Tan0001392.2 (mRNA) Snake gourd v1

Overview
NameTan0001392.2
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionU3 small nucleolar ribonucleoprotein protein IMP3
LocationLG04: 61381683 .. 61383513 (+)
Sequence length1644
RNA-Seq ExpressionTan0001392.2
SyntenyTan0001392.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTGATTTTTGTCCACAATATTTGTGATGACAAGAAAGTGATGTTATGGCATATTGTAAGGCTGTTCATTTTGATCAGTGCTAACATCTCTTCTCTCTAGCCTAGAGGTTCTAACAATTCAAGAGCCAGTTTTGAGACTGAGATGTTGCATTTAAGATTAGAAGTGAAAAATGCGATGTAAAAAGATGTTAAAAAAAAGGAACGCTACATCAATTCCACATTTTGTCTTATAAAAGAACTCAACTAGCAATTTTAGTTGGTTTTCTTCTTCTATGCTTAATTATTGGGAAAAGCATGAATGAATTGCTGATCATTTTTCTCTTATTGCCCAATGAGCTCAGTGTATCTAGAATGAAAGGTCTAGTTTCTTAATTCTTCTAACCAATGACTTAGGCCCCGTTTGATAACCATTTTGTTTTTTGTTTTTTGTTTTTGAAAGTTAAGCTTATTTCCCTACAATGGAGATCATCTCCCTTAAGTAAGCATTTGAATTCTAAAAACAAAGTCAAGTTTTTGAAAACTACTTTTTTTAGTTTTCAAAAGTTAGTTTGGTTTGTTAAAATATAGGTACAAAATAGATAAGAAAACATACAAACTCATGGGTAGAAGTAGTATTTTTAGATTTAAATATCAAAAATTAAAAACTAAAAACAAAATGATTTTCAAACGGAGCCTTAGGTTCCCATTTTACTCCTCTACCTACCGTTTTAACGAAACTATCAACGTTCCCAGGACTTGTCAATACATTTTTGACCCCTTTTGTTTAACGCTTAAGACATGTTAAACCTAATATCCTTTGGCCAAATGTTTCAAGAACCAAATATTTTTGTTGAATTGTCCAAGATTGAATAATGGCACAAGAAACTATCGGTATTCCTCATGGGTACTCTATATTATATTTCTCTAATGCTGAAGCCATTTTAACTTGTCAGTATCTTTTGGCCCAATGTTTCAAGAATCCAAATCTCTTTTTAATATATTATCTGGAGTCTCAATGAATGATTGCGTTGTTAATCTGACTAAACTGGGGAATTAATAAAAGCAGATAATTTGAAATGTTATCATTTCAACTACTATTCATAACTTTTACCTGTATTACTCACACTTTATCCCCTGCTTCTCTCCTGAAAAAATATGACAGGTACAATATTGGCGTGATACCGACCCGACAGAGCTTGAATTTATGTGATCGTTTGTCAGTGTCATCCTTTTGCAGGTAAAATGAACGTCCTGCAGAAAAGAATTCATTTCTACATTGCAATGTTACATACTTTCTCTGCTAATATAACCAATACTAGTACTCTGAAAATAGTAATTCCAATCACAGACGGTTGTCGGCGCTGTTATTGCTTTTGCTGCATATTGTTTTTACATCAAGTCTGTTTTCCCCTTTCTCTCTGCAGACGAAGACTATCGACGGTGTTGGTACGTTTGAAGTTTGCTGAACACTTGAGGGAAGCTGTTACATACATCGAGCAAGGGCACATTAGAATTGGTCCAGAGACGGTTACCGATCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAGCTGGATGATTATGATGCCATGAACTGCTGAGATGAGTTATTTCCAAGTTTTGTTCCTTTTCATCACAACCTCTTGTATGAATTATTTCTCTGGCCCTCCTAATTGAAATGGCTAGTTAATGTAGCATCAGTTTTCTCCCTTATCTTCTAATCAATATATAGTTTTACATTGTTTTATATTACAAGCTTGATATCTCAGCTTCATGGATGTCTCTTTGTTGGGA

mRNA sequence

TGTGATTTTTGTCCACAATATTTGTGATGACAAGAAAGTGATGTTATGGCATATTGTAAGGCTGTTCATTTTGATCAGTGCTAACATCTCTTCTCTCTAGCCTAGAGGTTCTAACAATTCAAGAGCCAGTTTTGAGACTGAGATGTTGCATTTAAGATTAGAAGTGAAAAATGCGATGTAAAAAGATGTTAAAAAAAAGGAACGCTACATCAATTCCACATTTTGTCTTATAAAAGAACTCAACTAGCAATTTTAGTTGGTTTTCTTCTTCTATGCTTAATTATTGGGAAAAGCATGAATGAATTGCTGATCATTTTTCTCTTATTGCCCAATGAGCTCAGTGTATCTAGAATGAAAGGTCTAGTTTCTTAATTCTTCTAACCAATGACTTAGGCCCCGTTTGATAACCATTTTGTTTTTTGTTTTTTGTTTTTGAAAGTTAAGCTTATTTCCCTACAATGGAGATCATCTCCCTTAAGTAAGCATTTGAATTCTAAAAACAAAGTCAAGTTTTTGAAAACTACTTTTTTTAGTTTTCAAAAGTTAGTTTGGTTTGTTAAAATATAGGTACAAAATAGATAAGAAAACATACAAACTCATGGGTAGAAGTAGTATTTTTAGATTTAAATATCAAAAATTAAAAACTAAAAACAAAATGATTTTCAAACGGAGCCTTAGGTTCCCATTTTACTCCTCTACCTACCGTTTTAACGAAACTATCAACGTTCCCAGGACTTGTCAATACATTTTTGACCCCTTTTGTTTAACGCTTAAGACATGTTAAACCTAATATCCTTTGGCCAAATGTTTCAAGAACCAAATATTTTTGTTGAATTGTCCAAGATTGAATAATGGCACAAGAAACTATCGGTATTCCTCATGGGTACTCTATATTATATTTCTCTAATGCTGAAGCCATTTTAACTTGTCAGTATCTTTTGGCCCAATGTTTCAAGAATCCAAATCTCTTTTTAATATATTATCTGGAGTCTCAATGAATGATTGCGTTGTTAATCTGACTAAACTGGGGAATTAATAAAAGCAGATAATTTGAAATGTTATCATTTCAACTACTATTCATAACTTTTACCTGTATTACTCACACTTTATCCCCTGCTTCTCTCCTGAAAAAATATGACAGGTACAATATTGGCGTGATACCGACCCGACAGAGCTTGAATTTATGTGATCGTTTGTCAGTGTCATCCTTTTGCAGACGAAGACTATCGACGGTGTTGGTACGTTTGAAGTTTGCTGAACACTTGAGGGAAGCTGTTACATACATCGAGCAAGGGCACATTAGAATTGGTCCAGAGACGGTTACCGATCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAGCTGGATGATTATGATGCCATGAACTGCTGAGATGAGTTATTTCCAAGTTTTGTTCCTTTTCATCACAACCTCTTGTATGAATTATTTCTCTGGCCCTCCTAATTGAAATGGCTAGTTAATGTAGCATCAGTTTTCTCCCTTATCTTCTAATCAATATATAGTTTTACATTGTTTTATATTACAAGCTTGATATCTCAGCTTCATGGATGTCTCTTTGTTGGGA

Coding sequence (CDS)

ATGTTATCATTTCAACTACTATTCATAACTTTTACCTGTATTACTCACACTTTATCCCCTGCTTCTCTCCTGAAAAAATATGACAGGTACAATATTGGCGTGATACCGACCCGACAGAGCTTGAATTTATGTGATCGTTTGTCAGTGTCATCCTTTTGCAGACGAAGACTATCGACGGTGTTGGTACGTTTGAAGTTTGCTGAACACTTGAGGGAAGCTGTTACATACATCGAGCAAGGGCACATTAGAATTGGTCCAGAGACGGTTACCGATCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAGCTGGATGATTATGATGCCATGAACTGCTGA

Protein sequence

MLSFQLLFITFTCITHTLSPASLLKKYDRYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC
Homology
[Close]
BLAST of Tan0001392.2 vs. ExPASy Swiss-Prot
Match: Q921Y2 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Imp3 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 9.5e-36
Identity = 69/107 (64.49%), Postives = 91/107 (85.05%), Query Frame = 0 

Query: 21  ASLLKKYDRYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQG 80
           A+LL K   Y +G++PTR SL LCD +S SSFCRRRL T+L++L+ A+HL+ AV ++EQG
Sbjct: 77  AALLDKL--YAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQG 136

Query: 81  HIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 128
           H+R+GP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 137 HVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Tan0001392.2 vs. ExPASy Swiss-Prot
Match: Q9NV31 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-35
Identity = 69/107 (64.49%), Postives = 91/107 (85.05%), Query Frame = 0 

Query: 21  ASLLKKYDRYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQG 80
           A+LL K   Y +G++PTR SL LCD ++ SSFCRRRL TVL++L+ A+HL+ AV ++EQG
Sbjct: 77  AALLDKL--YALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQG 136

Query: 81  HIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 128
           H+R+GP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 137 HVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Tan0001392.2 vs. ExPASy Swiss-Prot
Match: Q3T0M3 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-35
Identity = 69/109 (63.30%), Postives = 91/109 (83.49%), Query Frame = 0 

Query: 19  SPASLLKKYDRYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIE 78
           S A+LL K   Y +G++PTR S  LCD ++ SSFCRRRL TVL++L+ A+HL+ AV ++E
Sbjct: 75  SSAALLDKL--YALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVE 134

Query: 79  QGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 128
           QGH+R+GP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 135 QGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Tan0001392.2 vs. ExPASy Swiss-Prot
Match: P32899 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.0e-26
Identity = 51/99 (51.52%), Postives = 81/99 (81.82%), Query Frame = 0 

Query: 30  YNIGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPET 89
           Y +GV+ T+  + +L ++++VS+ CRRRL  ++ RLK AE +++AV +IEQGH+R+GP  
Sbjct: 83  YAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNL 142

Query: 90  VTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 128
           + DPA+LVTRNMED++TWVD+SKIK+ +L+Y +++DD+D
Sbjct: 143 INDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181

[Close]
BLAST of Tan0001392.2 vs. ExPASy Swiss-Prot
Match: O13835 (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp3 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.2e-26
Identity = 48/101 (47.52%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 30  YNIGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPET 89
           +++G++P++  + ++ ++ +VS+ CRRRL  ++ +L+ ++ + EA   IEQGH+R+GP  
Sbjct: 83  FDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHV 142

Query: 90  VTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAM 130
           +TDPA+LVTR++EDF+TW D+SKIKR + +YNDKLDDYD +
Sbjct: 143 ITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDYDLL 183

[Close]
BLAST of Tan0001392.2 vs. NCBI nr
Match: XP_022155080.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Momordica charantia])

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-50
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 30  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETV 89
           YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR+GPETV
Sbjct: 82  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETV 141

Query: 90  TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 132
           TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC
Sbjct: 142 TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 183

[Close]
BLAST of Tan0001392.2 vs. NCBI nr
Match: KAA0041194.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >KAA0046137.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >TYK02423.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 5.5e-49
Identity = 98/102 (96.08%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 30  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETV 89
           YN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR+GPETV
Sbjct: 82  YNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETV 141

Query: 90  TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 132
           TDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA+NC
Sbjct: 142 TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDAINC 183

[Close]
BLAST of Tan0001392.2 vs. NCBI nr
Match: TYK23826.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 5.5e-49
Identity = 98/102 (96.08%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 30  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETV 89
           YN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR+GPETV
Sbjct: 82  YNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETV 141

Query: 90  TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 132
           TDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA+NC
Sbjct: 142 TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDAINC 183

[Close]
BLAST of Tan0001392.2 vs. NCBI nr
Match: XP_038880355.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida])

HSP 1 Score: 204.5 bits (519), Expect = 5.5e-49
Identity = 98/102 (96.08%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 30  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETV 89
           YN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR+GPETV
Sbjct: 82  YNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETV 141

Query: 90  TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 132
           TDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA+NC
Sbjct: 142 TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDAINC 183

[Close]
BLAST of Tan0001392.2 vs. NCBI nr
Match: XP_004153543.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 hypothetical protein Csa_015405 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 7.2e-49
Identity = 97/102 (95.10%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 30  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETV 89
           YN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR+GPETV
Sbjct: 82  YNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETV 141

Query: 90  TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 132
           TDPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDDYDA+NC
Sbjct: 142 TDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDAINC 183

[Close]
BLAST of Tan0001392.2 vs. ExPASy TrEMBL
Match: A0A6J1DLF0 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Momordica charantia OX=3673 GN=LOC111022212 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 30  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETV 89
           YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR+GPETV
Sbjct: 82  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETV 141

Query: 90  TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 132
           TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC
Sbjct: 142 TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 183

[Close]
BLAST of Tan0001392.2 vs. ExPASy TrEMBL
Match: A0A5D3BRX0 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00220 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.7e-49
Identity = 98/102 (96.08%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 30  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETV 89
           YN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR+GPETV
Sbjct: 82  YNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETV 141

Query: 90  TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 132
           TDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA+NC
Sbjct: 142 TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDAINC 183

[Close]
BLAST of Tan0001392.2 vs. ExPASy TrEMBL
Match: A0A5D3DJI4 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00290 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.7e-49
Identity = 98/102 (96.08%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 30  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETV 89
           YN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR+GPETV
Sbjct: 82  YNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETV 141

Query: 90  TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 132
           TDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA+NC
Sbjct: 142 TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDAINC 183

[Close]
BLAST of Tan0001392.2 vs. ExPASy TrEMBL
Match: A0A6J1J025 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita maxima OX=3661 GN=LOC111480011 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.5e-49
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 30  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETV 89
           YN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR+GPETV
Sbjct: 82  YNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETV 141

Query: 90  TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 132
            DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DAMNC
Sbjct: 142 NDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDAMNC 183

