Tan0001392 (gene) Snake gourd v1

Overview
NameTan0001392
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionU3 small nucleolar ribonucleoprotein protein IMP3
LocationLG04: 61380961 .. 61383513 (+)
RNA-Seq ExpressionTan0001392
SyntenyTan0001392
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGGGTTAAATCTTTTAAACCCTAAAACAAAAACCATTCTTTCCTAGTTTCCTCTCACTCTCTGCCGTTTTCTACCGTCGCCGATGCCGAGAGACTCTTAAATATTCTCACTCGCTTGCCCAACTCGCCGCCGCCGATCCCGTTCTCCCTTTCTCCGGGAGACTCTTGTTTTGTACGACACCGAGAACTTCTTCAACTGCGAGGTGTATTGAGGTGAAACAGAAGAAGGGATTATGAGGAAGCTAAAATTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGCCACAGAGAAGCCCAAGTCATGCATCGCTATCACATCACCGGCCGAGACGATTACAAAAAGTAACTCCCTCTGATTTCTTCTAATTCCTTCTTTCTCTATCATTTTCTTTTCCTTACCGCTTTGTGTTTGATTTTATTTGATGTAGGTATTCGAGCTTGTGCCGGGGGGTTCAGAAGCTCGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACCGAGAAGCTCCTCGAAAAGTTGTGAGTTCTGCCTCCTTTTTTGTATAACCTCGCAGAAAGAAAATTTTCTTTTCATTTTACTGCCCAACTGTCTTATATATATATTTTTTTAATTTCAAAGATCCGATGAAATCTTATACCGCTGGTTCAAACTATTGTGTTTTGTGTTTCCCATGGATCTTGTGATTTTTGTCCACAATATTTGTGATGACAAGAAAGTGATGTTATGGCATATTGTAAGGCTGTTCATTTTGATCAGTGCTAACATCTCTTCTCTCTAGCCTAGAGGTTCTAACAATTCAAGAGCCAGTTTTGAGACTGAGATGTTGCATTTAAGATTAGAAGTGAAAAATGCGATGTAAAAAGATGTTAAAAAAAAGGAACGCTACATCAATTCCACATTTTGTCTTATAAAAGAACTCAACTAGCAATTTTAGTTGGTTTTCTTCTTCTATGCTTAATTATTGGGAAAAGCATGAATGAATTGCTGATCATTTTTCTCTTATTGCCCAATGAGCTCAGTGTATCTAGAATGAAAGGTCTAGTTTCTTAATTCTTCTAACCAATGACTTAGGCCCCGTTTGATAACCATTTTGTTTTTTGTTTTTTGTTTTTGAAAGTTAAGCTTATTTCCCTACAATGGAGATCATCTCCCTTAAGTAAGCATTTGAATTCTAAAAACAAAGTCAAGTTTTTGAAAACTACTTTTTTTAGTTTTCAAAAGTTAGTTTGGTTTGTTAAAATATAGGTACAAAATAGATAAGAAAACATACAAACTCATGGGTAGAAGTAGTATTTTTAGATTTAAATATCAAAAATTAAAAACTAAAAACAAAATGATTTTCAAACGGAGCCTTAGGTTCCCATTTTACTCCTCTACCTACCGTTTTAACGAAACTATCAACGTTCCCAGGACTTGTCAATACATTTTTGACCCCTTTTGTTTAACGCTTAAGACATGTTAAACCTAATATCCTTTGGCCAAATGTTTCAAGAACCAAATATTTTTGTTGAATTGTCCAAGATTGAATAATGGCACAAGAAACTATCGGTATTCCTCATGGGTACTCTATATTATATTTCTCTAATGCTGAAGCCATTTTAACTTGTCAGTATCTTTTGGCCCAATGTTTCAAGAATCCAAATCTCTTTTTAATATATTATCTGGAGTCTCAATGAATGATTGCGTTGTTAATCTGACTAAACTGGGGAATTAATAAAAGCAGATAATTTGAAATGTTATCATTTCAACTACTATTCATAACTTTTACCTGTATTACTCACACTTTATCCCCTGCTTCTCTCCTGAAAAAATATGACAGGTACAATATTGGCGTGATACCGACCCGACAGAGCTTGAATTTATGTGATCGTTTGTCAGTGTCATCCTTTTGCAGGTAAAATGAACGTCCTGCAGAAAAGAATTCATTTCTACATTGCAATGTTACATACTTTCTCTGCTAATATAACCAATACTAGTACTCTGAAAATAGTAATTCCAATCACAGACGGTTGTCGGCGCTGTTATTGCTTTTGCTGCATATTGTTTTTACATCAAGTCTGTTTTCCCCTTTCTCTCTGCAGACGAAGACTATCGACGGTGTTGGTACGTTTGAAGTTTGCTGAACACTTGAGGGAAGCTGTTACATACATCGAGCAAGGGCACATTAGAATTGGTCCAGAGACGGTTACCGATCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAGCTGGATGATTATGATGCCATGAACTGCTGAGATGAGTTATTTCCAAGTTTTGTTCCTTTTCATCACAACCTCTTGTATGAATTATTTCTCTGGCCCTCCTAATTGAAATGGCTAGTTAATGTAGCATCAGTTTTCTCCCTTATCTTCTAATCAATATATAGTTTTACATTGTTTTATATTACAAGCTTGATATCTCAGCTTCATGGATGTCTCTTTGTTGGGA

