Tan0002973.3 (mRNA) Snake gourd v1

Overview


Name	Tan0002973.3
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG02: 87951061 .. 87956359 (-)
Sequence length	1090
RNA-Seq Expression	Tan0002973.3
Synteny	Tan0002973.3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCATCTGTTTCAATCCATAAGTTATGAAATCCCAAATTACCAGCTATCTCCATTCCCCTCAGAAGAGCCAGTGCTTCAGCTGAGAGAGGATCAATGCTACCCGATAGTTTCTCCGATCTTGCTGCAACCATTCTTCCATTGGAGTCTCGAATGACTGCGCCAAGTCCAGTGATCTTCTTTGAATCAGGTAGAGTTTCTGAAATGATTGAATTTCCATCTTTCATTTTGTAATTTTCTATATAGTTAATGATTCAGGTCACTTTACTATCAACGTCTGGTATGGCTTTGTTTCTATCTGACCAAATTGCCCAGCTGCATACACAGAGGAGCTTGCCTTCTGTTTCATCTAGCTTTTCTAACCCCCGAATCAGGAGATCTGAGGTTGTTAATCGCATATGGATGCTACCCGAGATCTTTGGTAAGATGCTATTCCAAATCTTCTTAGATCTCTAAGATTGGAAAATGGCATGAGTTTCTGTTTCTCCTTCTTTTCCATATAGACTGCACCATGGATCCATAGACACTTTACGTTTGTGGGGGTTATGCTTTGTAGGTAGACTATCGTGAAAAAGTCTCCATATAAATATTTTGATTTTAGCTGGAATGTCTAAGGTCCATAGGTTTTTCCACCATTTATTTAGCATGGTATTGTTAGAACTTGACTCTTCTTCTTTTTCCCTATTAATGTATACCTTATATGCACTTTTAGTGGAAAAGTTTCCATCCTTCGTGTAATGTCATATCCATCTATCTGGTAGTGATGTTTTGCAAATAGGTATAGTTTGGATGATTTGAATGTCATCTTCCTGAAGGATTGACATCATTTTATTGCTATCCCATTTGCCGGAATTGGTAATAATATCACTAACTTTCATGGATTTGGATACCTCAGTAGGTCTGGACAAAGGTCTGAAGGTAGAAGGTTGAGGAATTCATAGATGTTCAAATATAAGGGTGTCTGCTCCTCAGGTTGTGTCATATATATTTCTTCATCTAAGTCACCATTTAGGAAAGCCGTTTTTACATCCATTTGATGTATTAACAAGCCACGAATTGTTGCAAATGCAATCATTGCTCTAATGGTAGCTATTTTAGTCACAGGAGAATAAGTATCAAAGTATCTATACCTTATTTGTGTGTATATCCTACAACCACTAATCTAGCCTTGAATTTTTCAATTGATCCATCAGGTCTAATTTTCTTTTTGAAAATCCATTTGCATTTAATAGGCTTATTACCTTTAGGCAAATCTACCAAGTCCCATGTTTGATTCATAAGCAAGGAATCTAATTCACTTTTAATTGCTTCTTTCCAAAACTTGGAGTCTATTGAGCATAAGGCCTCTTGATATGATTTAGGTTCCTCATCTATTAAGAACATGCAAGCAAATTGATTGTCTATCTTATCTGAATTTTCTACTAAGAAAATAGTTAAAAAATCAAATCCAAAATTTTTATCAATTTTTTGTCTTTTACTTCTTCTAGGCTCATGCAAACTATCAAAAGCAGATGGTAATTGCATAGTTATCTGGTCATTGACTGTGATGTTGACATTCTTAGTATTAGTAGGTTCACTAGCTACTTTAACCATGGGAAAAATATTTTCAAAGAATTCAGCATCTCTATATTCACAAATTGATTTATCATTTAAGCACATAAACCTATATGCAGCACTATTATGAGCATAACCAATAAAAACACAGTCAAAAGTTTTAGATCCAACCGTAGGTTTCTTGAATGATAGATATGTCACTTTAGCTAAGCATCCCCACACTCTCAAGTAGCTTAGATTAGGCGAATAACCCTTCCACAATTCGTATGGTGTCTTATCCAACCTTTTGTGAGGAACCCTGCTAAGAATGAAACATGCAGAAAGCACAGCTTCCCCCCACAAATTGTCAGATAACCCAAAACTTAATAACATAGCATTCATCATTTCTTTCAGTGTTCTATTCTTACGTTCAGCTATGCCATTTTGTTGAGGAGAGTATGGTGGAGTAGTTTCATGTATAATTCCATTTAATTCACAAAATTCTTTAAGAAAATTATCACTATATTCACCACCTCTGTCGGATCTTAACCTTTTTATCCTTTTATCCAACTGATTTTCTACTTCAGCTTTAAATTTTAAAAACATGCTACTTGCCTCATCTTTAGATTTTAAAAGATAATTTTTTGTATATCTAGAAAAATCATCAACGAACGATATATAATAGTTTTTACCACCTCTGCTTGTAGTATTTTTGAAATCAGCCAAATCAGAATGGATTAGTTCAAGTAACTCTGTACTTCTAGTTGTGACAGGTTTAAAAGGTTTCTTTGTGAATTTGGCTTCTACACATACATAACATTTTCCAGTTTAATGTGATTCTGATGCATTAATAAGGTTTAGATTCTTCAACCTTTTAACTGATGCAACGTTTACATATCCTAGTCTAGCATGCCATATGTCAATAGATTCAACGATATAAGCAAACGAGAGGTACTTTCATTCATCAATGCACCACTAACAACCGTGTTCAGAACAAATAAACCATCAGCTAGATAACCATTACCAACAAAGTCACCATTTTTGGTGATGATAACCTTGTCAGCCTCAAACACAATTCTAAGCCCAGCCTTGTTCAACAGACTTCCAGACACCAAGTTCCTACGTCGTGAAGGAACATATAAAACATCACTTAATGATAAAGTTTTTCCATAGGTAAGTTTTAAGAGAACCTTTCTTTTTCCAAGTACTCCAGCAGTTGCAGAGTTCCCCATGAACACACATTCACCATCAGCACAATCTTGGTAGTCATGGAACAACTCTCGATTTAAACAAAAATGTTTTGAAGCTCCAATGTCCAGAATCCAGTCAGACTTACTCTCGATTTGAACAAAAATGTCTTCTACTACGACCACAAAGAAAGAATGATTTCTTCTTGTTCAATGAGGTTGGCTTTGTGGAATGAGTTTTGATCCGCTTTCCTTTCTTCCGTTTGCACTTTGGTATGATTTGTGTCCAGGTTTTCCGCACACATAACAGATCAACTTAGACTTCTCAATTTTTCCATTGGAAGCCCTAAACTGATGCCCCTTTTGTGTTCTGTCTTTGGCAGTTTGTTTTCCTTTGTTTTTGAACCTGTCTTTTAAGGCAACAGAAGACTCAACAAGGTTAACATTAACAGAGTTCAGAGATTGAGAATTCATCTTATCTTTCTGCCTATTGGCTTCTTCAGTGCGCATGTGACAGATCAGTTCTTGCAAGGTCAGGTCCTTCTTTTTGTGTTTCAGGTGGTTGCGATAGTCACTCCAGATGGAGAGAATTTTTCGAGCAGTACGTTCGCTTGAAGAATTTCGCACATCTTCATGCCTTCAGTCAGTACATTAGCTACCAGATTTTCATATTCACGAACTTGCTCCATGACTAGTTTGTCATTTGTCATCTGAAATTGCAACCATTTTCCAACAACGTGTTTTCTTCTACCTGCATCATCTTTACCATATCTAGATTCCAGAATATCCCATATTACCTTTGCAGATTTCTGAACGACAAAGAGATCGAACAGAGAATTAGTCATGTGATTCAGGAGATGGTCGCGGACCGTCTTGTTATCTTTCTCGAACTTGTCATCTCCATCAGTATCCTTTTTCGATTGGGCAGAATCAATATGGACAGTTGGATCAACCTCAGCAACAATGATGGAACTTCTCGGATCTGCCGATGTTGTAACAGTAGGCCTCTGTGATTTGTCGGACAGTAGAACATAATCGACCTCCAACTGTTCGAAGAAGATCAAGAGTTTCTGAGACCAACGTCGGTAGTTTGATCCGTCAAGTGGTTCTAATTTAGACAGATCTGGCAGCACCTTTCCCGATCTGATCATCGACATAGTAAAAGATAAATTGCTTTCAAATTGTTACCTAGGACGATGATTAGAAAGTTGTTGTGTCGTGGAAAACCACTGCCTTGAAAGCAATTTCGGCACGACCATGGTGCTAAATCGCTACAGTCGGTTGCTCCCCAAGGTTAACACAACACCCAATCGTTGCGTGCACTCGCCAATCAAGGGTTGGAATTAAGAAGAACAAAGCTTGGGAAAATCGAGTACAAAAACTAGATTCGAAAAACTACAATCCACAATTCTGTATATTTTTCATTCAGATCTGAAGATAAACTAAAAGGAGAAGAGAGAGACGTTTTTTTCATATCTAGATCTGGATCGCGCATTTTCCTGAACTCGAACCCGAACGTCCGACCAGACGGACGACGGTGGTGGCGTGCGTGTGGGGAGATGTTTTGTTACCACTACATCCACTTTTTACCAATTTCCATGTGAGCCAATGTATAAAAATCACTCACATTTCCACAATCTTTCCAATGTGGGACAAACACTCTCATTCACATATGGGACAAACACTCCCATTCTTTATGTAACTTTTAGGCCTTAGGCTCAAGTCATTCTCCACATACACATATAGGTAAAATGGTAGAGTGAGTTGCTAATAGATAATTTTTCTTTTTTTCTTTTTCCTTTAAAAAATTAAAGTTGAAGTTGGAATATTATCACTTTACAAATTAATGTACCAATTTGTTTAAAGCTACCTACAACAGTTTCTAGAGTATAATGTGTGGAATATATCAGATACTCTGGAGCCAATTACAAAAAGACAATGTCTATGGAGACCTCTAGCATTCCCAAAACTTCAAATTAAATACAGATGCAACAATTTTCAGAAATGAAAATCAGTGTGGTGTGAGTGCAGTGATACGAGTTGAGAAGGGAAATGTGATGATTACCTTGATCAAACCGGTTTCGTGGATTACTGATGTTGTAACAGCCGAAGCAATTGCGGTTCGAGAAGCTTTAACACTGGCTAATGAAATGGGGTTTCATCATCTAGAAGTTGAAACAGAGTCTTCCCTAGTGATTAATCTCATTCACAAAAAATCCCAAAATCAATCAGAGTTAGGGCAGATTATCGAAGAAATAAGGTAGTTGGTAAGGAAGATGATAAAATGTTCCTTCTCCTGGTGTGATCGAAAGGCAAACTCTCTGGCGTAATCTCTGGCTAGACATGCAAAAGATTTCTCTGAAGAGGCGATGTGGATGGAAGAGATCCCTGAGTTCTCGAGAGCTTTCTTCGAGGCTGAGAGAAATGTAGAAGAAACCTGTTGTTAAGCAGAGTTTTCATGTTTTGTTTTCTTTATTTCGTTATTATTCAAAAAAAAAAATATGTACCAGTTCGTTTATAATTTTTATGTCAATATTTATTTATAATCATTATTATTCTATAAAACTATAATCAATCCTAC

