Spg036149.1 (mRNA) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCGCGGTTGCAATGCCAGTAGAGCTCAGGCTTTCTCGAACTAATCGAATCTACCGGCCTTCTGTAAGCCTTCTCTTTCCATCTTCAATTCTCCTTATCATCATTCCACTCATCGATTTCTCTCGCTCTTGCAATGTTCAGGAACATCTTCAAGGCCAAATCATCGTCAATTCTCGTTCCTCGATTTCCCACAGTGGAATTCGCCTCGCCGTCAATGGATCCGTCAATTTGCAGGTTCAATACTCTTTTGTTTTGTTTTGTTTTGCTTTGTTTCTTCAAAAATAGTTGCGTACTATGTATTTCAATCAAGTACTATCTGAGCTACCGAACACCTGTTAAGCAACAGAGTTGTACACGGAGGGTTATTGCTTTACCTGTAATTTTAACTCTGTTCTTTTTCTTCTTCCGTTGGATGCATTTTATGGTAAAAAGGTTCGTGGAGGTTCTGCCGGAGTTATTGAGTCGGTTTACGGTGTCATCAAGCCTATTTCGATAGTGTGAGTTGGCTTTCTTTACGATTTTTAAGTGAATTGTGTATTCTGTAGACATAGTAGTTATATGACTTTAGTTGCAAATTCATTTCCGACTTTTGAAGATGACAGCAATCTCTTTATTGTCTACATAATTGCCGATCACAAAAGTAGAAGTTTTCTTTCGTACTTGTTGTGACTTTTGAATAATACAAAATGAAATCAACTAGGATATGGTTAGGGATTGGGGAATTTAATGCTTCCACTAGTGATAACTATTACTGAGCTTCTCTTACTGTCTCCGACCTGAAATTTATATTGGACATGGTTCGCACATCGTTTTATAAACGAGATCAGTTATAGTTTATCCGACTTTTCTATTGATTTTGTTTCCTTCGCCCTCATAATGATAGGAATAGGACCATTGAGGTAAGGCCATCTGGAAAGCTTGCTTCAGGTACAACTGAGGTATAATTGCTGTTGAAAGCTATAAAATTTTAGATTTTTATATGAATCAATGTTATGAATGTTTATTCACTTAGATTGTTCAATTAAATTTGCTCAAATATTTAACTTCCTTATTAAATGATTGCATGTTTTGTATATGGTTATTTTGTGTGGTTGTACCCTTACGGCATGTCATATCTTCTTGACCCTGGATAACAGCCTCTTATGAATGGTGCATGTTGGAGTCGGATATCTTGTGTATTTATATAGTTGCTTGCTTATTTGTTGCCCGAACTTTCAGATGGTTAACTGAACTGATTCCCTCAAAATCTTTCCAGATTCCATTTTCCATAATTCTGAGACAGCCAAGTGAAAACTTCGGAAGATTTTATGAGACTTTTCATGGAACTGACATTAACATTCAGGTGAGTGTTGTGAATCTTTCTACTTTGCGTTTGACTATTCAGACTATGTGTAAATGATTTGGTGTTTTAGTTTTCACTCTTATTCACCTTCCCACTCCAAAAAGAAACGAGATTTCTCTTAACATGAACCTGATATTTTGTCAATTACTGAATAATACGATAGTATTTAGTAACTGTAGATATAAGTAGAGGATACCTACACAAGTCGTTATCTGCCACGATGGAGTTTATAGTTGAAAGTGATACAGGTATGATGTATTTGACACTTCAACATTATATATTTAACACAAGTAAATGAAAATAATTGTTTTTCTTTTGTTCTGTTCCTAGCTGATTTTCTTGAGCGGCCATTGTCGTCTGAGATGGTTATCTTTTACATCACTCAGGATACACAAAGGCATCCACTACTTCCTGAACTAAAATCAGGTTTTCATCATTGTTCCTTTTCTTTCATGTTTTATCTCTTTCAGGTGTGATTTATTTTATTCATTGTCATATGGGAATATTTGCATATAAGCCATCTATGGTAGCATATAGAAGAAGTAAACCATTGCTTATTTATTTTCTATTTTGTTTTATCTTTTTATATTTCAGTATCCTTTTGCTGATGAGAGATACTTCTAAATAGGTGGTTTTCGAGTGACTGGGAAAATGTCAACTCTGTGCTCTCTTTCAGATCCCATCACTGGTGAATTAATAGTTGAAGCATCAACAGTTCCCATTAATTCAATTGACATTCACTTGTGTCGTGTGGAATCAGTCATTCTTGGGGAGAGAATCATAACTGAAACATCTGTGATCCAAACTACCCAGGTATGAGACATCTCATCTTCTCTGTGTATATTAGTTTTTGCCTATACAAAAATTCATATAAAATTCGGATTTCTTTTTATTTTATCACCAGATAGCAGATGGAGATGTCTGTCGCAACATTACTCTGCCTATTTATGCTATACTACCCCGCCTTTTAACTTCCCCAACAGTCTTTGCTGGGTGAGTTACAAATACTATTACTGTTATACTACATTTTCAATCAAATACTATAATTGTGTGATGGGAAGTGAGGACACGCATGGAACCAAATATAGAAACCCACGCTATGTGAGACATCAAACGTCTGAAATAAGCACTTCATGATGCCACGTTCAGCTATTGGACTGGGATTTCTAAAGCATATGTACTAAATTAAGTTCGGCCTTTTCATTTCCCCATATGATTGTAAATTTGCAATGAATGTAATATTGTGTGTCGAATAATTTTATTTCGTTGATGATTGGAAACAACTTTGGTAATTTGTTCCTTCGAAGTTCTCTCTGTGATTGGTATCAGATCTTGTTGAAATGCGGTTTATCAGTTAATGGCGTGTCCACTTGTTTATTCCCTGTCATTCTCATCTGTGACTTGGCATTTGTATTCAGCAAATAACTTGTCCTGATTGTTTTTGACAGTCCATTTTCAATTGAATTCATAGTCTACATCGTTATAACCTTTCAGTCAGAGCTATCAAAATTACATCCCAAGACTGATCCAAGAACTCCAAGACTATGGGTGAGCATCTCTCTCTCGATCGGGTTGTATGAACTTTCTCTTGTTTAACCAATCTAACTTGTTCTCTTGTTTTCAATTCCAGCTTGCAATTGAATCTCTACCCCTTGAGCTTCTTCGAACTCATTGAGACGATTAGTTCAGCAGATCATTATACTGTATTTTGTTTGTCCTCTTGTGGATGATGTAAAATAAATCATATTGTACCTTCATCTTTTGGGTTCTGATTCTGGTTTTTCTTGGAGTGGGGGTTAATGGTCGGTGTAAAGTACCATGTTCAAGACCTAGTTTATGCTGATAATACTATGGTGTTATGTAGATTTTTTCCCCCTTTTTGTATATTTTTTCAGTATAT TTCGCGGTTGCAATGCCAGTAGAGCTCAGGCTTTCTCGAACTAATCGAATCTACCGGCCTTCTGTAAGCCTTCTCTTTCCATCTTCAATTCTCCTTATCATCATTCCACTCATCGATTTCTCTCGCTCTTGCAATGTTCAGGAACATCTTCAAGGCCAAATCATCGTCAATTCTCGTTCCTCGATTTCCCACAGTGGAATTCGCCTCGCCGTCAATGGATCCGTCAATTTGCAGGTTCGTGGAGGTTCTGCCGGAGTTATTGAGTCGGTTTACGGTGTCATCAAGCCTATTTCGATAGTGAATAGGACCATTGAGGTAAGGCCATCTGGAAAGCTTGCTTCAGGTACAACTGAGATTCCATTTTCCATAATTCTGAGACAGCCAAGTGAAAACTTCGGAAGATTTTATGAGACTTTTCATGGAACTGACATTAACATTCAGGTGAGTGTTGTGAATCTTTCTACTTTGCGTTTGACTATTCAGACTATGTTAAATGAAAATAATTGTTTTTCTTTTGTTCTGTTCCTAGCTGATTTTCTTGAGCGGCCATTGTCGTCTGAGATGGTTATCTTTTACATCACTCAGGATACACAAAGGCATCCACTACTTCCTGAACTAAAATCAGGTGGTTTTCGAGTGACTGGGAAAATGTCAACTCTGTGCTCTCTTTCAGATCCCATCACTGGTGAATTAATAGTTGAAGCATCAACAGTTCCCATTAATTCAATTGACATTCACTTGTGTCGTGTGGAATCAGTCATTCTTGGGGAGAGAATCATAACTGAAACATCTGTGATCCAAACTACCCAGATAGCAGATGGAGATGTCTGTCGCAACATTACTCTGCCTATTTATGCTATACTACCCCGCCTTTTAACTTCCCCAACAGTCTTTGCTGGCTTGCAATTGAATCTCTACCCCTTGAGCTTCTTCGAACTCATTGAGACGATTAGTTCAGCAGATCATTATACTGTATTTTGTTTGTCCTCTTGTGGATGA TTCGCGGTTGCAATGCCAGTAGAGCTCAGGCTTTCTCGAACTAATCGAATCTACCGGCCTTCTGTAAGCCTTCTCTTTCCATCTTCAATTCTCCTTATCATCATTCCACTCATCGATTTCTCTCGCTCTTGCAATGTTCAGGAACATCTTCAAGGCCAAATCATCGTCAATTCTCGTTCCTCGATTTCCCACAGTGGAATTCGCCTCGCCGTCAATGGATCCGTCAATTTGCAGGTTCGTGGAGGTTCTGCCGGAGTTATTGAGTCGGTTTACGGTGTCATCAAGCCTATTTCGATAGTGAATAGGACCATTGAGGTAAGGCCATCTGGAAAGCTTGCTTCAGGTACAACTGAGATTCCATTTTCCATAATTCTGAGACAGCCAAGTGAAAACTTCGGAAGATTTTATGAGACTTTTCATGGAACTGACATTAACATTCAGGTGAGTGTTGTGAATCTTTCTACTTTGCGTTTGACTATTCAGACTATGTTAAATGAAAATAATTGTTTTTCTTTTGTTCTGTTCCTAGCTGATTTTCTTGAGCGGCCATTGTCGTCTGAGATGGTTATCTTTTACATCACTCAGGATACACAAAGGCATCCACTACTTCCTGAACTAAAATCAGGTGGTTTTCGAGTGACTGGGAAAATGTCAACTCTGTGCTCTCTTTCAGATCCCATCACTGGTGAATTAATAGTTGAAGCATCAACAGTTCCCATTAATTCAATTGACATTCACTTGTGTCGTGTGGAATCAGTCATTCTTGGGGAGAGAATCATAACTGAAACATCTGTGATCCAAACTACCCAGATAGCAGATGGAGATGTCTGTCGCAACATTACTCTGCCTATTTATGCTATACTACCCCGCCTTTTAACTTCCCCAACAGTCTTTGCTGGCTTGCAATTGAATCTCTACCCCTTGAGCTTCTTCGAACTCATTGAGACGATTAGTTCAGCAGATCATTATACTGTATTTTGTTTGTCCTCTTGTGGATGA