Spg035218.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg035218.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold4: 24201341 .. 24202390 (+)
Sequence length1050
RNA-Seq ExpressionSpg035218.1
SyntenySpg035218.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAACGAGAGCAAGAAAAGAGAGAGATAATGAGGAAGAGGAGGTGCCTATTACCCCCGAAGCACCGAAAGTTAAGGCAAAGAAAAAGAAGACACCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAGAGGGTTGAGGATCAAGAAATAGTGCAGAAGGTAGTCGAGGAGGTTGCTACCAAGGCAGTTGGGGAAGGCAATCCGAAGGAACCTGAAGGACAAAACCCAGAGCAGACTGACCCGATAGTTGCGGATACAAAGGAAGTTCGAGAAGAAAATGCAGAGGAAGTTCAAGAAAAACAGACTGAGGATGCGCAAGCAGTACGGGCAGAGGTTGCGCCTGAAAGAGGTAATGAGCAAGAACAGGAGGCTCGAGTAGAGGTGATCATGCCGGAAGTACCAAAACGTCGCCGCGTGAAGCGAAAAGCTGGACATGTCAAGGTAGTTCGAACTGATACTCCCTCGCCGCCAACCACTGACTCTGAGAGAGAAAATGCAGAAAGAGAGGAACAGGAGAAGAAAGAGGTCGAGGACAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGGTTGCTCAAGCAAAGGGCAGACAAAGGCAAGAGTGTTGCTGCAGCATCGGAGGAACCTGACGAGACAGAGGAACCAAGGTTGCCGTACAATCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGTTGAGCTGCTGAAGAGAGACTTCCTGTTCGAGAGAGGATTTGGTGGTGATCTTCCACATTTTCTTAGGGCCGGCATTACGAACCACGGTTGGGAATTATTCTGTTCCAAGCCTGAATCTGTGAACGCGCAGGTAGTGCGCGAATTTTATGCAAATATTGACGAGGAAGAAGGTTTCCAAGTTATTGTTCGAGGAGTAGAAGTTGACTGGAGTCTTGGTGTCATTAACGCACTGTATAACCTTCAGGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAATTAAGCGATGCTATTCGGGAAGTTGGTGTTGAAGGGGCGTAG

mRNA sequence

ATGGCGAAAACGAGAGCAAGAAAAGAGAGAGATAATGAGGAAGAGGAGGTGCCTATTACCCCCGAAGCACCGAAAGTTAAGGCAAAGAAAAAGAAGACACCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAGAGGGTTGAGGATCAAGAAATAGTGCAGAAGGTAGTCGAGGAGGTTGCTACCAAGGCAGTTGGGGAAGGCAATCCGAAGGAACCTGAAGGACAAAACCCAGAGCAGACTGACCCGATAGTTGCGGATACAAAGGAAGTTCGAGAAGAAAATGCAGAGGAAGTTCAAGAAAAACAGACTGAGGATGCGCAAGCAGTACGGGCAGAGGTTGCGCCTGAAAGAGGTAATGAGCAAGAACAGGAGGCTCGAGTAGAGGTGATCATGCCGGAAGTACCAAAACGTCGCCGCGTGAAGCGAAAAGCTGGACATGTCAAGGTAGTTCGAACTGATACTCCCTCGCCGCCAACCACTGACTCTGAGAGAGAAAATGCAGAAAGAGAGGAACAGGAGAAGAAAGAGGTCGAGGACAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGGTTGCTCAAGCAAAGGGCAGACAAAGGCAAGAGTGTTGCTGCAGCATCGGAGGAACCTGACGAGACAGAGGAACCAAGGTTGCCGTACAATCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGTTGAGCTGCTGAAGAGAGACTTCCTGTTCGAGAGAGGATTTGGTGGTGATCTTCCACATTTTCTTAGGGCCGGCATTACGAACCACGGTTGGGAATTATTCTGTTCCAAGCCTGAATCTGTGAACGCGCAGGTAGTGCGCGAATTTTATGCAAATATTGACGAGGAAGAAGGTTTCCAAGTTATTGTTCGAGGAGTAGAAGTTGACTGGAGTCTTGGTGTCATTAACGCACTGTATAACCTTCAGGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAATTAAGCGATGCTATTCGGGAAGTTGGTGTTGAAGGGGCGTAG

