Spg028561.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg028561.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease H
Location	scaffold7: 14467011 .. 14470052 (-)
Sequence length	1311
RNA-Seq Expression	Spg028561.1
Synteny	Spg028561.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCATAATTTTTCCAGGATACTTCGTATCTTGGATAAACCTGGTCCTAGCACTAAAACCCATGATGAGAGGTTGATTAGGGATCCGAGGAAGGGGAAAGAGCCCATGGAGCATAGTGTAGAATCAGGGACGAGATCGAAGGGAAAGAAAACTGACAGCATGACCAGCAAGGTCAGGGGGCTCAGACCTACAGATCGTACAATTCTGAGGAGCCCAGAACCAAGCACACTAAAGGGACGTGACCACACAGTTTCAACACCAAACTACAGTCATACCAAGACAGACCTGAGGAATCTGATCGAGGATAAGCGCAGAAGTGCCAAAATTTCCGAGGTCGAGGCCAGAGCTGCTGAAGCTGGCCAGGGCTGCTGAGGCCAAGAAGAACAATCAGGGAGACCTGCAGAAGCTAAAGGACTCGGGAGAGCAAGACCTGGAAGAACTAATCGACCAGGTCGACCCGCCCTTCACGAAAGAAGTCATGAAAGCTGAGGTACCCCAGAAGTTCAAGGTACCTGCATTCAAACCATATGATGGCAATAAAGACCCCGTGCAGCATCTAAATGCCTACAAAAGCTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGTCGCGCATTCTTTTTCACTCTAACAGGATCAGTCAAGCATTGGTTTGAAAGGTTGAAAAGGATCCATCAACTCTTTCAAGGAATTAGCCCGAGCATTCCTTGCACAGCTCATGGGAGCCAGAGACAGCGCAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCAGGTGAGAGCTTGTGTGATTATATAACGCGTTTTAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTAGTAGCCATCACAGCCGGACTAAAAGATGAGAGACTTCTTAATTCGATGGGTTTTTTAGAAAACTAAAGAAAAAATTGAAAAAAATTAGAAAAAAAAGGTTATTTTGAAACTAATTAGATATATGGGGTGTCGCATCTCTTTGAGATACGCGACACCCCTCCAGGTATGCTTTTTTTTTACTTTTTTTATTTTTTTAATAGATTAATAAATTAATAAATTAATGTATTATTATTATTATTATATTAAATTAATTTGGTTTAATAATTATGTTTTTTTTTTTTATAAATATTAGTTTTCATTTTTTTTTTTTGGAATCCGATGATTAAGTTTCTAAATGATTTTTTTTTTTAATTTAAAGTTTGCATTTTTTAATATATATCTACATGTTTTGAAGTTTGCATTTTCTTTTTGGTGTCTATATCATTTTTTTAATACAAAACATTACATATTAAATAGAATAGATTTTTCGAAAATTGTACATTAGTTTTACGAATTTTTCGAAAATTGTATATTAGTTTCATGAATTTTTTGATAAAACTTTATATAGTTAAAACATAATTAAATTGCATAAATAGAAAACACAATTACATTTTAAAAACTAACCATCCTTAAACAACTCCAATTCAATTTCAAGTACAGTTAATTTTAAAATCGATAATCAATTCACGAATGAGTTGTCACAAGTATTTTAACAATATCTTTCTCAAGTGAAACATATTTATATTTAAAAAAAAATGATTACAAAGCAAATTGAGAGCTTTTATTTCAAATCTATTATTGTTAGAAACAACTATTAACATATTTTAAAACATTTTAACTTCATCTCAATAATTAGATTAGACAAATTCTACAACGACAACTTTCTTTTTTCTTTCTGTTAAGAATAATGACTAGCAATTTTAGTAAACTATATAATTAATTTAGATTAGCGATTCATTGCATTATATTATAAATTCATATATATTTATTTTAAATGCAAGTAAAAATAAGTATTATCTTAAATGGACTAATACAAGTAAAAATCCATATACTTATTTTTAAATTAATTGTACTTGAAATTGAATTGAAGTTGTTTAAGGATGATTAGTTTTAAAAACGTAATTGTGTTTTCTATCTATACATAAATTTAATTATGGTTTAACTATATACAATTTTATCGAAAAATTCGTGAAACTAATATACAATTTTCGAAAAATTCGTGAAACTAATGTACAATTTTTGAAAAATCTATTTGTAACATCAGTTGAATTAAAGATGTGATATTTTGTATTAAATGATATAGACAACAAAAAGAAAATGCAAACTTTAAAACATGTAAATTACGGATATATATTAAAAAAATGCAAACTTTAAAATAAATAAAAAATCATTAAGAAATATAATCATCGGGTTCATCATACTAATATTTATTAAAAAAAACATAATTATTAAACAAAATTAATTTAATTTAATAATAATAATAATAATAAATTAATTTATTAATTTAATAATGTATTAAAAAAAAAGAAAAAAAAAGCAAACCTGGTGAGAGAAAAGGGGTGTCGCGTCTCTCAAAGAGACGCAACACCCCATATATCTAATTAGTTTCAAAAAAACCTTTTTTTTCTAATTTTTTTCAATTTTTTCTTTAGTTTTCTAAAAAACCCTAATTCGATAGGTAAGAGCCAACCTCAAACCTATGCAGAGTTTGTTTCCCGAACACAGAAATACATGAGCGCAGAGGAATTGCTCAAGTCAAAGAAGTTAGAACGAGAACACAAGAGGTCTCTTCATCTGACCACGACAATAAGAAAGACAAAAAGCAGCGGACAGACGAAGGAGGCCGAGGCCGACCAGACCGAGGAGACCACTTGAAGAAGTTTGAAAAGTACACCCCTACTTCAATCCCACAGGATCTGATCTTGATGGAGATACGGAATACAAACCTGCTCAATGTGCCTAGAAAGTTGAAGTCAAATCCTGATAACAGAGACAAAAGTCAGTATTGTCTCTTCCATCGAGATCACGGACATTCAACTAGGAACTACATTCAGCAAAAGGACGAAATTGAAGCTCTGATTCGGAACGGATACCTGAAGGAGTTCACCACAAAGGTCGAGGCAGACCAGAGATGGCCGAGGCCGACCAGAGATGACCTAGGCAAAGATGATGGTGAACCTCCTCTAGTAATGCATTGA