mRNA sequence

TTAGGGTTAAATCTTTTAAACCCTAAAACAAAAACCATTCTTTCCTAGTTTCCTCTCACTCTCTGCCGTTTTCTACCGTCGCCGATGCCGAGAGACTCTTAAATATTCTCACTCGCTTGCCCAACTCGCCGCCGCCGATCCCGTTCTCCCTTTCTCCGGGAGACTCTTGTTTTGTACGACACCGAGAACTTCTTCAACTGCGAGGTGTATTGAGGTGAAACAGAAGAAGGGATTATGAGGAAGCTAAAATTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGCCACAGAGAAGCCCAAGTCATGCATCGCTATCACATCACCGGCCGAGACGATTACAAAAAGTATTCGAGCTTGTGCCGGGGGGTTCAGAAGCTCGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACCGAGAAGCTCCTCGAAAAGTTGTACAATATTGGCGTGATACCGACCCGACAGAGCTTGAATTTATGTGATCGTTTGTCAGTGTCATCCTTTTGCAGACGAAGACTATCGACGGTGTTGGTACGTTTGAAGTTTGCTGAACACTTGAGGGAAGCTGTTACATACATCGAGCAAGGGCACATTAGAATTGGTCCAGAGACGGTTACCGATCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAGCTGGATGATTATGATGCCATGAACTGCTGAGATGAGTTATTTCCAAGTTTTGTTCCTTTTCATCACAACCTCTTGTATGAATTATTTCTCTGGCCCTCCTAATTGAAATGGCTAGTTAATGTAGCATCAGTTTTCTCCCTTATCTTCTAATCAATATATAGTTTTACATTGTTTTATATTACAAGCTTGATATCTCAGCTTCATGGATGTCTCTTTGTTGGGA

Coding sequence (CDS)

ATGAGGAAGCTAAAATTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGCCACAGAGAAGCCCAAGTCATGCATCGCTATCACATCACCGGCCGAGACGATTACAAAAAGTATTCGAGCTTGTGCCGGGGGGTTCAGAAGCTCGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACCGAGAAGCTCCTCGAAAAGTTGTACAATATTGGCGTGATACCGACCCGACAGAGCTTGAATTTATGTGATCGTTTGTCAGTGTCATCCTTTTGCAGACGAAGACTATCGACGGTGTTGGTACGTTTGAAGTTTGCTGAACACTTGAGGGAAGCTGTTACATACATCGAGCAAGGGCACATTAGAATTGGTCCAGAGACGGTTACCGATCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAGCTGGATGATTATGATGCCATGAACTGCTGA

Protein sequence

MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSMLKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMNC
Homology
[Close]
BLAST of Tan0001392 vs. ExPASy Swiss-Prot
Match: Q921Y2 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Imp3 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.8e-56
Identity = 102/180 (56.67%), Postives = 143/180 (79.44%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R++Y +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY +G++PTR SL LCD +S SSFCRRRL T+L++L+ A
Sbjct: 62  LRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           +HL+ AV ++EQGH+R+GP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Tan0001392 vs. ExPASy Swiss-Prot
Match: Q3T0M3 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-55
Identity = 102/180 (56.67%), Postives = 142/180 (78.89%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY +G++PTR S  LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           +HL+ AV ++EQGH+R+GP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Tan0001392 vs. ExPASy Swiss-Prot
Match: Q9NV31 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.3e-55
Identity = 102/180 (56.67%), Postives = 142/180 (78.89%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+D FR+  +  LL+KLY +G++PTR SL LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           +HL+ AV ++EQGH+R+GP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Tan0001392 vs. ExPASy Swiss-Prot
Match: P32899 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.7e-52
Identity = 94/180 (52.22%), Postives = 140/180 (77.78%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           +RKLK HEQKLLKKV+FLEWK++ GHR+ QVM  YHI  R+DY KY+ +C  +++L + L
Sbjct: 2   VRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKL 61

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKFA 120
             +   DPFR +  + LL+KLY +GV+ T+  + +L ++++VS+ CRRRL  ++ RLK A
Sbjct: 62  SLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMA 121

Query: 121 EHLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 180
           E +++AV +IEQGH+R+GP  + DPA+LVTRNMED++TWVD+SKIK+ +L+Y +++DD+D
Sbjct: 122 ETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181

[Close]
BLAST of Tan0001392 vs. ExPASy Swiss-Prot
Match: O13835 (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp3 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-47
Identity = 88/183 (48.09%), Postives = 136/183 (74.32%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKR-EGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSM 60
           MR LK HEQKLL+KV+FL +K  +  HR+  VM RYHI+ R++Y+KY+ +C   ++L   
Sbjct: 1   MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKF 120
           L  ++  DPFRL+    LLEKL+++G++P++  + ++ ++ +VS+ CRRRL  ++ +L+ 
Sbjct: 61  LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120

Query: 121 AEHLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDY 180
           ++ + EA   IEQGH+R+GP  +TDPA+LVTR++EDF+TW D+SKIKR + +YNDKLDDY
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDY 180

Query: 181 DAM 182
           D +
Sbjct: 181 DLL 183

[Close]
BLAST of Tan0001392 vs. NCBI nr
Match: KAA0041194.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >KAA0046137.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >TYK02423.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 362.8 bits (930), Expect = 1.7e-96
Identity = 178/183 (97.27%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIR+GPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Tan0001392 vs. NCBI nr
Match: XP_004153543.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 hypothetical protein Csa_015405 [Cucumis sativus])

HSP 1 Score: 362.5 bits (929), Expect = 2.2e-96
Identity = 177/183 (96.72%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIR+GPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Tan0001392 vs. NCBI nr
Match: XP_022955364.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_023526276.1 U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita pepo subsp. pepo] >KAG6581715.1 U3 small nucleolar ribonucleoprotein IMP3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018192.1 U3 small nucleolar ribonucleoprotein IMP3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 361.3 bits (926), Expect = 4.9e-96
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLVSML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIR+GPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 MNC 184
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of Tan0001392 vs. NCBI nr
Match: XP_038880355.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida])

HSP 1 Score: 360.9 bits (925), Expect = 6.4e-96
Identity = 176/183 (96.17%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVNML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMN+KDPFRLE+TEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNDKDPFRLEMTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIR+GPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Tan0001392 vs. NCBI nr
Match: TYK23826.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 360.5 bits (924), Expect = 8.4e-96
Identity = 177/183 (96.72%), Postives = 182/183 (99.45%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFR ELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRSELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIR+GPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Tan0001392 vs. ExPASy TrEMBL
Match: A0A5D3BRX0 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00220 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 8.2e-97
Identity = 178/183 (97.27%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIR+GPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Tan0001392 vs. ExPASy TrEMBL
Match: A0A0A0KZG3 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126420 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.1e-96
Identity = 177/183 (96.72%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIR+GPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Tan0001392 vs. ExPASy TrEMBL
Match: A0A6J1GW22 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 GN=LOC111457412 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.4e-96
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLVSML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIR+GPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 MNC 184
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of Tan0001392 vs. ExPASy TrEMBL
Match: A0A5D3DJI4 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00290 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96
Identity = 177/183 (96.72%), Postives = 182/183 (99.45%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFR ELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRSELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIR+GPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]
BLAST of Tan0001392 vs. ExPASy TrEMBL
Match: A0A6J1DLF0 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Momordica charantia OX=3673 GN=LOC111022212 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.3e-96
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MR+LKFHEQKLLKKVNFLEWKREGGHREAQVM RYH+TGRDDYKKYSSLCR VQKLVSML
Sbjct: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           HLREAVTYIEQGHIR+GPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180