Coding sequence (CDS)

ATGGCGAAAACGAGAGCAAGAAAAGAGAGAGATAATGAGGAAGAGGAGGTGCCTATTACCCCCGAAGCACCGAAAGTTAAGGCAAAGAAAAAGAAGACACCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAGAGGGTTGAGGATCAAGAAATAGTGCAGAAGGTAGTCGAGGAGGTTGCTACCAAGGCAGTTGGGGAAGGCAATCCGAAGGAACCTGAAGGACAAAACCCAGAGCAGACTGACCCGATAGTTGCGGATACAAAGGAAGTTCGAGAAGAAAATGCAGAGGAAGTTCAAGAAAAACAGACTGAGGATGCGCAAGCAGTACGGGCAGAGGTTGCGCCTGAAAGAGGTAATGAGCAAGAACAGGAGGCTCGAGTAGAGGTGATCATGCCGGAAGTACCAAAACGTCGCCGCGTGAAGCGAAAAGCTGGACATGTCAAGGTAGTTCGAACTGATACTCCCTCGCCGCCAACCACTGACTCTGAGAGAGAAAATGCAGAAAGAGAGGAACAGGAGAAGAAAGAGGTCGAGGACAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGGTTGCTCAAGCAAAGGGCAGACAAAGGCAAGAGTGTTGCTGCAGCATCGGAGGAACCTGACGAGACAGAGGAACCAAGGTTGCCGTACAATCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGTTGAGCTGCTGAAGAGAGACTTCCTGTTCGAGAGAGGATTTGGTGGTGATCTTCCACATTTTCTTAGGGCCGGCATTACGAACCACGGTTGGGAATTATTCTGTTCCAAGCCTGAATCTGTGAACGCGCAGGTAGTGCGCGAATTTTATGCAAATATTGACGAGGAAGAAGGTTTCCAAGTTATTGTTCGAGGAGTAGAAGTTGACTGGAGTCTTGGTGTCATTAACGCACTGTATAACCTTCAGGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAATTAAGCGATGCTATTCGGGAAGTTGGTGTTGAAGGGGCGTAG

Protein sequence

MAKTRARKERDNEEEEVPITPEAPKVKAKKKKTPEEKEAKRRRRQQRVEDQEIVQKVVEEVATKAVGEGNPKEPEGQNPEQTDPIVADTKEVREENAEEVQEKQTEDAQAVRAEVAPERGNEQEQEARVEVIMPEVPKRRRVKRKAGHVKVVRTDTPSPPTTDSERENAEREEQEKKEVEDKAREEAEKKAEEERLLKQRADKGKSVAAASEEPDETEEPRLPYNRFVNNLARAKYVELLKRDFLFERGFGGDLPHFLRAGITNHGWELFCSKPESVNAQVVREFYANIDEEEGFQVIVRGVEVDWSLGVINALYNLQDFPHAGYNEMVVAPSNEQLSDAIREVGVEGA
Homology
[Close]
BLAST of Spg035218.1 vs. ExPASy TrEMBL
Match: A0A4Q3ENY7 (Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_09925 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-08
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = 0 

Query: 227 FVNNLARAKYVELLKRDFLFERGFGGDLPHFLRAGITN----HGWELFCSKPE-SVNAQV 286
           F +  A  +Y  L++R  +FERG        + + I N      W  FC+ PE   N  +
Sbjct: 8   FTSKAAEERYDILVQRSPIFERGLKVSSTTPIGSQINNTIEGFSWRKFCATPEHKANVTL 67

Query: 287 VREFYANIDEEEGFQVIVRGVEVDWSLGVINALYNLQD--FPHAGYNEMVVAPSNEQLSD 346
           + EFYAN+ + E   V VRGV+VD S+G INAL    D  F + GY + +  P+ +++  
Sbjct: 68  MYEFYANLPDHEDDVVTVRGVDVDCSVGAINALLGTPDIEFENEGYRQWLRNPNLDEMLS 127

The following BLAST results are available for this feature:
BLAST of Spg035218.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg035218.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg035218.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4Q3ENY72.7e-0833.33Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_099... [more]
BLAST of Spg035218.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 162..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..137

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg035218Spg035218gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg035218.1-cdsSpg035218.1-cds-scaffold4:24201341..24202390CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg035218.1Spg035218.1-proteinpolypeptide