mRNA sequence

ATGGATCATAATTTTTCCAGGATACTTCGTATCTTGGATAAACCTGGTCCTAGCACTAAAACCCATGATGAGAGGTTGATTAGGGATCCGAGGAAGGGGAAAGAGCCCATGGAGCATAGTGTAGAATCAGGGACGAGATCGAAGGGAAAGAAAACTGACAGCATGACCAGCAAGGTCAGGGGGCTCAGACCTACAGATCGTACAATTCTGAGGAGCCCAGAACCAAGCACACTAAAGGGACAAGTGCCAAAATTTCCGAGGTCGAGGCCAGAGCTGCTGAAGCTGGCCAGGGCTGCTGAGGCCAAGAAGAACAATCAGGGAGACCTGCAGAAGCTAAAGGACTCGGGAGAGCAAGACCTGGAAGAACTAATCGACCAGGTCGACCCGCCCTTCACGAAAGAAGTCATGAAAGCTGAGGTACCCCAGAAGTTCAAGGTACCTGCATTCAAACCATATGATGGCAATAAAGACCCCGTGCAGCATCTAAATGCCTACAAAAGCTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGTCGCGCATTCTTTTTCACTCTAACAGGATCAGTCAAGCATTGGTTTGAAAGGTTGAAAAGGATCCATCAACTCTTTCAAGGAATTAGCCCGAGCATTCCTTGCACAGCTCATGGGAGCCAGAGACAGCGCAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCAGGTGAGAGCTTGTGTGATTATATAACGCGTTTTAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTAGTAGCCATCACAGCCGGACTAAAAGATGAGAGACTTCTTAATTCGATGGAAATACATGAGCGCAGAGGAATTGCTCAAGTCAAAGAAGTTAGAACGAGAACACAAGAGGTCTCTTCATCTGACCACGACAATAAGAAAGACAAAAAGCAGCGGACAGACGAAGGAGGCCGAGGCCGACCAGACCGAGGAGACCACTTGAAGAAGTTTGAAAAGTACACCCCTACTTCAATCCCACAGGATCTGATCTTGATGGAGATACGGAATACAAACCTGCTCAATGTGCCTAGAAAGTTGAAGTCAAATCCTGATAACAGAGACAAAAGTCAGTATTGTCTCTTCCATCGAGATCACGGACATTCAACTAGGAACTACATTCAGCAAAAGGACGAAATTGAAGCTCTGATTCGGAACGGATACCTGAAGGAGTTCACCACAAAGGTCGAGGCAGACCAGAGATGGCCGAGGCCGACCAGAGATGACCTAGGCAAAGATGATGGTGAACCTCCTCTAGTAATGCATTGA

