Spg033496.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg033496.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Legume-specific protein
Location	scaffold5: 1764692 .. 1764967 (-)
Sequence length	276
RNA-Seq Expression	Spg033496.1
Synteny	Spg033496.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTTTAATTCCCTTCGTTTACAAAGCGATCGTTCAATACAAGAATGAAAAACAAGTGCCGCCGATTCGCTCTTGGCTCGGCGACTCGCCGTCGGCGTCCTACATCAGACTTCCGAGCGGCGATTCCGGCCGATTTCAGTTCCAATCCGACGCCTCCTATTCCGCCGCGTCACCTTCGAAATCAGCCACTTCCACCGCCACCCAGATTCTCGTTTCTACCGGAGTTCAGTCGCCGCTCCGCCATCTGACGCCTCGTCGGGTCGCCGCCTGA

mRNA sequence

ATGGAAGGTTTAATTCCCTTCGTTTACAAAGCGATCGTTCAATACAAGAATGAAAAACAAGTGCCGCCGATTCGCTCTTGGCTCGGCGACTCGCCGTCGGCGTCCTACATCAGACTTCCGAGCGGCGATTCCGGCCGATTTCAGTTCCAATCCGACGCCTCCTATTCCGCCGCGTCACCTTCGAAATCAGCCACTTCCACCGCCACCCAGATTCTCGTTTCTACCGGAGTTCAGTCGCCGCTCCGCCATCTGACGCCTCGTCGGGTCGCCGCCTGA

Coding sequence (CDS)

ATGGAAGGTTTAATTCCCTTCGTTTACAAAGCGATCGTTCAATACAAGAATGAAAAACAAGTGCCGCCGATTCGCTCTTGGCTCGGCGACTCGCCGTCGGCGTCCTACATCAGACTTCCGAGCGGCGATTCCGGCCGATTTCAGTTCCAATCCGACGCCTCCTATTCCGCCGCGTCACCTTCGAAATCAGCCACTTCCACCGCCACCCAGATTCTCGTTTCTACCGGAGTTCAGTCGCCGCTCCGCCATCTGACGCCTCGTCGGGTCGCCGCCTGA

Protein sequence

MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQFQSDASYSAASPSKSATSTATQILVSTGVQSPLRHLTPRRVAA

Homology

[Close]

BLAST of Spg033496.1 vs. NCBI nr
Match: KAG6596392.1 (hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150.6 bits (379), Expect = 6.5e-33
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQFQSDASYSAASP 60
          MEGLIPFVY+AIV YKN+KQVPPIRSWL DSPSASYIRLPSGDSGRF FQSD SY+A SP
Sbjct: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLTDSPSASYIRLPSGDSGRFLFQSDGSYTATSP 60

Query: 61 SKSATSTATQILVSTGVQSPLRHLTPRRVAA 92
          SKS +STATQILV+TGVQSPLR L P RVAA
Sbjct: 61 SKSVSSTATQILVATGVQSPLRQLAPSRVAA 91

[Close]

BLAST of Spg033496.1 vs. NCBI nr
Match: KAG7027938.1 (hypothetical protein SDJN02_09117, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 4.2e-32
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQFQSDASYSAASP 60
          MEGLIPFVY+AIV YKN+KQVPPIRSWL DSPSASYIRLPSGDSGRF FQS  SY+A SP
Sbjct: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLTDSPSASYIRLPSGDSGRFLFQSGGSYTATSP 60

Query: 61 SKSATSTATQILVSTGVQSPLRHLTPRRVAA 92
          SKS +STATQILV+TGVQSPLR L P RVAA
Sbjct: 61 SKSVSSTATQILVATGVQSPLRQLAPSRVAA 91

[Close]

BLAST of Spg033496.1 vs. NCBI nr
Match: KAG7017269.1 (hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQFQSDASYSAASP 60
          MEG+IPFVYKAIVQYKNEKQVP IRSWL DSPS SYIRLPSGDSGRFQ   D SYSAASP
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ---DGSYSAASP 60

Query: 61 -SKSATSTATQILVSTGVQSPLRHLTPRRVAA 92
           SKSA+ST TQIL+STGVQSPLRHLTPRRVAA
Sbjct: 61 SSKSASSTTTQILISTGVQSPLRHLTPRRVAA 89

[Close]

BLAST of Spg033496.1 vs. NCBI nr
Match: KAA0044116.1 (legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.6e-31
Identity = 79/91 (86.81%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQFQSDASYSAASP 60
          MEGLIPFVYKAIVQYKNEKQVP IRSWL DSPS SYIRLPSGDSGRFQFQSDAS S+ SP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 SKSATSTATQILVSTGVQSPLRHLTPRRVAA 92
          + S  +TATQILVSTGVQSPLRHLT RRVAA
Sbjct: 61 TSS--TTATQILVSTGVQSPLRHLTTRRVAA 89

[Close]

BLAST of Spg033496.1 vs. NCBI nr
Match: KAG6580521.1 (hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31
Identity = 79/92 (85.87%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQFQSDASYSAASP 60
          MEG+IPFVYKAIVQYKNEKQVP IRSWL DSPS SYIRLPSGDSGRFQ   D SYSAASP
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ---DGSYSAASP 60

Query: 61 -SKSATSTATQILVSTGVQSPLRHLTPRRVAA 92
           SKSA+ST TQIL+STGVQSPLRHLTPRRV A
Sbjct: 61 SSKSASSTTTQILISTGVQSPLRHLTPRRVVA 89

[Close]

BLAST of Spg033496.1 vs. ExPASy TrEMBL
Match: A0A5D3DNC7 (Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001410 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.8e-32
Identity = 79/91 (86.81%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQFQSDASYSAASP 60
          MEGLIPFVYKAIVQYKNEKQVP IRSWL DSPS SYIRLPSGDSGRFQFQSDAS S+ SP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 SKSATSTATQILVSTGVQSPLRHLTPRRVAA 92
          + S  +TATQILVSTGVQSPLRHLT RRVAA
Sbjct: 61 TSS--TTATQILVSTGVQSPLRHLTTRRVAA 89

[Close]

BLAST of Spg033496.1 vs. ExPASy TrEMBL
Match: A0A0A0LD26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.0e-31
Identity = 78/91 (85.71%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQFQSDASYSAASP 60
          MEGLIPFVYKAIVQYKNEKQVP IRSWL DSPS SYIRLPSGDSGRFQFQSDAS S+ SP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 SKSATSTATQILVSTGVQSPLRHLTPRRVAA 92
          +   +ST TQILVSTGVQSPLRHLT RRVAA
Sbjct: 61 T---SSTTTQILVSTGVQSPLRHLTTRRVAA 88

[Close]

BLAST of Spg033496.1 vs. ExPASy TrEMBL
Match: K7MT87 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.8e-21
Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQFQSDA-SYSAAS 60
          MEGLIPFVYKAI+QYK +K   PI SWL +SPS SY+RLP+GDSGRFQ Q+ A S+SAAS
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 PSKS--ATSTATQILVSTGVQSPLRHLTPRRVAA 92
          PS +   +S+ATQI+VS+GVQSP + LT RR+AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRRIAA 94

[Close]

BLAST of Spg033496.1 vs. ExPASy TrEMBL
Match: A0A0B2P904 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQFQSDA-SYSAAS 60
          MEGLIPFVYKAI+QYK +K   PI SWL +SPS SY+RLP+GDSGRFQ Q+ A S+SAAS
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 PSKS--ATSTATQILVSTGVQSPLRHLTPRRVAA 92
          PS +   +S+ATQI+VS+GVQSP + LT R +AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRPIAA 94

[Close]

BLAST of Spg033496.1 vs. ExPASy TrEMBL
Match: A0A6J1AT90 (uncharacterized protein LOC110420657 OS=Herrania umbratica OX=108875 GN=LOC110420657 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.0e-20
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQ------FQSD-A 60
          MEGLIPFVY+AIVQYKN ++   + +W  +SPSASY+RLP+GDSGRFQ      FQSD  
Sbjct: 1  MEGLIPFVYRAIVQYKNGRE-GVLATWFSESPSASYMRLPTGDSGRFQVSDKQVFQSDYG 60

Query: 61 SYSAASPSKSATSTATQILVSTGVQSPLRHLTPRRVAA 92
           +SA+SPS  ATS+ T+I++STGVQSP+  LT RRV A
Sbjct: 61 DFSASSPSSMATSSTTKIILSTGVQSPVCRLTSRRVVA 97

[Close]

BLAST of Spg033496.1 vs. TAIR 10
Match: AT2G37750.1 (unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQ--YKNEKQVPPIRSWLGDSPSASYIRLPSGDSGRFQFQSDASYSA- 60
          MEGLIP VYKA++Q  Y NE Q            S+ Y+RLP GDSGRF  +SD   S  
Sbjct: 1  MEGLIPLVYKAVMQIRYGNESQ---------QLSSSYYVRLP-GDSGRF-VRSDLDVSGP 60

Query: 61 ---ASPSKSATSTATQILVSTGVQSPL 82
             +S   S++++ T   V  GVQSP+
Sbjct: 61 GSNSSNRASSSTSTTTFAVYAGVQSPV 76

[Close]

BLAST of Spg033496.1 vs. TAIR 10
Match: AT5G02090.1 (unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 5.2e-04
Identity = 32/83 (38.55%), Postives = 44/83 (53.01%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPPIRSWLGDSPSAS--YIRLPSGDSGRF------QFQSD 60
          MEGLIPF+YKAIV YK E     +      SPS +  Y+RLP   S RF      +F +D
Sbjct: 1  MEGLIPFLYKAIVMYKREGSFSSVLLSDHHSPSNAGYYMRLPGDSSSRFRTSDLRRFGTD 60

Query: 61 -----ASYSAASPSKSATSTATQ 71
                +  ++SPS+ +T   T+
Sbjct: 61 RFGMLETTPSSSPSRVSTRNITK 83

The following BLAST results are available for this feature:

BLAST of Spg033496.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596392.1	6.5e-33	84.62	hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027938.1	4.2e-32	83.52	hypothetical protein SDJN02_09117, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7017269.1	7.2e-32	86.96	hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0044116.1	1.6e-31	86.81	legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific p...	[more]
KAG6580521.1	2.1e-31	85.87	hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg033496.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg033496.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNC7	7.8e-32	86.81	Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LD26	3.0e-31	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1	[more]
K7MT87	2.8e-21	67.02	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1	[more]
A0A0B2P904	1.8e-20	65.96	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1	[more]
A0A6J1AT90	9.0e-20	61.22	uncharacterized protein LOC110420657 OS=Herrania umbratica OX=108875 GN=LOC11042...	[more]

BLAST of Spg033496.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37750.1	1.2e-05	43.68	unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bact...	[more]
AT5G02090.1	5.2e-04	38.55	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34670	EXPRESSED PROTEIN	coord: 1..91
None	No IPR available	PANTHER	PTHR34670:SF10	LEGUME-SPECIFIC PROTEIN	coord: 1..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg033496	Spg033496	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg033496.1-cds	Spg033496.1-cds-scaffold5:1764692..1764967	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg033496.1	Spg033496.1-protein	polypeptide