Tan0001010 (gene) Snake gourd v1

Overview


Name	Tan0001010
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L18
Location	LG05: 1673268 .. 1673654 (-)
RNA-Seq Expression	Tan0001010
Synteny	Tan0001010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCCAATGTGGTAGATAGAAATAATGGTCGGATTGTGGCAACTGCATCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAGTAGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGACGGTCTTGAACAGGGGCAAGGAAGAGGGATTCACGTGGACGTAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACCAAAATCTGGGCTATTGTCAACTCACTCAAGAATGGCGGAGTTAAACTTATTCTCGACAACAATGTTGATGATGCACCTAGGCCAAGTTACCAATAA

mRNA sequence

ATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCCAATGTGGTAGATAGAAATAATGGTCGGATTGTGGCAACTGCATCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAGTAGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGACGGTCTTGAACAGGGGCAAGGAAGAGGGATTCACGTGGACGTAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACCAAAATCTGGGCTATTGTCAACTCACTCAAGAATGGCGGAGTTAAACTTATTCTCGACAACAATGTTGATGATGCACCTAGGCCAAGTTACCAATAA

Coding sequence (CDS)

ATGACAGTATTAAAGCGCTATGTGCTGCGATTATTCATATCTTTGAAGTACATAACAGCCAATGTGGTAGATAGAAATAATGGTCGGATTGTGGCAACTGCATCCACAGTTGAACACTCCATCAAGGGCTCACTTGAATGTGGCCGGTCTTGTAATGCTAAGGCAGCAGCAGTAGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGACGGTCTTGAACAGGGGCAAGGAAGAGGGATTCACGTGGACGTAAACAAGGAAATCGAGAAGAAAGGCTTCAAAAACCGCACCAAAATCTGGGCTATTGTCAACTCACTCAAGAATGGCGGAGTTAAACTTATTCTCGACAACAATGTTGATGATGCACCTAGGCCAAGTTACCAATAA

Protein sequence

MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVDDAPRPSYQ

Homology

[Close]

BLAST of Tan0001010 vs. ExPASy Swiss-Prot
Match: Q5P316 (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F +  +I A V+D +  R++A ASTVE  ++  L  G   N +AA VVG+++
Sbjct: 21  LKSVRLTVFRTNSHIYAQVIDGSGSRVLAAASTVEADVRSQLPNGG--NKQAAQVVGKLI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVK 113
           A R K  G+E               ++ GF+   ++ A+  + + GG+K
Sbjct: 81  AERAKAAGVEA-----------VAFDRAGFQYHGRVKALAEAAREGGLK 116

[Close]

BLAST of Tan0001010 vs. ExPASy Swiss-Prot
Match: Q5F5U3 (50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=rplR PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04
Identity = 31/108 (28.70%), Postives = 57/108 (52.78%), Query Frame = 0


Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGV 112
           A + K  G+E+              ++ GF+   ++ A+  + +  G+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of Tan0001010 vs. ExPASy Swiss-Prot
Match: A9M3V0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) OX=374833 GN=rplR PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04
Identity = 31/108 (28.70%), Postives = 57/108 (52.78%), Query Frame = 0


Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGV 112
           A + K  G+E+              ++ GF+   ++ A+  + +  G+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of Tan0001010 vs. ExPASy Swiss-Prot
Match: Q9JQQ6 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=rplR PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04
Identity = 31/108 (28.70%), Postives = 57/108 (52.78%), Query Frame = 0


Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGV 112
           A + K  G+E+              ++ GF+   ++ A+  + +  G+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of Tan0001010 vs. ExPASy Swiss-Prot
Match: Q7DDT0 (50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX=122586 GN=rplR PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.2e-04
Identity = 31/108 (28.70%), Postives = 57/108 (52.78%), Query Frame = 0


Query: 4   LKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVGEVL 63
           LK   L +F S  +I A V+     +++A AST+E  ++GSL+ G   N +AAA+VG+ +
Sbjct: 21  LKMVRLCVFRSNNHIYAQVISAEGDKVLAQASTLEAEVRGSLKSG--SNVEAAAIVGKRI 80

Query: 64  AMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGV 112
           A + K  G+E+              ++ GF+   ++ A+  + +  G+
Sbjct: 81  AEKAKAAGVEK-----------VAFDRSGFQYHGRVKALAEAARENGL 115

[Close]

BLAST of Tan0001010 vs. NCBI nr
Match: XP_038901007.1 (uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901009.1 uncharacterized protein LOC120088052 [Benincasa hispida])

HSP 1 Score: 240.0 bits (611), Expect = 1.2e-59
Identity = 123/128 (96.09%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH DVNKEIEKKGFKNRTKIWAIVN+LKN GVKLILDNNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADVNKEIEKKGFKNRTKIWAIVNALKNNGVKLILDNNVD 120

Query: 121 DAPRPSYQ 129
           DA R SYQ
Sbjct: 121 DASRSSYQ 128

[Close]

BLAST of Tan0001010 vs. NCBI nr
Match: XP_023511782.1 (uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511784.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511785.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511786.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511787.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511788.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59
Identity = 122/128 (95.31%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH+DVNKEIEKKGFKNRTKIWAIVNSLKN GVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DAPRPSYQ 129
           DA RPSY+
Sbjct: 121 DASRPSYE 128

[Close]

BLAST of Tan0001010 vs. NCBI nr
Match: XP_022943852.1 (uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943854.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943855.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943856.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943857.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943858.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943860.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >KAG7010651.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 239.2 bits (609), Expect = 2.0e-59
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIWAIVNSLKN GVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DAPRPSYQ 129
           DA RPSY+
Sbjct: 121 DASRPSYE 128

[Close]

BLAST of Tan0001010 vs. NCBI nr
Match: XP_022985582.1 (uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985584.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985585.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985586.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985588.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985589.1 uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985590.1 uncharacterized protein LOC111483610 [Cucurbita maxima])

HSP 1 Score: 238.8 bits (608), Expect = 2.6e-59
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIWAIVNSLKN GVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DAPRPSYQ 129
           DA RPSY+
Sbjct: 121 DAVRPSYE 128

[Close]

BLAST of Tan0001010 vs. NCBI nr
Match: XP_022140774.1 (uncharacterized protein LOC111011356 [Momordica charantia] >XP_022140775.1 uncharacterized protein LOC111011356 [Momordica charantia])

HSP 1 Score: 235.0 bits (598), Expect = 3.7e-58
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKG KN TKIWAIVNSL+NGGVKLILD+NVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIWAIVNSLRNGGVKLILDDNVD 120

Query: 121 DAPRPSYQ 129
            A RP YQ
Sbjct: 121 GASRPGYQ 128

[Close]

BLAST of Tan0001010 vs. ExPASy TrEMBL
Match: A0A6J1FXG0 (uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC111448460 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.5e-60
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIWAIVNSLKN GVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DAPRPSYQ 129
           DA RPSY+
Sbjct: 121 DASRPSYE 128

[Close]

BLAST of Tan0001010 vs. ExPASy TrEMBL
Match: A0A6J1JBQ5 (uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYV+RLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIH+D+NKEIEKKGFKNRTKIWAIVNSLKN GVKLILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

Query: 121 DAPRPSYQ 129
           DA RPSY+
Sbjct: 121 DAVRPSYE 128

[Close]

BLAST of Tan0001010 vs. ExPASy TrEMBL
Match: A0A6J1CGQ4 (uncharacterized protein LOC111011356 OS=Momordica charantia OX=3673 GN=LOC111011356 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.8e-58
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIKGSLECGRSCNAKAAAVVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVD 120
           EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKG KN TKIWAIVNSL+NGGVKLILD+NVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGLKNCTKIWAIVNSLRNGGVKLILDDNVD 120

Query: 121 DAPRPSYQ 129
            A RP YQ
Sbjct: 121 GASRPGYQ 128

[Close]

BLAST of Tan0001010 vs. ExPASy TrEMBL
Match: A0A5D3C2Z2 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00440 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.9e-57
Identity = 117/129 (90.70%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGR+VATASTVEHSIK SLECGRSCNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNV- 120
           EVLAMRLKVDGLEQGQGRGIH D+NKEIEKKGF+NRTKIWAIVNSLKN GVKLILDNNV 
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILDNNVD 120