FAVAMPVELRLSRTNRIYRPSVSLLFPSSILLIIIPLIDFSRSCNVQEHLQGQIIVNSRSSISHSGIRLAVNGSVNLQVRGGSAGVIESVYGVIKPISIVNRTIEVRPSGKLASGTTEIPFSIILRQPSENFGRFYETFHGTDINIQVSVVNLSTLRLTIQTMLNENNCFSFVLFLADFLERPLSSEMVIFYITQDTQRHPLLPELKSGGFRVTGKMSTLCSLSDPITGELIVEASTVPINSIDIHLCRVESVILGERIITETSVIQTTQIADGDVCRNITLPIYAILPRLLTSPTVFAGLQLNLYPLSFFELIETISSADHYTVFCLSSCG Homology
BLAST of Spg036149.1 vs. NCBI nr
Match: XP_038895697.1 (vacuolar protein sorting-associated protein 26C isoform X1 [Benincasa hispida]) HSP 1 Score: 417.5 bits (1072), Expect = 1.0e-112 Identity = 231/311 (74.28%), Postives = 247/311 (79.42%), Query Frame = 0
BLAST of Spg036149.1 vs. NCBI nr
Match: XP_022924207.1 (Down syndrome critical region protein 3 homolog isoform X1 [Cucurbita moschata] >XP_023520407.1 Down syndrome critical region protein 3 homolog isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 415.6 bits (1067), Expect = 4.0e-112 Identity = 228/296 (77.03%), Postives = 240/296 (81.08%), Query Frame = 0
BLAST of Spg036149.1 vs. NCBI nr
Match: XP_022924208.1 (Down syndrome critical region protein 3 homolog isoform X2 [Cucurbita moschata] >XP_023520408.1 Down syndrome critical region protein 3 homolog isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 415.6 bits (1067), Expect = 4.0e-112 Identity = 228/296 (77.03%), Postives = 240/296 (81.08%), Query Frame = 0
BLAST of Spg036149.1 vs. NCBI nr
Match: XP_022137704.1 (Down syndrome critical region protein 3 homolog isoform X1 [Momordica charantia]) HSP 1 Score: 414.1 bits (1063), Expect = 1.2e-111 Identity = 229/296 (77.36%), Postives = 238/296 (80.41%), Query Frame = 0
BLAST of Spg036149.1 vs. NCBI nr
Match: XP_004137506.1 (vacuolar protein sorting-associated protein 26C [Cucumis sativus] >KGN64179.1 hypothetical protein Csa_013429 [Cucumis sativus]) HSP 1 Score: 413.7 bits (1062), Expect = 1.5e-111 Identity = 226/294 (76.87%), Postives = 239/294 (81.29%), Query Frame = 0
BLAST of Spg036149.1 vs. ExPASy Swiss-Prot
Match: O35075 (Vacuolar protein sorting-associated protein 26C OS=Mus musculus OX=10090 GN=Vps26c PE=1 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 2.6e-37 Identity = 99/278 (35.61%), Postives = 150/278 (53.96%), Query Frame = 0
BLAST of Spg036149.1 vs. ExPASy Swiss-Prot
Match: O14972 (Vacuolar protein sorting-associated protein 26C OS=Homo sapiens OX=9606 GN=VPS26C PE=1 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 2.8e-36 Identity = 102/282 (36.17%), Postives = 148/282 (52.48%), Query Frame = 0
BLAST of Spg036149.1 vs. ExPASy Swiss-Prot
Match: Q5RF33 (Vacuolar protein sorting-associated protein 26C OS=Pongo abelii OX=9601 GN=VPS26C PE=2 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 4.8e-36 Identity = 102/282 (36.17%), Postives = 147/282 (52.13%), Query Frame = 0
BLAST of Spg036149.1 vs. ExPASy Swiss-Prot
Match: Q54DI8 (Vacuolar protein sorting-associated protein 26C OS=Dictyostelium discoideum OX=44689 GN=vps26c PE=3 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 9.8e-29 Identity = 84/294 (28.57%), Postives = 151/294 (51.36%), Query Frame = 0
BLAST of Spg036149.1 vs. ExPASy TrEMBL
Match: A0A6J1EBR4 (Down syndrome critical region protein 3 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431725 PE=3 SV=1) HSP 1 Score: 415.6 bits (1067), Expect = 1.9e-112 Identity = 228/296 (77.03%), Postives = 240/296 (81.08%), Query Frame = 0
BLAST of Spg036149.1 vs. ExPASy TrEMBL
Match: A0A6J1E8A3 (Down syndrome critical region protein 3 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431725 PE=3 SV=1) HSP 1 Score: 415.6 bits (1067), Expect = 1.9e-112 Identity = 228/296 (77.03%), Postives = 240/296 (81.08%), Query Frame = 0
BLAST of Spg036149.1 vs. ExPASy TrEMBL
Match: A0A6J1C810 (Down syndrome critical region protein 3 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009075 PE=3 SV=1) HSP 1 Score: 414.1 bits (1063), Expect = 5.6e-112 Identity = 229/296 (77.36%), Postives = 238/296 (80.41%), Query Frame = 0
BLAST of Spg036149.1 vs. ExPASy TrEMBL
Match: A0A0A0LT45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042860 PE=3 SV=1) HSP 1 Score: 413.7 bits (1062), Expect = 7.3e-112 Identity = 226/294 (76.87%), Postives = 239/294 (81.29%), Query Frame = 0
BLAST of Spg036149.1 vs. ExPASy TrEMBL
Match: A0A6J1KJN3 (Down syndrome critical region protein 3 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495832 PE=3 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 1.2e-111 Identity = 227/296 (76.69%), Postives = 238/296 (80.41%), Query Frame = 0
BLAST of Spg036149.1 vs. TAIR 10
Match: AT1G48550.2 (Vacuolar protein sorting-associated protein 26 ) HSP 1 Score: 330.1 bits (845), Expect = 2.0e-90 Identity = 179/300 (59.67%), Postives = 217/300 (72.33%), Query Frame = 0
BLAST of Spg036149.1 vs. TAIR 10
Match: AT1G48550.1 (Vacuolar protein sorting-associated protein 26 ) HSP 1 Score: 326.2 bits (835), Expect = 3.0e-89 Identity = 178/300 (59.33%), Postives = 217/300 (72.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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