Query: 181 MNC 184
           MNC
Sbjct: 181 MNC 183

[Close]
BLAST of Tan0001392 vs. TAIR 10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 293.9 bits (751), Expect = 9.0e-80
Identity = 139/181 (76.80%), Postives = 164/181 (90.61%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLK+HE+KL+KKVNFLEWKREG HRE ++ +RYH+  RDDYKKYS LCR VQKL +++
Sbjct: 1   MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIM 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+  DPFR+++T+ LLEKLYN+GVIPTR+SL L +RLSVSSFCRRRLSTVLV LKFAE
Sbjct: 61  KQMDPADPFRIQMTDMLLEKLYNMGVIPTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAE 120

Query: 121 HLREAVTYIEQGHIRIGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180
           H +EAVTYIEQGH+R+GPET+TDPAFLVTRNMEDFITWVDSSKIKRKVL+YND LDDYD 
Sbjct: 121 HHKEAVTYIEQGHVRVGPETITDPAFLVTRNMEDFITWVDSSKIKRKVLEYNDTLDDYDM 180

Query: 181 M 182
           +
Sbjct: 181 L 181

[Close]
BLAST of Tan0001392 vs. TAIR 10
Match: AT5G39850.1 (Ribosomal protein S4 )

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-06
Identity = 33/130 (25.38%), Postives = 66/130 (50.77%), Query Frame = 0 

Query: 20  WKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +       ++     L  ++EK+P R+   E LL 
Sbjct: 21  YEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLR 80

Query: 80  KLYNIGVI-PTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGP 139
           ++   G++  T+  L+    L+V +F  RRL T++ +   A+ +  A   I Q HIR+G 
Sbjct: 81  RMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGR 140

Query: 140 ETVTDPAFLV 149
           + V  P+F+V
Sbjct: 141 QLVNIPSFMV 150

[Close]
BLAST of Tan0001392 vs. TAIR 10
Match: AT5G15200.1 (Ribosomal protein S4 )

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-06
Identity = 34/144 (23.61%), Postives = 71/144 (49.31%), Query Frame = 0 

Query: 20  WKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +       ++     L  ++EK P R+   E LL 
Sbjct: 21  YEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLR 80

Query: 80  KLYNIGVIPTRQS-LNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRIGP 139
           ++   G++   Q+ L+    L+V +F  RRL T++ +   A+ +  +   I Q HIR+G 
Sbjct: 81  RMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGK 140

Query: 140 ETVTDPAFLVTRNMEDFITWVDSS 163
           + V  P+F+V  + +  I +  +S
Sbjct: 141 QLVNIPSFMVRLDSQKHIDFALTS 164

The following BLAST results are available for this feature:
BLAST of Tan0001392 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q921Y28.8e-5656.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Im... [more]
Q3T0M32.6e-5556.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 ... [more]
Q9NV313.3e-5556.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP... [more]
P328997.7e-5252.22U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (s... [more]
O138351.2e-4748.09U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (... [more]
BLAST of Tan0001392 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041194.11.7e-9697.27U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
XP_004153543.12.2e-9696.72U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 ... [more]
XP_022955364.14.9e-9696.72U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_02352... [more]
XP_038880355.16.4e-9696.17U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida][more]
TYK23826.18.4e-9696.72U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
BLAST of Tan0001392 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BRX08.2e-9797.27U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
A0A0A0KZG31.1e-9696.72S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126... [more]
A0A6J1GW222.4e-9696.72U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 ... [more]
A0A5D3DJI44.1e-9696.72U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
A0A6J1DLF05.3e-9697.27U3 small nucleolar ribonucleoprotein protein IMP3 OS=Momordica charantia OX=3673... [more]
BLAST of Tan0001392 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G15750.19.0e-8076.80Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [more]
AT5G39850.11.0e-0625.38Ribosomal protein S4 [more]
AT5G15200.11.7e-0623.61Ribosomal protein S4 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 55..118
e-value: 4.8E-8
score: 42.7
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 55..101
e-value: 3.0E-11
score: 42.8
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 55..123
e-value: 2.491E-9
score: 48.3998
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 55..130
e-value: 8.2E-8
score: 34.4
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 21..129
NoneNo IPR availablePROSITEPS50889S4coord: 55..121
score: 11.638736
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 46..123
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 21..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0001392.1Tan0001392.1mRNA
Tan0001392.2Tan0001392.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0034457 Mpp10 complex
cellular_component GO:0005840 ribosome
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding