Tan0001010.1 (mRNA) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCCAATGTGGTAGATAGAAATAATGGTCGGATTGTGGCAACTGCATCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAGTAGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGACGGTCTTGAACAGGGGCAAGGAAGAGGGATTCACGTGGACGTAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACCAAAATCTGGGCTATTGTCAACTCACTCAAGAATGGCGGAGTTAAACTTATTCTCGACAACAATGTTGATGATGCACCTAGGCCAAGTTACCAATAA ATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCCAATGTGGTAGATAGAAATAATGGTCGGATTGTGGCAACTGCATCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAGTAGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGACGGTCTTGAACAGGGGCAAGGAAGAGGGATTCACGTGGACGTAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACCAAAATCTGGGCTATTGTCAACTCACTCAAGAATGGCGGAGTTAAACTTATTCTCGACAACAATGTTGATGATGCACCTAGGCCAAGTTACCAATAA ATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCCAATGTGGTAGATAGAAATAATGGTCGGATTGTGGCAACTGCATCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAGTAGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGACGGTCTTGAACAGGGGCAAGGAAGAGGGATTCACGTGGACGTAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACCAAAATCTGGGCTATTGTCAACTCACTCAAGAATGGCGGAGTTAAACTTATTCTCGACAACAATGTTGATGATGCACCTAGGCCAAGTTACCAATAA MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVDDAPRPSYQ Homology
BLAST of Tan0001010.1 vs. ExPASy Swiss-Prot
Match: Q5P316 (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05 Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 0
BLAST of Tan0001010.1 vs. ExPASy Swiss-Prot
Match: Q5F5U3 (50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=rplR PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04 Identity = 31/108 (28.70%), Postives = 57/108 (52.78%), Query Frame = 0
BLAST of Tan0001010.1 vs. ExPASy Swiss-Prot
Match: A9M3V0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) OX=374833 GN=rplR PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04 Identity = 31/108 (28.70%), Postives = 57/108 (52.78%), Query Frame = 0
BLAST of Tan0001010.1 vs. ExPASy Swiss-Prot
Match: Q9JQQ6 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=rplR PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04 Identity = 31/108 (28.70%), Postives = 57/108 (52.78%), Query Frame = 0
BLAST of Tan0001010.1 vs. ExPASy Swiss-Prot
Match: Q7DDT0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX=122586 GN=rplR PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04 Identity = 31/108 (28.70%), Postives = 57/108 (52.78%), Query Frame = 0
BLAST of Tan0001010.1 vs. NCBI nr
Match: XP_038901007.1 (uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901009.1 uncharacterized protein LOC120088052 [Benincasa hispida]) HSP 1 Score: 240.0 bits (611), Expect = 1.2e-59 Identity = 123/128 (96.09%), Postives = 124/128 (96.88%), Query Frame = 0
BLAST of Tan0001010.1 vs. NCBI nr
Match: XP_023511782.1 (uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511784.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511785.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511786.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511787.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511788.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59 Identity = 122/128 (95.31%), Postives = 125/128 (97.66%), Query Frame = 0
BLAST of Tan0001010.1 vs. NCBI nr
Match: XP_022943852.1 (uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943854.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943855.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943856.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943857.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943858.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943860.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >KAG7010651.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 239.2 bits (609), Expect = 2.0e-59 Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0
BLAST of Tan0001010.1 vs. NCBI nr
Match: XP_022985582.1 (uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985584.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985585.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985586.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985588.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985589.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985590.1 uncharacterized protein LOC111483610 [Cucurbita maxima]) HSP 1 Score: 238.8 bits (608), Expect = 2.6e-59 Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0
BLAST of Tan0001010.1 vs. NCBI nr
Match: XP_022140774.1 (uncharacterized protein LOC111011356 [Momordica charantia] >XP_022140775.1 uncharacterized protein LOC111011356 [Momordica charantia]) HSP 1 Score: 235.0 bits (598), Expect = 3.7e-58 Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0
BLAST of Tan0001010.1 vs. ExPASy TrEMBL
Match: A0A6J1FXG0 (uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC111448460 PE=4 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 9.5e-60 Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0
BLAST of Tan0001010.1 vs. ExPASy TrEMBL
Match: A0A6J1JBQ5 (uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610 PE=4 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59 Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0
BLAST of Tan0001010.1 vs. ExPASy TrEMBL
Match: A0A6J1CGQ4 (uncharacterized protein LOC111011356 OS=Momordica charantia OX=3673 GN=LOC111011356 PE=4 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 1.8e-58 Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0
BLAST of Tan0001010.1 vs. ExPASy TrEMBL
Match: A0A5D3C2Z2 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00440 PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 9.9e-57 Identity = 117/129 (90.70%), Postives = 123/129 (95.35%), Query Frame = 0
BLAST of Tan0001010.1 vs. ExPASy TrEMBL
Match: A0A6P3ZI60 (uncharacterized protein LOC107411474 OS=Ziziphus jujuba OX=326968 GN=LOC107411474 PE=4 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 3.7e-56 Identity = 115/127 (90.55%), Postives = 123/127 (96.85%), Query Frame = 0
BLAST of Tan0001010.1 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein ) HSP 1 Score: 202.6 bits (514), Expect = 1.9e-52 Identity = 99/121 (81.82%), Postives = 113/121 (93.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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