Spg035218 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg035218
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold4: 24201341 .. 24202390 (+)
RNA-Seq Expression	Spg035218
Synteny	Spg035218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAACGAGAGCAAGAAAAGAGAGAGATAATGAGGAAGAGGAGGTGCCTATTACCCCCGAAGCACCGAAAGTTAAGGCAAAGAAAAAGAAGACACCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAGAGGGTTGAGGATCAAGAAATAGTGCAGAAGGTAGTCGAGGAGGTTGCTACCAAGGCAGTTGGGGAAGGCAATCCGAAGGAACCTGAAGGACAAAACCCAGAGCAGACTGACCCGATAGTTGCGGATACAAAGGAAGTTCGAGAAGAAAATGCAGAGGAAGTTCAAGAAAAACAGACTGAGGATGCGCAAGCAGTACGGGCAGAGGTTGCGCCTGAAAGAGGTAATGAGCAAGAACAGGAGGCTCGAGTAGAGGTGATCATGCCGGAAGTACCAAAACGTCGCCGCGTGAAGCGAAAAGCTGGACATGTCAAGGTAGTTCGAACTGATACTCCCTCGCCGCCAACCACTGACTCTGAGAGAGAAAATGCAGAAAGAGAGGAACAGGAGAAGAAAGAGGTCGAGGACAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGGTTGCTCAAGCAAAGGGCAGACAAAGGCAAGAGTGTTGCTGCAGCATCGGAGGAACCTGACGAGACAGAGGAACCAAGGTTGCCGTACAATCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGTTGAGCTGCTGAAGAGAGACTTCCTGTTCGAGAGAGGATTTGGTGGTGATCTTCCACATTTTCTTAGGGCCGGCATTACGAACCACGGTTGGGAATTATTCTGTTCCAAGCCTGAATCTGTGAACGCGCAGGTAGTGCGCGAATTTTATGCAAATATTGACGAGGAAGAAGGTTTCCAAGTTATTGTTCGAGGAGTAGAAGTTGACTGGAGTCTTGGTGTCATTAACGCACTGTATAACCTTCAGGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAATTAAGCGATGCTATTCGGGAAGTTGGTGTTGAAGGGGCGTAG

mRNA sequence

ATGGCGAAAACGAGAGCAAGAAAAGAGAGAGATAATGAGGAAGAGGAGGTGCCTATTACCCCCGAAGCACCGAAAGTTAAGGCAAAGAAAAAGAAGACACCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAGAGGGTTGAGGATCAAGAAATAGTGCAGAAGGTAGTCGAGGAGGTTGCTACCAAGGCAGTTGGGGAAGGCAATCCGAAGGAACCTGAAGGACAAAACCCAGAGCAGACTGACCCGATAGTTGCGGATACAAAGGAAGTTCGAGAAGAAAATGCAGAGGAAGTTCAAGAAAAACAGACTGAGGATGCGCAAGCAGTACGGGCAGAGGTTGCGCCTGAAAGAGGTAATGAGCAAGAACAGGAGGCTCGAGTAGAGGTGATCATGCCGGAAGTACCAAAACGTCGCCGCGTGAAGCGAAAAGCTGGACATGTCAAGGTAGTTCGAACTGATACTCCCTCGCCGCCAACCACTGACTCTGAGAGAGAAAATGCAGAAAGAGAGGAACAGGAGAAGAAAGAGGTCGAGGACAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGGTTGCTCAAGCAAAGGGCAGACAAAGGCAAGAGTGTTGCTGCAGCATCGGAGGAACCTGACGAGACAGAGGAACCAAGGTTGCCGTACAATCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGTTGAGCTGCTGAAGAGAGACTTCCTGTTCGAGAGAGGATTTGGTGGTGATCTTCCACATTTTCTTAGGGCCGGCATTACGAACCACGGTTGGGAATTATTCTGTTCCAAGCCTGAATCTGTGAACGCGCAGGTAGTGCGCGAATTTTATGCAAATATTGACGAGGAAGAAGGTTTCCAAGTTATTGTTCGAGGAGTAGAAGTTGACTGGAGTCTTGGTGTCATTAACGCACTGTATAACCTTCAGGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAATTAAGCGATGCTATTCGGGAAGTTGGTGTTGAAGGGGCGTAG

Coding sequence (CDS)

ATGGCGAAAACGAGAGCAAGAAAAGAGAGAGATAATGAGGAAGAGGAGGTGCCTATTACCCCCGAAGCACCGAAAGTTAAGGCAAAGAAAAAGAAGACACCAGAAGAGAAAGAAGCTAAGAGGAGAAGAAGACAGCAGAGGGTTGAGGATCAAGAAATAGTGCAGAAGGTAGTCGAGGAGGTTGCTACCAAGGCAGTTGGGGAAGGCAATCCGAAGGAACCTGAAGGACAAAACCCAGAGCAGACTGACCCGATAGTTGCGGATACAAAGGAAGTTCGAGAAGAAAATGCAGAGGAAGTTCAAGAAAAACAGACTGAGGATGCGCAAGCAGTACGGGCAGAGGTTGCGCCTGAAAGAGGTAATGAGCAAGAACAGGAGGCTCGAGTAGAGGTGATCATGCCGGAAGTACCAAAACGTCGCCGCGTGAAGCGAAAAGCTGGACATGTCAAGGTAGTTCGAACTGATACTCCCTCGCCGCCAACCACTGACTCTGAGAGAGAAAATGCAGAAAGAGAGGAACAGGAGAAGAAAGAGGTCGAGGACAAAGCAAGAGAGGAAGCAGAGAAAAAGGCTGAAGAAGAAAGGTTGCTCAAGCAAAGGGCAGACAAAGGCAAGAGTGTTGCTGCAGCATCGGAGGAACCTGACGAGACAGAGGAACCAAGGTTGCCGTACAATCGCTTCGTCAACAATCTTGCCAGAGCAAAATATGTTGAGCTGCTGAAGAGAGACTTCCTGTTCGAGAGAGGATTTGGTGGTGATCTTCCACATTTTCTTAGGGCCGGCATTACGAACCACGGTTGGGAATTATTCTGTTCCAAGCCTGAATCTGTGAACGCGCAGGTAGTGCGCGAATTTTATGCAAATATTGACGAGGAAGAAGGTTTCCAAGTTATTGTTCGAGGAGTAGAAGTTGACTGGAGTCTTGGTGTCATTAACGCACTGTATAACCTTCAGGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGCGCCATCTAATGAGCAATTAAGCGATGCTATTCGGGAAGTTGGTGTTGAAGGGGCGTAG

Protein sequence

MAKTRARKERDNEEEEVPITPEAPKVKAKKKKTPEEKEAKRRRRQQRVEDQEIVQKVVEEVATKAVGEGNPKEPEGQNPEQTDPIVADTKEVREENAEEVQEKQTEDAQAVRAEVAPERGNEQEQEARVEVIMPEVPKRRRVKRKAGHVKVVRTDTPSPPTTDSERENAEREEQEKKEVEDKAREEAEKKAEEERLLKQRADKGKSVAAASEEPDETEEPRLPYNRFVNNLARAKYVELLKRDFLFERGFGGDLPHFLRAGITNHGWELFCSKPESVNAQVVREFYANIDEEEGFQVIVRGVEVDWSLGVINALYNLQDFPHAGYNEMVVAPSNEQLSDAIREVGVEGA

Homology

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BLAST of Spg035218 vs. ExPASy TrEMBL
Match: A0A4Q3ENY7 (Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_09925 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-08
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = 0


Query: 227 FVNNLARAKYVELLKRDFLFERGFGGDLPHFLRAGITN----HGWELFCSKPE-SVNAQV 286
           F +  A  +Y  L++R  +FERG        + + I N      W  FC+ PE   N  +
Sbjct: 8   FTSKAAEERYDILVQRSPIFERGLKVSSTTPIGSQINNTIEGFSWRKFCATPEHKANVTL 67

Query: 287 VREFYANIDEEEGFQVIVRGVEVDWSLGVINALYNLQD--FPHAGYNEMVVAPSNEQLSD 346
           + EFYAN+ + E   V VRGV+VD S+G INAL    D  F + GY + +  P+ +++  
Sbjct: 68  MYEFYANLPDHEDDVVTVRGVDVDCSVGAINALLGTPDIEFENEGYRQWLRNPNLDEMLS 127

The following BLAST results are available for this feature:

BLAST of Spg035218 vs.


Match Name	E-value	Identity	Description

BLAST of Spg035218 vs.


Match Name	E-value	Identity	Description

BLAST of Spg035218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Q3ENY7	2.7e-08	33.33	Uncharacterized protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_099...	[more]

BLAST of Spg035218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 162..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg035218.1	Spg035218.1	mRNA