Tan0003195.1 (mRNA) Snake gourd v1

Overview
NameTan0003195.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
LocationLG04: 41207122 .. 41207388 (-)
Sequence length267
RNA-Seq ExpressionTan0003195.1
SyntenyTan0003195.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGGATGATGGTTGGCGTGGGTACAAGCGGAAAAAGAATGGTTAGATTGGAAAGAAAAGTGAGCATGTTGATGAAAGCGGTCAAAGAGAGAGATTATGAAATTGTCTCTCAAAAGAATCACATAGAAAGTCATGATGTTGTTGAATCGAGTCACACATTTGTCGTAAAGAGTAAGACAAGGGAAAGACTGACATGCAAGAAAGTCAGCCTCAACATTCCACTTCTATTGCTTCAATGCCCGTCCAACAACTTCAAGATATGA

mRNA sequence

ATGTTTGGGATGATGGTTGGCGTGGGTACAAGCGGAAAAAGAATGGTTAGATTGGAAAGAAAAGTGAGCATGTTGATGAAAGCGGTCAAAGAGAGAGATTATGAAATTGTCTCTCAAAAGAATCACATAGAAAGTCATGATGTTGTTGAATCGAGTCACACATTTGTCGTAAAGAGTAAGACAAGGGAAAGACTGACATGCAAGAAAGTCAGCCTCAACATTCCACTTCTATTGCTTCAATGCCCGTCCAACAACTTCAAGATATGA

Coding sequence (CDS)

ATGTTTGGGATGATGGTTGGCGTGGGTACAAGCGGAAAAAGAATGGTTAGATTGGAAAGAAAAGTGAGCATGTTGATGAAAGCGGTCAAAGAGAGAGATTATGAAATTGTCTCTCAAAAGAATCACATAGAAAGTCATGATGTTGTTGAATCGAGTCACACATTTGTCGTAAAGAGTAAGACAAGGGAAAGACTGACATGCAAGAAAGTCAGCCTCAACATTCCACTTCTATTGCTTCAATGCCCGTCCAACAACTTCAAGATATGA

Protein sequence

MFGMMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRERLTCKKVSLNIPLLLLQCPSNNFKI
Homology
BLAST of Tan0003195.1 vs. NCBI nr
Match: KAA0068081.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK26065.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 4.4e-10
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 4   MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVK 59
           M+  V TS  RMV LE+KV+M+MK V+ERDYEI S KNHIESHDV ESSHT+ VK
Sbjct: 85  MVTNVDTSKNRMVELEKKVNMVMKVVEERDYEIASLKNHIESHDVAESSHTYTVK 139

BLAST of Tan0003195.1 vs. NCBI nr
Match: KAA0036729.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 0

Query: 4   MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTR 63
           M+  V TS  RM  LE+KV+MLMKAV+ERDYEI S KNHIESHD  ESSHT  +K+  +
Sbjct: 85  MVTDVDTSENRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKNANK 143

BLAST of Tan0003195.1 vs. NCBI nr
Match: TYK07338.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 4   MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKS 60
           M+  V TS  RM  LE+KV+MLMKAV+ERDYEI S KNHIESHD  ESSHT  +K+
Sbjct: 85  MVTDVDTSENRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKN 140

BLAST of Tan0003195.1 vs. NCBI nr
Match: TYK13602.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 4.9e-09
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 4   MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRE 63
           MM+ V TS  RM+ LE+K++ML+KAV+ R+YEI S KNHIES D  ESSH  + +  T+ 
Sbjct: 95  MMIDVDTSEDRMIELEKKINMLIKAVEARNYEIASLKNHIESRDASESSHNILSRILTKG 154

Query: 64  RLTCKKVSLNI 75
           R  CKKV+  I
Sbjct: 155 RQLCKKVNHKI 165

BLAST of Tan0003195.1 vs. NCBI nr
Match: KAA0035918.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19070.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 4.9e-09
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 4   MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRE 63
           M+  + TS  RMV L +KV+MLMK V+ERDYEI S KNHIESHD  ESSHT  VK+  + 
Sbjct: 85  MVTNMDTSENRMVELNKKVNMLMKVVEERDYEIASLKNHIESHDAAESSHTQTVKNTDKG 144

Query: 64  RLTCKKVSL 73
           +   +++ L
Sbjct: 145 KTVMQEIHL 153

BLAST of Tan0003195.1 vs. ExPASy TrEMBL
Match: A0A5A7VR36 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00210 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.1e-10
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 4   MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVK 59
           M+  V TS  RMV LE+KV+M+MK V+ERDYEI S KNHIESHDV ESSHT+ VK
Sbjct: 85  MVTNVDTSKNRMVELEKKVNMVMKVVEERDYEIASLKNHIESHDVAESSHTYTVK 139

BLAST of Tan0003195.1 vs. ExPASy TrEMBL
Match: A0A5A7T5T3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1244G00140 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.1e-10
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 0

Query: 4   MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTR 63
           M+  V TS  RM  LE+KV+MLMKAV+ERDYEI S KNHIESHD  ESSHT  +K+  +
Sbjct: 85  MVTDVDTSENRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKNANK 143

BLAST of Tan0003195.1 vs. ExPASy TrEMBL
Match: A0A5D3C857 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00540 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 4   MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKS 60
           M+  V TS  RM  LE+KV+MLMKAV+ERDYEI S KNHIESHD  ESSHT  +K+
Sbjct: 85  MVTDVDTSENRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIKN 140

BLAST of Tan0003195.1 vs. ExPASy TrEMBL
Match: A0A5A7SZB7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold529G00330 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.4e-09
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 4   MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRE 63
           M+  + TS  RMV L +KV+MLMK V+ERDYEI S KNHIESHD  ESSHT  VK+  + 
Sbjct: 85  MVTNMDTSENRMVELNKKVNMLMKVVEERDYEIASLKNHIESHDAAESSHTQTVKNTDKG 144

Query: 64  RLTCKKVSL 73
           +   +++ L
Sbjct: 145 KTVMQEIHL 153

BLAST of Tan0003195.1 vs. ExPASy TrEMBL
Match: A0A5A7TQZ3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005340 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.4e-09
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 4   MMVGVGTSGKRMVRLERKVSMLMKAVKERDYEIVSQKNHIESHDVVESSHTFVVKSKTRE 63
           MM+ V TS  RM+ LE+K++ML+KAV+ R+YEI S KNHIES D  ESSH  + +  T+ 
Sbjct: 99  MMIDVDTSEDRMIELEKKINMLIKAVEARNYEIASLKNHIESRDASESSHNILSRILTKG 158

Query: 64  RLTCKKVSLNI 75
           R  CKKV+  I
Sbjct: 159 RQLCKKVNHKI 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0068081.14.4e-1069.09ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK26065.1 ty3-gyp... [more]
KAA0036729.11.7e-0962.71ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07338.12.2e-0966.07ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK13602.14.9e-0953.52ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035918.14.9e-0953.62ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19070.1 ty3-gyp... [more]
Match NameE-valueIdentityDescription
A0A5A7VR362.1e-1069.09Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7T5T38.1e-1062.71Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3C8571.1e-0966.07Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SZB72.4e-0953.62Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TQZ32.4e-0953.52Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0003195Tan0003195gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0003195.1-cdsTan0003195.1-cds-LG04:41207122..41207388CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0003195.1-exonTan0003195.1-exon-LG04:41207122..41207388exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0003195.1Tan0003195.1-proteinpolypeptide