Spg031012.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg031012.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 23119171 .. 23123993 (-)
Sequence length	561
RNA-Seq Expression	Spg031012.1
Synteny	Spg031012.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCGACAGGGGCGATAGCGTCGCGACGCTATTGGCAGATTTCCTATTTAATGTTCTTTTCATGCTACGACCAAGGAGAGTCCAATTTGAGAGATTTTAGCCCTAATTTCGACTAGAGACCTTCTGTGGGAGCTGAAGCAAGGACAAGGAGCGGGAATCTAACTTGGAAGCGTGGAGATCGTGACGGGGACGTGCCAGTTTCGACGACTTTGAGTGTTTCCTTTCCTTTTCCTTTTCTTTAGTTAGATTTAATGGTTTTTTCATGCTTAGTTGATCTTGTAACGCCATGTATGAGTAGCTAAGCTTGTTAATTAGGGATTGATGTAGTCTTTTTAGTTTATGGATTGATTTATGGGATGATTTGTGAAATGGTTATTATGTTTGCAATCTTAATTTAATGCTTTCAATTAATTGGCCACTAGTTGAATGTTTTAAGTGTTGAGTTTTGCTCGGGAGAGGGGATTTAGCGTAGACTTTATTAAGATTGCATGACTAAAGTTTATGTTCTAAGCTCGTGACGGAATTTAGAGTAACTTTAGAATTGGTCAAAAAGAACTAAATGCCTTGCATGTTAATGAACTTAGATAGGGATATCAAGTTGGTTAATTTGCATGAGAATCAATTATACTCGGGAGAGGTAGTTGTGATTAAAGGTTCTTAGGCTCATAAATCCATTGTGCGTTATAACTCATTCCCTAAAATCAATCATAGACTAAATTGGCAAAATCAATTCCCTAAGTGTTTTTTCAATTGAATCTCCGTTGTTTGTTTGCATTGATCTAGTTTTCTATCATTCACTACTTTTTGGTCCCTAAATAAAATTGAACAAGAATATTCATGGTAATTGATTTAACTTAAAAATCCAATCCAGAGAACGACACTCGATTTTACGATCACTTTATTATTACTTGACCCGTGCGCTTGCGGTAGGAAAATTCCACATCAAGTTTTTGAGTTGAGATCTAAGCCATCATCTTCTTCCTTCATCTCTTCCTCTCTCTTTACCCGATACCTTTCTTCTCCACCATCTCTTCATCATCTTCTTCTTCTATTTTTCTCCCCCACCGTGAGCCTAAGAGATCGCCAGTCGCCGTTTGTCTTTCTTCAATCGTCCCTAGTGTGTAGTAGCTCGCGGCAGTAGGCTTCGTCGACAGCGTTCGCAAGATTTTTGGTGGTGATAGTAGGAAGCTTTCAGGCGCGGTAAGCAATGGGGTTCTCGTTCCGACGATTCCTCAACCCAATGTCTCCTCCTTGGTAGTCAAGCACCAGAACCAGTCGTTGCAGCCCCTCTCAAATGCGACAACATCGTCTTCTTTGCGTTTTTCAGAGATCCAGCGCGTGAGGGTTTGTTTCTGGCCATTTCAGTTCAAACGATAGTGTTTTGAAGTCATCTAGAGTTGTTCAGCTCGTGGGTTACCTCAGATCTGTGTGGTTTAGTCGGTCAGTAGCTTCTTCTTTGAGTTTATGGTGATTCGAGGAGTGGGTTTTCGAATTCCAACGAGTTCAAGTGTGGGTAAGCACGTTTCAGCAAGCTTTCATGAAATTTTCATTGATTACAGTGTTATAATCGAATACTGATAATGCTCACTTACGTGCGTTATTTAGCCTTAAAAACCTAGGTAATTGTTTGGAAAGCAAGGACTTTGTATTTAAAATCTTATCATTTCAAGTCAATTTAGCAAAAGTTGTAGAATCATGAGGAAAATCTTAGAAATATAGAATTTAAGCTTAATTCTTAAAGTGTACAAAAAGAGATTATTTTTGTAAGAATTTATCCAAGTAATGTACAAAAAGGCTAGTGTGTGGCATCCATCAAATTTTAGAGCAACTTCAACTTTCAGCCAGTAGGTAGGAGTATGCTGAGAGGCAAGCTTAGACCTACTGGACTTATGCTAATAGGAGGGATGCCACCCTAAGGAGGGCGCTGCAATCAAATTTTTCAAAACCATATCAGGCCTTCCCAGTTTTTCCCGATGACTTGTTTAATCCTTGGATCCCTCCACCACCAGTTGAAAGAGAGGAAGAAGAGGAGGATGATTCGGGTCAGGAAGATTGATGAAGGAAAAAAAAGTTGGGCGAGCGTTATTTTTGTTCAAATATTTTTGTTGCTCACATATTCTTGACCCCAGTTTCTTTTGATTTTTCTGTTTTTATTTTTTGCTGTTTGTTTGTTTTCTGTTTTTCTAGGCCATGAAATTATCTGCTTGATGTAAATCTTTTCCTTTGTTTTTAATGAAATTTCTGAAGTGTTTTCTGTTCTATGGCATACTCATCATTCCTAACTTAACCATTTTCATTTTTGAAGTTTGGACTAGTTAGCTTAATTATATCAAGGTGTTATGATCTCCAGAGACCTTTTGCTTGAGCATTTCTTCTAGCCTGGTCATCGCTGCGGCAAGAAGATTCTGAGGTAGTATTGACTTATTTGATCCACCTTAAGCTTAATCTTAGTCCCGCGCTTAGTTTAAAATTCAGATAGAAAAGAATTAAGTTTTGGGGTATAATTATCATGTTAATAATTCATTGGGGACAATGAATAATTTAAGTTTGGGGGACTTTTAGATACTCCGCTTGTTTTGCTCAAGCATTCCTCTCCTTCATAATAATTTTTCTTGGTTGTTGAGTAACCAGGGACATTTGTGACACCCACAGTTTGTCTTTGCGTCAAAAGATGGCCTATGAAATATTGAAAAAAAAAAGATAAGAAGAAAAAAAATTATTTGCGGAAAAGAAAATTGTGGAAAATTTTGCTGAGAAAATTCATAGAGCAAAAGTTTTGAAGAATGAATGATAATCTAGCAGTTTTCTATCTCCCAGGGCTTAGGTGAGCTTCATCATAAAATGTCGCCATTCTGAGAAGCAAGGGATAGAATAACTAAGGATTTTTTTGAGCTAACAATGAGTATTTACCCTAATTGGTGATAAGTTTGAGGCAAGGGTATACTGCACCATAAAGTGGGTCATCTCATGCTTAAGAGCTTATGACTGTAAGGCTGTTTTAAGTCTGAAGAATAGAAAAAAATAAAACCCCTTAAAAAGTGTGTTTTAATATGTCTGATAATAGAGTTGGGTTGTGGTAAGTTCTTAGGATTGAGTTAAAGGTGGTGAATATTTGTTCAATGCTGAAAGAATTATTTTGCTGCAGCAGTGCTTGGTTTTGCAGAATGCTCAGGTAAAGGTTGAAGGTAGTGTTGGATTATCTGTTTTGATTAAGTGGTGCTATGACTAATGTTTTGAATTCTTAAAAGAAGGTTAGTTAGTATTGCTCGGGACGCACAATAGTTCAAGTTTGGGGGTATGATAACTCTCCAAAAGGGAGTTATTTCGGCCTTACTTCTATAGTGATTTGTGTGTCATTTGTGCCTAATAGGGTTGCTTTTAGATGAATATTATGTGTTTTAACATATTTAGAAGAATGGATGCTTTGGAAGTTATTCTGTGCAGAAAATAATACTGAGCGACTTGAGGGAGCAAAATCCATGATCCAGCAACGCAAGGAGCAAAACTGCCACGTGAGCCGCACGTGATTCATTAAATGAAGTGGCGTTAGCTGAATTGATCTCGGATTTAGGGAGCTTGGAGAGCCCTCCACGTGTAAAATTTGACCTAATTAGGGTTGACTCCACTCTATAAAAGGAAGTAGCCGTCTCAAGTCCAAAACAATTCCAAATTCGAGAAAGGAAAGTCTTATTCCATTCGTGGAGGTTTACTTTCCATCTTTGGAAGCCGAATAAGGGAGGAACGATTGGAGACTTCCAGACGACCATCAACTACGAATTTCTTCAAGGGAATTAATCTTTTCTTGTAAATTTCTTGTAGTTATGGATGCACATACTCAGATTGTAGCGTGTGTTATTTTGTACTCCATGAACTAAATTTACTTAAGTGTTGGTTAGGATCTATGTAATTTACATACTTCATTCTCTATGCAATTTATGTTGATTTGAGCATCTTGATTATTTGTTGTGCATATTCCTATTTTGTGCCCGCTTGGCCAACCGATATGAATATCACCTCTTAGTTTTAGGGATGATTTGAGAGGTGTGTGGCATTTAATCACACTAGATCATTATGTGTTGGTGGACGCCAGTAACCGACTTAGGGATAACGAGTCACCTAGTGCTTGATCGGTAGTATGTCATTGGAGTTGAAACCCATTCAAAAAAATCCAGAGTTCTGGGAGGATCCTACTGATAAGACTGCAAGAGAATTGCCTAATCAATATTATTGCTAGAGCATCTTTTAAAACAATTACAGAAATCTTAACCAACGCCTGTTTCCAATCTGTCTGCTTTATCCGTTTACTTTCTGCTCTGTTATTTCTTTTGCTTCAGCATTTTATCAAAATCAATCATTTTAACAACCTTGAAACCATTAAAGAGTTACATAAAATAGGTAGAGTGGAAGTTATTCAAAACCTCGTGGATATGATAAATTACTTATCACTTGTTGCAGACTATGTGCACTTGCATAGTATTCTAGAGAGCATTTTTATCATATTTTTACCCCACTCTAGAAAGCAACAAGTTTTTGGCGCCGTTGTCGGGGACTTGAATAAGTTTTTATCTGATCTGTTTTGTGTATGTGTTTTAGTGGTTTGGTGCTAAAACTTTTTTATTGTTTCCTTTGTTTTTGCAGGTGTGAGATTGGTGCATGAGCGATCCACTTGGGGTGAGATTCGAGCTTGATCCAGAAATTGAAAGGACATTCAGAAGAAGAAGGAGAGAGCAGCGAAGAAATCAAAATCCAATGGATAACGTGTCGCGTCTCCCAGAAATTCCAGAAGATCAAGTTGATCCCCAGCAGAATCGTGTGTTGTAG

mRNA sequence

ATGCGCGACAGGGGCGATAGCGTCGCGACGCTATTGGCAGATTTCCTATTTAATCTCGCGGCAGTAGGCTTCGTCGACAGCGTTCGCAAGATTTTTGGTGGTGATAGTAGGAAGCTTTCAGGCGCGGTAAGCAATGGGGTTCTCGTTCCGACGATTCCTCAACCCAATGTCTCCTCCTTGGTAGTCAAGCACCAGAACCAGTCGTTGCAGCCCCTCTCAAATGCGACAACATCGTCTTCTTTGCGTTTTTCAGAGATCCAGCGCGTGAGGGCCTTCCCAGTTTTTCCCGATGACTTGTTTAATCCTTGGATCCCTCCACCACCAGTTGAAAGAGAGGAAGAAGAGGAGGATGATTCGGCAGTGCTTGGTTTTGCAGAATGCTCAGATTGGTGCATGAGCGATCCACTTGGGGTGAGATTCGAGCTTGATCCAGAAATTGAAAGGACATTCAGAAGAAGAAGGAGAGAGCAGCGAAGAAATCAAAATCCAATGGATAACGTGTCGCGTCTCCCAGAAATTCCAGAAGATCAAGTTGATCCCCAGCAGAATCGTGTGTTGTAG

Coding sequence (CDS)

ATGCGCGACAGGGGCGATAGCGTCGCGACGCTATTGGCAGATTTCCTATTTAATCTCGCGGCAGTAGGCTTCGTCGACAGCGTTCGCAAGATTTTTGGTGGTGATAGTAGGAAGCTTTCAGGCGCGGTAAGCAATGGGGTTCTCGTTCCGACGATTCCTCAACCCAATGTCTCCTCCTTGGTAGTCAAGCACCAGAACCAGTCGTTGCAGCCCCTCTCAAATGCGACAACATCGTCTTCTTTGCGTTTTTCAGAGATCCAGCGCGTGAGGGCCTTCCCAGTTTTTCCCGATGACTTGTTTAATCCTTGGATCCCTCCACCACCAGTTGAAAGAGAGGAAGAAGAGGAGGATGATTCGGCAGTGCTTGGTTTTGCAGAATGCTCAGATTGGTGCATGAGCGATCCACTTGGGGTGAGATTCGAGCTTGATCCAGAAATTGAAAGGACATTCAGAAGAAGAAGGAGAGAGCAGCGAAGAAATCAAAATCCAATGGATAACGTGTCGCGTCTCCCAGAAATTCCAGAAGATCAAGTTGATCCCCAGCAGAATCGTGTGTTGTAG

Protein sequence

MRDRGDSVATLLADFLFNLAAVGFVDSVRKIFGGDSRKLSGAVSNGVLVPTIPQPNVSSLVVKHQNQSLQPLSNATTSSSLRFSEIQRVRAFPVFPDDLFNPWIPPPPVEREEEEEDDSAVLGFAECSDWCMSDPLGVRFELDPEIERTFRRRRREQRRNQNPMDNVSRLPEIPEDQVDPQQNRVL

Homology

The following BLAST results are available for this feature:

BLAST of Spg031012.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg031012.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg031012.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg031012.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..186

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg031012	Spg031012	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg031012.1-cds	Spg031012.1-cds-scaffold10:23119171..23119346	CDS
Spg031012.1-cds	Spg031012.1-cds-scaffold10:23120820..23120846	CDS
Spg031012.1-cds	Spg031012.1-cds-scaffold10:23121950..23122037	CDS
Spg031012.1-cds	Spg031012.1-cds-scaffold10:23122648..23122863	CDS
Spg031012.1-cds	Spg031012.1-cds-scaffold10:23123940..23123993	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg031012.1	Spg031012.1-protein	polypeptide