mRNA sequence

TGCATCTGTTTCAATCCATAAGTTATGAAATCCCAAATTACCAGCTATCTCCATTCCCCTCAGAAGAGCCAGTGCTTCAGCTGAGAGAGGATCAATGCTACCCGATAGTTTCTCCGATCTTGCTGCAACCATTCTTCCATTGGAGTCTCGAATGACTGCGCCAAGTCCAGTGATCTTCTTTGAATCAGGTAGAGTTTCTGAAATGATTGAATTTCCATCTTTCATTTTGTAATTTTCTATATAGTTAATGATTCAGGTCACTTTACTATCAACGTCTGGTATGGCTTTGTTTCTATCTGACCAAATTGCCCAGCTGCATACACAGAGGAGCTTGCCTTCTGTTTCATCTAGCTTTTCTAACCCCCGAATCAGGAGATCTGAGGTTGTTAATCGCATATGGATGCTACCCGAGATCTTTGATACTCTGGAGCCAATTACAAAAAGACAATGTCTATGGAGACCTCTAGCATTCCCAAAACTTCAAATTAAATACAGATGCAACAATTTTCAGAAATGAAAATCAGTGTGGTGTGAGTGCAGTGATACGAGTTGAGAAGGGAAATGTGATGATTACCTTGATCAAACCGGTTTCGTGGATTACTGATGTTGTAACAGCCGAAGCAATTGCGGTTCGAGAAGCTTTAACACTGGCTAATGAAATGGGGTTTCATCATCTAGAAGTTGAAACAGAGTCTTCCCTAGTGATTAATCTCATTCACAAAAAATCCCAAAATCAATCAGAGTTAGGGCAGATTATCGAAGAAATAAGGTAGTTGGTAAGGAAGATGATAAAATGTTCCTTCTCCTGGTGTGATCGAAAGGCAAACTCTCTGGCGTAATCTCTGGCTAGACATGCAAAAGATTTCTCTGAAGAGGCGATGTGGATGGAAGAGATCCCTGAGTTCTCGAGAGCTTTCTTCGAGGCTGAGAGAAATGTAGAAGAAACCTGTTGTTAAGCAGAGTTTTCATGTTTTGTTTTCTTTATTTCGTTATTATTCAAAAAAAAAAATATGTACCAGTTCGTTTATAATTTTTATGTCAATATTTATTTATAATCATTATTATTCTATAAAACTATAATCAATCCTAC

Coding sequence (CDS)

ATGATTCAGGTCACTTTACTATCAACGTCTGGTATGGCTTTGTTTCTATCTGACCAAATTGCCCAGCTGCATACACAGAGGAGCTTGCCTTCTGTTTCATCTAGCTTTTCTAACCCCCGAATCAGGAGATCTGAGGTTGTTAATCGCATATGGATGCTACCCGAGATCTTTGATACTCTGGAGCCAATTACAAAAAGACAATGTCTATGGAGACCTCTAGCATTCCCAAAACTTCAAATTAAATACAGATGCAACAATTTTCAGAAATGA

Protein sequence

MIQVTLLSTSGMALFLSDQIAQLHTQRSLPSVSSSFSNPRIRRSEVVNRIWMLPEIFDTLEPITKRQCLWRPLAFPKLQIKYRCNNFQK

Homology

The following BLAST results are available for this feature:

BLAST of Tan0002973.3 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002973.3 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002973.3 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002973.3 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0002973	Tan0002973	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0002973.3-exon	Tan0002973.3-exon-LG02:87951061..87951731	exon
Tan0002973.3-exon	Tan0002973.3-exon-LG02:87955941..87956359	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0002973.3-three_prime_utr	Tan0002973.3-three_prime_utr-LG02:87951061..87951633	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0002973.3-cds	Tan0002973.3-cds-LG02:87951634..87951731	CDS
Tan0002973.3-cds	Tan0002973.3-cds-LG02:87955941..87956112	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0002973.3-five_prime_utr	Tan0002973.3-five_prime_utr-LG02:87956113..87956359	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0002973.3	Tan0002973.3-protein	polypeptide