[Close]
BLAST of Tan0001392.2 vs. ExPASy TrEMBL
Match: A0A0A0KZG3 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126420 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.5e-49
Identity = 97/102 (95.10%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 30  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETV 89
           YN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIR+GPETV
Sbjct: 82  YNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETV 141

Query: 90  TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC 132
           TDPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDDYDA+NC
Sbjct: 142 TDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDAINC 183

[Close]
BLAST of Tan0001392.2 vs. TAIR 10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-45
Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 30  YNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETV 89
           YN+GVIPTR+SL L +RLSVSSFCRRRLSTVLV LKFAEH +EAVTYIEQGH+R+GPET+
Sbjct: 82  YNMGVIPTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETI 141

Query: 90  TDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAM 130
           TDPAFLVTRNMEDFITWVDSSKIKRKVL+YND LDDYD +
Sbjct: 142 TDPAFLVTRNMEDFITWVDSSKIKRKVLEYNDTLDDYDML 181

[Close]
BLAST of Tan0001392.2 vs. TAIR 10
Match: AT5G39850.1 (Ribosomal protein S4 )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 25/75 (33.33%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 22  SLLKKYDRYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGH 81
           +LL++ +RY + +  T+  L+    L+V +F  RRL T++ +   A+ +  A   I Q H
Sbjct: 77  ALLRRMNRYGL-LDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRH 136

Query: 82  IRIGPETVTDPAFLV 97
           IR+G + V  P+F+V
Sbjct: 137 IRVGRQLVNIPSFMV 150

[Close]
BLAST of Tan0001392.2 vs. TAIR 10
Match: AT5G15200.1 (Ribosomal protein S4 )

HSP 1 Score: 45.4 bits (106), Expect = 4.0e-05
Identity = 25/89 (28.09%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 22  SLLKKYDRYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGH 81
           +LL++ +RY + +  ++  L+    L+V +F  RRL T++ +   A+ +  +   I Q H
Sbjct: 77  ALLRRMNRYGL-LDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRH 136

Query: 82  IRIGPETVTDPAFLVTRNMEDFITWVDSS 111
           IR+G + V  P+F+V  + +  I +  +S
Sbjct: 137 IRVGKQLVNIPSFMVRLDSQKHIDFALTS 164

The following BLAST results are available for this feature:
BLAST of Tan0001392.2 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q921Y29.5e-3664.49U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Im... [more]
Q9NV311.2e-3564.49U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP... [more]
Q3T0M32.8e-3563.30U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 ... [more]
P328994.0e-2651.52U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (s... [more]
O138355.2e-2647.52U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (... [more]
BLAST of Tan0001392.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155080.12.9e-5099.02U3 small nucleolar ribonucleoprotein protein IMP3 [Momordica charantia][more]
KAA0041194.15.5e-4996.08U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
TYK23826.15.5e-4996.08U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
XP_038880355.15.5e-4996.08U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida][more]
XP_004153543.17.2e-4995.10U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 ... [more]
BLAST of Tan0001392.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DLF01.4e-5099.02U3 small nucleolar ribonucleoprotein protein IMP3 OS=Momordica charantia OX=3673... [more]
A0A5D3BRX02.7e-4996.08U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
A0A5D3DJI42.7e-4996.08U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
A0A6J1J0253.5e-4996.08U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita maxima OX=3661 GN... [more]
A0A0A0KZG33.5e-4995.10S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126... [more]
BLAST of Tan0001392.2 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G15750.11.8e-4585.00Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [more]
AT5G39850.11.4e-0533.33Ribosomal protein S4 [more]
AT5G15200.14.0e-0528.09Ribosomal protein S4 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 55..118
e-value: 4.8E-8
score: 42.7
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 55..101
e-value: 3.0E-11
score: 42.8
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 55..123
e-value: 2.491E-9
score: 48.3998
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 55..130
e-value: 8.2E-8
score: 34.4
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 21..129
NoneNo IPR availablePROSITEPS50889S4coord: 55..121
score: 11.638736
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 46..123
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 21..129

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0001392Tan0001392gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0001392.2-five_prime_utrTan0001392.2-five_prime_utr-LG04:61381683..61382737five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0001392.2-exonTan0001392.2-exon-LG04:61381683..61382898exon
Tan0001392.2-exonTan0001392.2-exon-LG04:61383086..61383513exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0001392.2-cdsTan0001392.2-cds-LG04:61382738..61382898CDS
Tan0001392.2-cdsTan0001392.2-cds-LG04:61383086..61383320CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0001392.2-three_prime_utrTan0001392.2-three_prime_utr-LG04:61383321..61383513three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0001392.2Tan0001392.2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0034457 Mpp10 complex
cellular_component GO:0005840 ribosome
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0003723 RNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0003735 structural constituent of ribosome