09
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 4  RRVLHAIFTVDPIPDDFRQILLLLLIV------------FSQGCIPPITTTVTVLCFPFV 54
          +RVLHAIFTVDP  D+F QILLL+  +            FSQGCIPPITTTVTVLCF FV
Sbjct: 18 QRVLHAIFTVDPTADEFHQILLLVKDLYRPWRLGEVANSFSQGCIPPITTTVTVLCFQFV 77

[Close]
BLAST of Tan0003757 vs. ExPASy TrEMBL
Match: A0A0A0K8A9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337090 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-10
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 4  RRVLHAIFTVDPIPDDFRQILLLLLIV------------FSQGCIPPITTTVTVLCFPFV 54
          +R+LHAIFTVDP PD+F QILLL+  +            FSQGCIPPITTTVTVLCF FV
Sbjct: 3  QRLLHAIFTVDPTPDEFHQILLLVKDLYRPWRLGEVANNFSQGCIPPITTTVTVLCFEFV 62

The following BLAST results are available for this feature:
BLAST of Tan0003757 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0003757 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6592864.12.9e-0964.52hypothetical protein SDJN03_12340, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Tan0003757 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8A93.7e-1064.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337090 PE=4 SV=1[more]
BLAST of Tan0003757 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..35
score: 7.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0003757.1Tan0003757.1mRNA