Spg034574.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg034574.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CRIB domain-containing protein
Location	scaffold4: 11559759 .. 11560277 (+)
Sequence length	432
RNA-Seq Expression	Spg034574.1
Synteny	Spg034574.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAAAATGAATTCTTCCAAACGCCTTCGTCGTGTAGTGGTCATAGAATCTTGTCCTGAAGCAGGTATAGAGAGTCAAACCCCATTAGAATCTAACCCTGATCAAGAGGATATCAATAACGATACAGAAGTTAACTTGACTGTTAATGAAGAAGTTGATGTGGAAGGTACGTATAAATGAAATTTGTTTTACAATAAAAATGAAATTTACCTACATTACTATATTATACTTTATGTATTGTTTTTTTAAATAGATTCATCGGGAGTGCGTAGAAAACGTGGTAAGACACATAAGTCTGATGTGTGGAACTTACCTATGGGTCATAAGATAGTTATTGAATTTAATAACTCAGACCAACCTATAATGGGTGGTTCAAGTATATTGGGAAACTTCTTAGGAACAATTGCAAGCAATTGTCAACTTTGTCCACTGAACTACGATGACTGGAGAAAAGTACTGAAAATGTACAACGATGAAATTTGGGGTGTGTTAGAGGCAAGCAATCAAATATTGTTCTGA

mRNA sequence

TGTAAAATGAATTCTTCCAAACGCCTTCGTCGTGTAGTGGTCATAGAATCTTGTCCTGAAGCAGGTATAGAGAGTCAAACCCCATTAGAATCTAACCCTGATCAAGAGGATATCAATAACGATACAGAAGTTAACTTGACTGTTAATGAAGAAGTTGATGTGGAAGATTCATCGGGAGTGCGTAGAAAACGTGGTAAGACACATAAGTCTGATGTGTGGAACTTACCTATGGGTCATAAGATAGTTATTGAATTTAATAACTCAGACCAACCTATAATGGGTGGTTCAAGTATATTGGGAAACTTCTTAGGAACAATTGCAAGCAATTGTCAACTTTGTCCACTGAACTACGATGACTGGAGAAAAGTACTGAAAATGTACAACGATGAAATTTGGGGTGTGTTAGAGGCAAGCAATCAAATATTGTTCTGA

Coding sequence (CDS)

TGTAAAATGAATTCTTCCAAACGCCTTCGTCGTGTAGTGGTCATAGAATCTTGTCCTGAAGCAGGTATAGAGAGTCAAACCCCATTAGAATCTAACCCTGATCAAGAGGATATCAATAACGATACAGAAGTTAACTTGACTGTTAATGAAGAAGTTGATGTGGAAGATTCATCGGGAGTGCGTAGAAAACGTGGTAAGACACATAAGTCTGATGTGTGGAACTTACCTATGGGTCATAAGATAGTTATTGAATTTAATAACTCAGACCAACCTATAATGGGTGGTTCAAGTATATTGGGAAACTTCTTAGGAACAATTGCAAGCAATTGTCAACTTTGTCCACTGAACTACGATGACTGGAGAAAAGTACTGAAAATGTACAACGATGAAATTTGGGGTGTGTTAGAGGCAAGCAATCAAATATTGTTCTGA

Protein sequence

CKMNSSKRLRRVVVIESCPEAGIESQTPLESNPDQEDINNDTEVNLTVNEEVDVEDSSGVRRKRGKTHKSDVWNLPMGHKIVIEFNNSDQPIMGGSSILGNFLGTIASNCQLCPLNYDDWRKVLKMYNDEIWGVLEASNQILF

Homology

[Close]

BLAST of Spg034574.1 vs. NCBI nr
Match: OAY62811.1 (hypothetical protein ACMD2_09523 [Ananas comosus])

HSP 1 Score: 88.6 bits (218), Expect = 4.8e-14
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 28  PLESNPDQEDINNDTEVNLTVN----EEVDVEDSSGVRRKRGKTHKSDVWNLPMGHKIVI 87
           P  ++  Q  I+   E ++ +N    +EVD+ED +G +R+RGKT  +D+WNLP GH++V+
Sbjct: 20  PQSNSNQQAQIDEHAETSININQEEGDEVDIEDENG-QRRRGKTKLADLWNLPRGHRVVV 79

Query: 88  EFNNSDQPIMGGSSILGNFLGTIASNCQLCPLNYDDWRKVLK 126
             N   QP+     +LG FLGTIA N  +C L++ DWR V K
Sbjct: 80  NCNTQGQPVGNEGGLLGQFLGTIARNGGICTLSHKDWRYVKK 120

[Close]

BLAST of Spg034574.1 vs. NCBI nr
Match: XP_038699673.1 (uncharacterized protein LOC119996968 [Tripterygium wilfordii])

HSP 1 Score: 88.2 bits (217), Expect = 6.3e-14
Identity = 56/142 (39.44%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 8   RLRRVVVIESCPEAGIESQTPLESN-------------PDQEDINNDTEVNLTVNEEVDV 67
           R RR V I S  EAG   Q    SN             P Q +  N+ E    V+  VD 
Sbjct: 5   RRRRRVTILSEEEAGQHVQASTNSNNGAHIEENGDSQVPSQTEATNEVE----VDGIVDT 64

Query: 68  EDSSGVRRKRGKTHKSDVWNLPMGHKIVIEFNNSDQPIMGGSSILGNFLGTIASNCQLCP 127
            D+ GV+R RG+T  +DVW LP   +I++ FN+  QPI     +LG FL +IA N +LC 
Sbjct: 65  IDTQGVKRTRGRTRLADVWELPADQRIIVPFNDLGQPIKAAGGLLGQFLDSIAKNGELCS 124

Query: 128 LNYDDWRKVLKMYNDEIWGVLE 137
           L  DDWRK  K    E+  V+E
Sbjct: 125 LAKDDWRKFTKPEIQEMLKVVE 142

[Close]

BLAST of Spg034574.1 vs. NCBI nr
Match: XP_023914558.1 (uncharacterized protein LOC112026107 [Quercus suber])

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-13
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 35  QEDINNDTEVNLTVNEEVDVEDSSGVRRKRGKTHKSDVWNLPMGHKIVIEFNNSDQPIMG 94
           Q D N+D E   + N EV + D +GVR  RG T  S++WNL  G K+ + FN   QP+  
Sbjct: 56  QADDNSDEE---STNIEVQITDHAGVRSTRGITRMSEIWNLTDGKKVQLSFNGCFQPVER 115

Query: 95  GSSILGNFLGTIASNCQLCPLNYDDWRKVLKMYNDEIWGVLEASNQI 142
              I   F+GT+A    LCP+NY +WRKV   Y ++ W ++E+   I
Sbjct: 116 EGIIFNRFVGTVARKPNLCPINYFNWRKVPNDYKEKCWTIIESKFHI 159

[Close]

BLAST of Spg034574.1 vs. NCBI nr
Match: XP_038973456.1 (uncharacterized protein LOC120105239 isoform X1 [Phoenix dactylifera] >XP_038984139.1 uncharacterized protein LOC120111342 [Phoenix dactylifera])

HSP 1 Score: 85.1 bits (209), Expect = 5.3e-13
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 50  EEVDVEDSSG-VRRKRGKTHKSDVWNLPMGHKIVIEFNNSDQPIMGGSSILGNFLGTIAS 109
           ++VDV D  G VRR RG T   DVW+LP   KIV+  N   QPI   +SIL  FLG++A 
Sbjct: 50  DDVDVLDGLGRVRRTRGPTRARDVWSLPEDEKIVVHCNELGQPIKNAASILSTFLGSVAR 109

Query: 110 NCQLCPLNYDDWRKVLKMYNDEIWGVLE 137
             QLCPLNY  W ++L  Y  E+  V+E
Sbjct: 110 KGQLCPLNYTKWNEMLPSYKVELLRVVE 137

[Close]

BLAST of Spg034574.1 vs. NCBI nr
Match: XP_038974726.1 (uncharacterized protein LOC120105986 [Phoenix dactylifera])

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-13
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 50  EEVDVEDSSG-VRRKRGKTHKSDVWNLPMGHKIVIEFNNSDQPIMGGSSILGNFLGTIAS 109
           ++VDV D  G VRR RG T   DVW+LP   KIV+  N   QPI   +SIL  FLG++A 
Sbjct: 50  DDVDVLDGLGRVRRTRGPTRARDVWSLPEDEKIVVHCNELGQPINNAASILSTFLGSVAR 109

Query: 110 NCQLCPLNYDDWRKVLKMYNDEIWGVLE 137
             QLCPLNY  W ++L  Y  E+  V+E
Sbjct: 110 KGQLCPLNYTKWNEMLPSYKVELLRVVE 137

[Close]

BLAST of Spg034574.1 vs. ExPASy TrEMBL
Match: A0A2N9FJL4 (CRIB domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15230 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-15
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 26   QTPLESNPDQEDINNDTEVNLTVNEEVDVEDSSGVRRKRGKTHKSDVWNLPMGHKIVIEF 85
            Q+  +   D +D   D E      +EV+  DS G+R  RG T  SDVWNLP+G KIV+ F
Sbjct: 979  QSQCQDQVDDDDF--DEESTDDDVDEVETIDSKGIRNTRGITRMSDVWNLPVGKKIVLNF 1038

Query: 86   NNSDQPIMGGSSILGNFLGTIASNCQLCPLNYDDWRKVLKMYNDEIWGVLEA 138
            N + QP+   + I   F+GT+A    LCP+ Y  WRK+   Y +E W ++EA
Sbjct: 1039 NGAFQPVDKEAGIFSRFIGTVARKPHLCPIKYLTWRKLPMDYKEECWKIIEA 1088

[Close]

BLAST of Spg034574.1 vs. ExPASy TrEMBL
Match: A0A199UDI9 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_09523 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-14
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 28  PLESNPDQEDINNDTEVNLTVN----EEVDVEDSSGVRRKRGKTHKSDVWNLPMGHKIVI 87
           P  ++  Q  I+   E ++ +N    +EVD+ED +G +R+RGKT  +D+WNLP GH++V+
Sbjct: 20  PQSNSNQQAQIDEHAETSININQEEGDEVDIEDENG-QRRRGKTKLADLWNLPRGHRVVV 79

Query: 88  EFNNSDQPIMGGSSILGNFLGTIASNCQLCPLNYDDWRKVLK 126
             N   QP+     +LG FLGTIA N  +C L++ DWR V K
Sbjct: 80  NCNTQGQPVGNEGGLLGQFLGTIARNGGICTLSHKDWRYVKK 120

[Close]

BLAST of Spg034574.1 vs. ExPASy TrEMBL
Match: A0A6P5F3B2 (uncharacterized protein LOC109709952 isoform X1 OS=Ananas comosus OX=4615 GN=LOC109709952 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.5e-13
Identity = 42/126 (33.33%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 12  VVVIESCPEAGIESQTPLESNPDQEDINNDTEVNLTVNEEVDVEDSSGVRRKRGKTHKSD 71
           V +   CP+   E   P + + +  ++++D +   +   E+ +   S  R KRG T  SD
Sbjct: 15  VEIPTQCPKQTREFSLPHQPDAETHEMDDDVDQVDSNEVEICITGGSSARGKRGVTRMSD 74

Query: 72  VWNLPMGHKIVIEFNNSDQPIMGGSSILGNFLGTIASNCQLCPLNYDDWRKVLKMYNDEI 131
           +WNLP   +I++++NN  QPI    SIL  F+GT+     L P++Y  WRK+   Y +  
Sbjct: 75  IWNLPSNQRIMLKYNNYFQPIDKEGSILHRFMGTVVRKPNLAPIDYLSWRKMDVKYKNSC 134

Query: 132 WGVLEA 138
           W VLE+
Sbjct: 135 WEVLES 140

[Close]

BLAST of Spg034574.1 vs. ExPASy TrEMBL
Match: A0A6P5F3C8 (uncharacterized protein LOC109709952 isoform X3 OS=Ananas comosus OX=4615 GN=LOC109709952 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.5e-13
Identity = 42/126 (33.33%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 12  VVVIESCPEAGIESQTPLESNPDQEDINNDTEVNLTVNEEVDVEDSSGVRRKRGKTHKSD 71
           V +   CP+   E   P + + +  ++++D +   +   E+ +   S  R KRG T  SD
Sbjct: 15  VEIPTQCPKQTREFSLPHQPDAETHEMDDDVDQVDSNEVEICITGGSSARGKRGVTRMSD 74

Query: 72  VWNLPMGHKIVIEFNNSDQPIMGGSSILGNFLGTIASNCQLCPLNYDDWRKVLKMYNDEI 131
           +WNLP   +I++++NN  QPI    SIL  F+GT+     L P++Y  WRK+   Y +  
Sbjct: 75  IWNLPSNQRIMLKYNNYFQPIDKEGSILHRFMGTVVRKPNLAPIDYLSWRKMDVKYKNSC 134

Query: 132 WGVLEA 138
           W VLE+
Sbjct: 135 WEVLES 140

[Close]

BLAST of Spg034574.1 vs. ExPASy TrEMBL
Match: A0A6P5EWJ4 (uncharacterized protein LOC109709952 isoform X2 OS=Ananas comosus OX=4615 GN=LOC109709952 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.5e-13
Identity = 42/126 (33.33%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 12  VVVIESCPEAGIESQTPLESNPDQEDINNDTEVNLTVNEEVDVEDSSGVRRKRGKTHKSD 71
           V +   CP+   E   P + + +  ++++D +   +   E+ +   S  R KRG T  SD
Sbjct: 15  VEIPTQCPKQTREFSLPHQPDAETHEMDDDVDQVDSNEVEICITGGSSARGKRGVTRMSD 74

Query: 72  VWNLPMGHKIVIEFNNSDQPIMGGSSILGNFLGTIASNCQLCPLNYDDWRKVLKMYNDEI 131
           +WNLP   +I++++NN  QPI    SIL  F+GT+     L P++Y  WRK+   Y +  
Sbjct: 75  IWNLPSNQRIMLKYNNYFQPIDKEGSILHRFMGTVVRKPNLAPIDYLSWRKMDVKYKNSC 134

Query: 132 WGVLEA 138
           W VLE+
Sbjct: 135 WEVLES 140

[Close]

BLAST of Spg034574.1 vs. TAIR 10
Match: AT1G40087.1 (Plant transposase (Ptta/En/Spm family) )

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-08
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 47  TVNEEVDVEDSSGVRRKRGKTHKSDVWNLPMGHKIVIEFNN-SDQPIMGGSSILGNFLGT 106
           T   +++V D  G    +  T K DVW +   H++++ F+  ++QPI     +LG++L  
Sbjct: 33  TFKWKIEVIDVDGNIEGKMMTSK-DVW-IMQNHRVIVHFDEYTNQPIGDSGGLLGSWLSQ 92

Query: 107 IASNCQLCPLNYDDWRKVLKMYNDEIWGVLEA 138
           ++++  L P+NY DWR V     D  W V+++
Sbjct: 93  LSNDIMLLPINYTDWRLVSPHIKDRAWAVIQS 122

The following BLAST results are available for this feature:

BLAST of Spg034574.1 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY62811.1	4.8e-14	42.16	hypothetical protein ACMD2_09523 [Ananas comosus]	[more]
XP_038699673.1	6.3e-14	39.44	uncharacterized protein LOC119996968 [Tripterygium wilfordii]	[more]
XP_023914558.1	1.1e-13	40.19	uncharacterized protein LOC112026107 [Quercus suber]	[more]
XP_038973456.1	5.3e-13	48.86	uncharacterized protein LOC120105239 isoform X1 [Phoenix dactylifera] >XP_038984...	[more]
XP_038974726.1	6.9e-13	48.86	uncharacterized protein LOC120105986 [Phoenix dactylifera]	[more]

BLAST of Spg034574.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg034574.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9FJL4	2.1e-15	41.07	CRIB domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15230 PE=...	[more]
A0A199UDI9	2.3e-14	42.16	Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_09523 PE=4 SV=1	[more]
A0A6P5F3B2	7.5e-13	33.33	uncharacterized protein LOC109709952 isoform X1 OS=Ananas comosus OX=4615 GN=LOC...	[more]
A0A6P5F3C8	7.5e-13	33.33	uncharacterized protein LOC109709952 isoform X3 OS=Ananas comosus OX=4615 GN=LOC...	[more]
A0A6P5EWJ4	7.5e-13	33.33	uncharacterized protein LOC109709952 isoform X2 OS=Ananas comosus OX=4615 GN=LOC...	[more]

BLAST of Spg034574.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G40087.1	3.2e-08	30.43	Plant transposase (Ptta/En/Spm family)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..44
None	No IPR available	PANTHER	PTHR33144	OS10G0409366 PROTEIN-RELATED	coord: 30..133

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg034574	Spg034574	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg034574.1-cds	Spg034574.1-cds-scaffold4:11559759..11559924	CDS
Spg034574.1-cds	Spg034574.1-cds-scaffold4:11560012..11560277	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg034574.1	Spg034574.1-protein	polypeptide