Query: 121 DDAPRPSYQ 129
           DDA + +YQ
Sbjct: 121 DDAAQSNYQ 129

[Close]

BLAST of Tan0001010 vs. ExPASy TrEMBL
Match: A0A6P3ZI60 (uncharacterized protein LOC107411474 OS=Ziziphus jujuba OX=326968 GN=LOC107411474 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.7e-56
Identity = 115/127 (90.55%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLFISLKYITANVVDRNNGR VAT+STVEHSIKGSLECGRSCNAKAA+VVG
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRNVATSSTVEHSIKGSLECGRSCNAKAASVVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVD 120
           EVLAMRLKV+GLEQGQGRGIHVDVNKE+EKKGFKNRTKIWAIVNSLKN GVKLILD+N +
Sbjct: 61  EVLAMRLKVEGLEQGQGRGIHVDVNKEVEKKGFKNRTKIWAIVNSLKNNGVKLILDDNDE 120

Query: 121 DAPRPSY 128
           ++ RPSY
Sbjct: 121 NSSRPSY 127

[Close]

BLAST of Tan0001010 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 202.6 bits (514), Expect = 1.9e-52
Identity = 99/121 (81.82%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60
           MTVLKRYVLRLF+S+KYITANVVDRNNGRIV TASTVEH+IK SLECGR+CNAKAAA+VG
Sbjct: 1   MTVLKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVG 60

Query: 61  EVLAMRLKVDGLEQGQGRGIHVDVNKEIEKKGFKNRTKIWAIVNSLKNGGVKLILDNNVD 120
           EVLAMRLKV+GL+ GQGRGIH DV KEIEKKGFK+RTK+WA++NSL+N GV LILD++ D
Sbjct: 61  EVLAMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLILDDDDD 120

Query: 121 D 122
           D
Sbjct: 121 D 121

The following BLAST results are available for this feature:

BLAST of Tan0001010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5P316	2.9e-05	31.19	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rp...	[more]
Q5F5U3	3.2e-04	28.70	50S ribosomal protein L18 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090...	[more]
A9M3V0	3.2e-04	28.70	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup C (strain 053442) ...	[more]
Q9JQQ6	3.2e-04	28.70	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup A / serotype 4A (s...	[more]
Q7DDT0	3.2e-04	28.70	50S ribosomal protein L18 OS=Neisseria meningitidis serogroup B (strain MC58) OX...	[more]

BLAST of Tan0001010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901007.1	1.2e-59	96.09	uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 unchara...	[more]
XP_023511782.1	1.5e-59	95.31	uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783....	[more]
XP_022943852.1	2.0e-59	94.53	uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 unchar...	[more]
XP_022985582.1	2.6e-59	94.53	uncharacterized protein LOC111483610 [Cucurbita maxima] >XP_022985583.1 uncharac...	[more]
XP_022140774.1	3.7e-58	93.75	uncharacterized protein LOC111011356 [Momordica charantia] >XP_022140775.1 uncha...	[more]

BLAST of Tan0001010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXG0	9.5e-60	94.53	uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1JBQ5	1.2e-59	94.53	uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610...	[more]
A0A6J1CGQ4	1.8e-58	93.75	uncharacterized protein LOC111011356 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A5D3C2Z2	9.9e-57	90.70	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6P3ZI60	3.7e-56	90.55	uncharacterized protein LOC107411474 OS=Ziziphus jujuba OX=326968 GN=LOC10741147...	[more]

BLAST of Tan0001010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45020.1	1.9e-52	81.82	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 5..74 e-value: 1.9E-8 score: 34.6
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..122
None	No IPR available	GENE3D	3.30.420.100		coord: 1..113 e-value: 2.6E-18 score: 68.5
None	No IPR available	PANTHER	PTHR12899:SF12	OS09G0549700 PROTEIN	coord: 1..122
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 5..111 e-value: 4.65195E-17 score: 69.1059
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 4..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001010.1	Tan0001010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome