Spg030164.1 (mRNA) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAGAAATTTGAAAATAGAAGATTCAGCTTGGATCTCCATTGCGTGGCTAAGTTTTGATTGCGTGCGAATTTGCATTTCGCGATTGCAAAAAGAAAATATCCACCCTTTGCAAAAACAAATCACTCTCTCGCTTTCGTTATTTCTTCCATTTTTTCATCTGTCTTGTCTGGTGGGCAATAGAAAGCTTTGAACCAGAAAACCCATGCTCAACCCCTAAGCTTTCTGGGCATCGGAGTACTGTCTCGATTAACTCTGCACTTAATTCCGGAGTTATGAGTCTCCTTATGAGCCATTCTGGTGGTTTCGGCATCAATTCCATCAGAATTCCCACCTCTAAACGTTTTCAGAGCAAGACGCGAGGTAATACCCTTTAATTTGCTTGTCTTTCTCTGTATCATTGCTTGAAATAATTTACTTTGTTTGTCTGTATAACTATGGGAGTGGCGAATTTTTACAATTTGAAACAACTCCAAGTGACTGAAAGTCTGAACCCGTAGTTTCTAGAATTGGAAGCACAAAAACAAACACGCACCCAATTTTCATCTTACTGAAAATGACATAGAAAGTACCACTTGATGATGTTGAGAAATTTTCGATTGAATCCGACATCATATTGAAGCATTGAGTATTGTATGGTTTATCCAAGGAGAAATTTAGGGAACATATTGTCAGATGGGGGTTGTTTTGATCACCATGTATTCAACTGTCTGATAGAGGGTCACTGGTTTTTTTAGGTAAATATGTCGTGCCTATGAAATTGGTAGGGAGACTATTCGCAGCTGAGGATCAAAGTAAAGATATTGAGTCAGTGGAGAGTAAAAACAGCAGCAATCATTTTCAAGCCGTGGCTTTTGTAAATGCCATTTCTGGTAATGCTTCTGCTCTCTGCCTGAGGTGAAAGGTTGTTCTTTTTCCTTCTTAATAGTTGATATCTCTTCCTACAATTGTTAGTAAACTTTCTTGTTCTGCATCAATGAACCAACTATTTTTTTATCTGACCTCGTGTTGAAATGAGTGAGAACTTACTTGAGATTTCTTTGTAACTTCGTTTTGGAATTTCTCGAAGTTGTTTGAATTTCTATCTGAAATTTTGAGAAATGGCTTGTTTTTACTTCAGAATTTGCATGGAAGCAACTAGCAGAAATTCATCACTGCTTGAGTTTATGAAACAATTATGAGTACATAATTTATCTATGTCCTGTGACGATGTGGGTTATTCTGTTTCAATTGATAGTTTGTCCATTAGATAACCATAATCGGTAATTTCATAAGTAACTGAATTGATAATTCATAAGCAATCAATTTTGTGATATCATAGGCAACTCTTATTTTCCTCTCATCCTGTTTTTCATTCCTGTTAAATAGGCTGTACTTTATCTATTAGGAATTAAATACATCTGGGGCCACAGCCCTGCAGTGGTTTACTGTGCATATTCTTAATTCTTTTTCATTCTCAATATTTCCAGCGACAAGTTTCCTTGCAGTAGACGCAGCAAAGGCTGGAGCTTTAAAGGATATGTGGGTAAGAGTTTGCAGTCTTCACGTATTCTGTTTTCTAAAGCCACCTGATCTCAAGTCTTTATTCTTTTGAGATTTTAATTCCCTAAAATCCATTTATTTAATTCCTTTTATTGATTTTGAAAACCATTTTTCACCAATTCCTTAAGATTCTTGATAAAATCAACGTGTATTTCTCTTGGACATAGAGTCATTAGATGTTTCTTTATTTGTAAGTGAGTTCCAATTGTTTATACTTTGACAATGACAAAGATTTTGATTATTTGTTCATTTTACTATTTTTTGGGGGTGGGGGTTGTGTGCCAGATAAGAATGGTTAATTCATTATGACTTCAAAAGAACAGAAGCTTGGTAAGAGGGCTGCTCTTTAGCATTGCTCGCCATCTTATTTTGCTTGCTTAAGATGCTGGTCTTGGCTACCATGGTAACTAAATTAGTTTGCATACATATTATGCTTGGTGTATAACTGTATATTATATCAGGAACTAGAATTATTTTCCTTCAAGTCAGGAAGGAGCTGCTTCTGTTTATACTGTGGCTGATGGTGGCATTGGAGATTGGTTTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAATTATCTGCTCTCAGTTTTACTAGGTTTAGTCTTGTGCTTTTTCTCCCCTTTACTTTTCATGTCTTTTAATGATTTGAGTTTGATAGTAAACAGTTCTTTTCTATTTCTCTGCTCTTGGCCACTTATTCCTTTATATAGTTTGGCAGTAATTTTTGGGGCAGGGTTCGTAACCAGCCTTTCCCCTTGCACATTGAGTGTTTTGCCTTTGACCCTTGGTTACATAGGTAAGCCTTTCATACACACTTTTTTGCAACCTCGGGATATTATTTCCTGTCTTATGTTAATGCCGTGATTCAATGGAACTTTGTAGGAGCTTTTGGATCAGGGAAGAGCAGAACAGAGGTAAATTACTTTCTAAACGAGTTCCAACTCTGTGTTATCTTAGTATCAAATTGTAGAAATCTTTGAATCAGTTGAGCTCCACATATTTGGAGATACATCCAAGGTCCTAGGCTCAACCTTGTAGGCTGAAAACTTTGTAATCTAAAACCTTTGTTGTCTCTCTAAGTTGGGCTTGGGGTAGGTAAATCCTTCTCCGGATTGATGGGGTAGACCATAAGCATAATATAAGGAGTGGGGCTTTCATCACCCCAGTTATAGAAAAATAATAATAATAAACCAGGACTAGAAATTATTCAACGGTTCTATTATGCCAGAGTCTTCATAATTTTTACTCTCTCCAGATTTATCATCAATTTTAGGGTGTGTTTGGTTTAACTTTTCAAGTGTTTAATTTTGAAAAGAAAAAATCATTTTGAAAAAAATTCTAGTGTTTGGCAACTACTAAAAATGACTTATTGAGAGAAACACTTGAAGGCAAATTTTTTAAAAAGAGATTTTAAGTATATAATAACTTGTGTATAAAAACACTTATGAGGAAACATATGAGTGTTTAAATTCTAAACAATTTTTATACAAAATGTTTAAAAAGAAATACATTCTTGAAAAACACTTAAACAAAAAGGTATTCCAAACGGACCCTTACTATAGCTTCTAGTTACATTGAACTTGAGAGCATTTCTATTGAAATATATGAATCCTTCTGCTCTGATGATCGGGATGAGTACACATGTTTATGTGGGATTGTTTCAGTAGAAATCGTTAAAGTCTGTGCTGATGGTCCTGCATTGAGAAAAGGCAATTAATTGGAATTTGGTCACTTCGTATTTTCAGGTTGTTGGAAACTCTGTTGCTTTCTCTTTAGGACTTGCTACGACCCTAGCACTGTTAGGCATAGCTGCTTCTTTTGCTGGAAAGGCATATGGACAGATTGGCCAAGGATTACCTTTGGCTGCTTCAGGCTTAGCTGTTATTATGGGCCTAAACTTATTGGAGGTACTCATCAAGCTTGATTATTTGTATCAACGATGAAGTTGATATGCCGATTTTGAGTGAACAGTTGACTACTGCCCAAAGTTTTTATCTTTTTTACTGAATTGTTGCGTAATGTTCCTGAAATGTAATTCACAACCTCATAAGGACATCAATTCATGATATGGAACTCTGTCCTGGAGTTAATTTTTATTATTATTTTCATTTTGATGATTAACAACAACAGGCATAAAGCACAAAGATAGAGTACTTTGGTATTGTTAAATGCTATTCACAATCATCTTTTTCTGTGGAAAAGTTCATTAAATTTGTCTCATTGTAAATAGATATCAATTTCAATTATTTGTAAGTATCAGTGGATTGCAGAACCTGATAACTAAGTACTTAAGACTGTTTTTTTCCAATTTCTTTTTGGTCGTGTCTGTTGATGGATTGATTCTATAATTGGTCATGAATTGCAGATAATTGAGTTGCAACTACCCTCATTCTTTGACAATTTTGATCCCCGTTCTGCCGCTGCCAACTTTCCATCAAGTAATTGGCCCCTCCATTTCTTGCTGACCTTGGTTACTCATTTAAATGCTCTAACAAGCTTCTAAATCTGATATATTAGGTGTGCAAGCATATCTAGCTGGGCTTACATTTGCTTTGGCTGCATCTCCTTGCAGTACTCCTGTGTTGGCTACGTTGCTTGGATATGTAGCTACATCCAAGGTGCCTTAAATCATTTCTTATGCCGATACAACCTTGATCTTAGTTTCATTTCTTATACACAGGAGTGAGTAAGGAGGAATTTTTTTTAAAAAATATATTCAACAAATGCGTAAGCGTCTCTCTCTCTCTCACCCATTTGTCCTATGAAATGAATGGAAAATAGATCATCAGTATACCCTTGTGGGTAGTATAGTGTTAGGCTACTTTTCTAAGGACTTGGGATGGTTAGTTTAGAGATACCCTCTCAAGTCTTAAGTATAAGATCCCAAGTTGAATTGAAATTTTGATAACTGAAAAGTCCTCTTTCAAGAATCGATAAGGTGGATCATGAACATAATGCAAGGAGTTTGCCACTAATTTTCAGAAATGGACATCGTAATTCTTTCCTCGGTGTTCCTGTTAATGACTACTATCGTTTATAACAGGATCCGTTAGTCGGGGGCAGCCTCCTTTTGACATACACAACTGGCTACGTCGTGCCGCTACTTCTTGCAGCTTCATTTGCTGGAGCATTACAGGTAATATATGGTTATAGTAGGACGGAGAATTTACCTGCATATATCTCAATATATGCAGACTAGCTGAATGAAGTATAAGTGTCTTGAAAATGTTGGCCCCCTTTGTTATTTTTGATAATCTAATTCATTGTGGGATTTAGTTTTGTGATGGAGTGTGTGTTAACATGCGTGCAGAGCCTTCTGTCATTCCGCAAGTTCTCATCATGGATTAATCCTATAAGGTAAGTCATTTAAGCTAGTTTTAGAGGTGCCAATTGTGAAACGACAGATATGAATGGGTTTGTTTTGTTGTTGATGAATGCAGTGGTGCTCTCCTGTTGGGTGGAGGTGTTTATACTTTCTTGGACAGAATGTTTCCAGTCACAATGTCAATGTAAGTGTAGAAATGTTATATAAATACAAACTCCTCACATAAATGATAAGCTTATTTATTATGTTGCTCCTCTCATTCAAACGTCATTCATATCCATATTTTTCTGTGTTTTCTTTTGGCCTCACTCTCTTAAATTTGTTGTGGGTAAAGCTCCACCGCTTCTTGCCATTTTCTTTTTTTTTTTTTTTTTTTTGGATTCTTATGTTTCCCTTTTGAAATGGTTATTAGAGTGATTTTAGATTTGTGGATTGGTGTTTTTTTCTTCTTTCGAAAAAAGTAAAATAAAAGAAAAAAATAGAAAAAGGAGGAAAAAAAAAAAAAAGGTAGGATTCTTTTCCTCTGCTTTTTATTATTTTAAAAGTGGGTTTGTTTTTCTTTGATTTGTTTGATTGCAACCTTTCTTAACAATTTTTACTTTTTGTAATTTCACATTTTGAATGGTTTGCTTCTAACTTCTGATTATTGAATATT ATGAGTCTCCTTATGAGCCATTCTGGTGGTTTCGGCATCAATTCCATCAGAATTCCCACCTCTAAACGTTTTCAGAGCAAGACGCGAGGTAAATATGTCGTGCCTATGAAATTGGTAGGGAGACTATTCGCAGCTGAGGATCAAAGTAAAGATATTGAGTCAGTGGAGAGTAAAAACAGCAGCAATCATTTTCAAGCCGTGGCTTTTGTAAATGCCATTTCTGCGACAAGTTTCCTTGCAGTAGACGCAGCAAAGGCTGGAGCTTTAAAGGATATGTGGGAAGGAGCTGCTTCTGTTTATACTGTGGCTGATGGTGGCATTGGAGATTGGTTTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAATTATCTGCTCTCAGTTTTACTAGTTTGGCAGTAATTTTTGGGGCAGGGTTCGTAACCAGCCTTTCCCCTTGCACATTGAGTGTTTTGCCTTTGACCCTTGGTTACATAGGAGCTTTTGGATCAGGGAAGAGCAGAACAGAGGTTGTTGGAAACTCTGTTGCTTTCTCTTTAGGACTTGCTACGACCCTAGCACTGTTAGGCATAGCTGCTTCTTTTGCTGGAAAGGCATATGGACAGATTGGCCAAGGATTACCTTTGGCTGCTTCAGGCTTAGCTGTTATTATGGGCCTAAACTTATTGGAGATAATTGAGTTGCAACTACCCTCATTCTTTGACAATTTTGATCCCCGTTCTGCCGCTGCCAACTTTCCATCAAGTGTGCAAGCATATCTAGCTGGGCTTACATTTGCTTTGGCTGCATCTCCTTGCAGTACTCCTGTGTTGGCTACGTTGCTTGGATATGTAGCTACATCCAAGGATCCGTTAGTCGGGGGCAGCCTCCTTTTGACATACACAACTGGCTACGTCGTGCCGCTACTTCTTGCAGCTTCATTTGCTGGAGCATTACAGAGCCTTCTGTCATTCCGCAAGTTCTCATCATGGATTAATCCTATAAGTGGTGCTCTCCTGTTGGGTGGAGGTGTTTATACTTTCTTGGACAGAATGTTTCCAGTCACAATGTCAATGTAA ATGAGTCTCCTTATGAGCCATTCTGGTGGTTTCGGCATCAATTCCATCAGAATTCCCACCTCTAAACGTTTTCAGAGCAAGACGCGAGGTAAATATGTCGTGCCTATGAAATTGGTAGGGAGACTATTCGCAGCTGAGGATCAAAGTAAAGATATTGAGTCAGTGGAGAGTAAAAACAGCAGCAATCATTTTCAAGCCGTGGCTTTTGTAAATGCCATTTCTGCGACAAGTTTCCTTGCAGTAGACGCAGCAAAGGCTGGAGCTTTAAAGGATATGTGGGAAGGAGCTGCTTCTGTTTATACTGTGGCTGATGGTGGCATTGGAGATTGGTTTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAATTATCTGCTCTCAGTTTTACTAGTTTGGCAGTAATTTTTGGGGCAGGGTTCGTAACCAGCCTTTCCCCTTGCACATTGAGTGTTTTGCCTTTGACCCTTGGTTACATAGGAGCTTTTGGATCAGGGAAGAGCAGAACAGAGGTTGTTGGAAACTCTGTTGCTTTCTCTTTAGGACTTGCTACGACCCTAGCACTGTTAGGCATAGCTGCTTCTTTTGCTGGAAAGGCATATGGACAGATTGGCCAAGGATTACCTTTGGCTGCTTCAGGCTTAGCTGTTATTATGGGCCTAAACTTATTGGAGATAATTGAGTTGCAACTACCCTCATTCTTTGACAATTTTGATCCCCGTTCTGCCGCTGCCAACTTTCCATCAAGTGTGCAAGCATATCTAGCTGGGCTTACATTTGCTTTGGCTGCATCTCCTTGCAGTACTCCTGTGTTGGCTACGTTGCTTGGATATGTAGCTACATCCAAGGATCCGTTAGTCGGGGGCAGCCTCCTTTTGACATACACAACTGGCTACGTCGTGCCGCTACTTCTTGCAGCTTCATTTGCTGGAGCATTACAGAGCCTTCTGTCATTCCGCAAGTTCTCATCATGGATTAATCCTATAAGTGGTGCTCTCCTGTTGGGTGGAGGTGTTTATACTTTCTTGGACAGAATGTTTCCAGTCACAATGTCAATGTAA MSLLMSHSGGFGINSIRIPTSKRFQSKTRGKYVVPMKLVGRLFAAEDQSKDIESVESKNSSNHFQAVAFVNAISATSFLAVDAAKAGALKDMWEGAASVYTVADGGIGDWFGGFLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRTEVVGNSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYTFLDRMFPVTMSM Homology
BLAST of Spg030164.1 vs. NCBI nr
Match: XP_038903027.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X2 [Benincasa hispida]) HSP 1 Score: 611.7 bits (1576), Expect = 4.1e-171 Identity = 327/359 (91.09%), Postives = 344/359 (95.82%), Query Frame = 0
BLAST of Spg030164.1 vs. NCBI nr
Match: XP_022142907.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 [Momordica charantia]) HSP 1 Score: 609.8 bits (1571), Expect = 1.6e-170 Identity = 324/358 (90.50%), Postives = 342/358 (95.53%), Query Frame = 0
BLAST of Spg030164.1 vs. NCBI nr
Match: XP_038903026.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 [Benincasa hispida]) HSP 1 Score: 604.7 bits (1558), Expect = 5.0e-169 Identity = 327/366 (89.34%), Postives = 344/366 (93.99%), Query Frame = 0
BLAST of Spg030164.1 vs. NCBI nr
Match: XP_022985240.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita maxima]) HSP 1 Score: 598.6 bits (1542), Expect = 3.6e-167 Identity = 322/359 (89.69%), Postives = 337/359 (93.87%), Query Frame = 0
BLAST of Spg030164.1 vs. NCBI nr
Match: XP_023553444.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein [Cucurbita pepo subsp. pepo]) HSP 1 Score: 597.0 bits (1538), Expect = 1.0e-166 Identity = 320/359 (89.14%), Postives = 337/359 (93.87%), Query Frame = 0
BLAST of Spg030164.1 vs. ExPASy Swiss-Prot
Match: Q2QY07 (Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CCDA2 PE=3 SV=1) HSP 1 Score: 433.7 bits (1114), Expect = 2.0e-120 Identity = 231/283 (81.63%), Postives = 255/283 (90.11%), Query Frame = 0
BLAST of Spg030164.1 vs. ExPASy Swiss-Prot
Match: Q2RAR6 (Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CCDA1 PE=2 SV=1) HSP 1 Score: 433.3 bits (1113), Expect = 2.6e-120 Identity = 230/283 (81.27%), Postives = 255/283 (90.11%), Query Frame = 0
BLAST of Spg030164.1 vs. ExPASy Swiss-Prot
Match: Q9M5P3 (Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thaliana OX=3702 GN=CCDA PE=1 SV=1) HSP 1 Score: 427.6 bits (1098), Expect = 1.4e-118 Identity = 244/355 (68.73%), Postives = 286/355 (80.56%), Query Frame = 0
BLAST of Spg030164.1 vs. ExPASy Swiss-Prot
Match: P51364 (Putative cytochrome c-type biogenesis protein DbsD-like OS=Porphyra purpurea OX=2787 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 1.0e-23 Identity = 69/232 (29.74%), Postives = 124/232 (53.45%), Query Frame = 0
BLAST of Spg030164.1 vs. ExPASy Swiss-Prot
Match: Q1XDC3 (Putative cytochrome c-type biogenesis protein DbsD-like OS=Pyropia yezoensis OX=2788 PE=3 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 3.1e-20 Identity = 65/208 (31.25%), Postives = 107/208 (51.44%), Query Frame = 0
BLAST of Spg030164.1 vs. ExPASy TrEMBL
Match: A0A6J1CP79 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012907 PE=3 SV=1) HSP 1 Score: 609.8 bits (1571), Expect = 7.5e-171 Identity = 324/358 (90.50%), Postives = 342/358 (95.53%), Query Frame = 0
BLAST of Spg030164.1 vs. ExPASy TrEMBL
Match: A0A6J1JAT1 (cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Cucurbita maxima OX=3661 GN=LOC111483292 PE=3 SV=1) HSP 1 Score: 598.6 bits (1542), Expect = 1.7e-167 Identity = 322/359 (89.69%), Postives = 337/359 (93.87%), Query Frame = 0
BLAST of Spg030164.1 vs. ExPASy TrEMBL
Match: A0A6J1ENE1 (cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Cucurbita moschata OX=3662 GN=LOC111436074 PE=3 SV=1) HSP 1 Score: 595.1 bits (1533), Expect = 1.9e-166 Identity = 320/359 (89.14%), Postives = 336/359 (93.59%), Query Frame = 0
BLAST of Spg030164.1 vs. ExPASy TrEMBL
Match: A0A5D3BU70 (Cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00980 PE=3 SV=1) HSP 1 Score: 593.6 bits (1529), Expect = 5.6e-166 Identity = 319/359 (88.86%), Postives = 338/359 (94.15%), Query Frame = 0
BLAST of Spg030164.1 vs. ExPASy TrEMBL
Match: A0A1S3BSW3 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493358 PE=3 SV=1) HSP 1 Score: 592.0 bits (1525), Expect = 1.6e-165 Identity = 318/359 (88.58%), Postives = 338/359 (94.15%), Query Frame = 0
BLAST of Spg030164.1 vs. TAIR 10
Match: AT5G54290.1 (cytochrome c biogenesis protein family ) HSP 1 Score: 427.6 bits (1098), Expect = 1.0e-119 Identity = 244/355 (68.73%), Postives = 286/355 (80.56%), Query Frame = 0
BLAST of Spg030164.1 vs. TAIR 10
Match: AT5G54290.2 (cytochrome c biogenesis protein family ) HSP 1 Score: 426.4 bits (1095), Expect = 2.3e-119 Identity = 233/309 (75.40%), Postives = 267/309 (86.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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