Coding sequence (CDS)

ATGGATCATAATTTTTCCAGGATACTTCGTATCTTGGATAAACCTGGTCCTAGCACTAAAACCCATGATGAGAGGTTGATTAGGGATCCGAGGAAGGGGAAAGAGCCCATGGAGCATAGTGTAGAATCAGGGACGAGATCGAAGGGAAAGAAAACTGACAGCATGACCAGCAAGGTCAGGGGGCTCAGACCTACAGATCGTACAATTCTGAGGAGCCCAGAACCAAGCACACTAAAGGGACAAGTGCCAAAATTTCCGAGGTCGAGGCCAGAGCTGCTGAAGCTGGCCAGGGCTGCTGAGGCCAAGAAGAACAATCAGGGAGACCTGCAGAAGCTAAAGGACTCGGGAGAGCAAGACCTGGAAGAACTAATCGACCAGGTCGACCCGCCCTTCACGAAAGAAGTCATGAAAGCTGAGGTACCCCAGAAGTTCAAGGTACCTGCATTCAAACCATATGATGGCAATAAAGACCCCGTGCAGCATCTAAATGCCTACAAAAGCTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGTCGCGCATTCTTTTTCACTCTAACAGGATCAGTCAAGCATTGGTTTGAAAGGTTGAAAAGGATCCATCAACTCTTTCAAGGAATTAGCCCGAGCATTCCTTGCACAGCTCATGGGAGCCAGAGACAGCGCAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCAGGTGAGAGCTTGTGTGATTATATAACGCGTTTTAACGACGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGCCCTAGTAGCCATCACAGCCGGACTAAAAGATGAGAGACTTCTTAATTCGATGGAAATACATGAGCGCAGAGGAATTGCTCAAGTCAAAGAAGTTAGAACGAGAACACAAGAGGTCTCTTCATCTGACCACGACAATAAGAAAGACAAAAAGCAGCGGACAGACGAAGGAGGCCGAGGCCGACCAGACCGAGGAGACCACTTGAAGAAGTTTGAAAAGTACACCCCTACTTCAATCCCACAGGATCTGATCTTGATGGAGATACGGAATACAAACCTGCTCAATGTGCCTAGAAAGTTGAAGTCAAATCCTGATAACAGAGACAAAAGTCAGTATTGTCTCTTCCATCGAGATCACGGACATTCAACTAGGAACTACATTCAGCAAAAGGACGAAATTGAAGCTCTGATTCGGAACGGATACCTGAAGGAGTTCACCACAAAGGTCGAGGCAGACCAGAGATGGCCGAGGCCGACCAGAGATGACCTAGGCAAAGATGATGGTGAACCTCCTCTAGTAATGCATTGA

Protein sequence

MDHNFSRILRILDKPGPSTKTHDERLIRDPRKGKEPMEHSVESGTRSKGKKTDSMTSKVRGLRPTDRTILRSPEPSTLKGQVPKFPRSRPELLKLARAAEAKKNNQGDLQKLKDSGEQDLEELIDQVDPPFTKEVMKAEVPQKFKVPAFKPYDGNKDPVQHLNAYKSWMDFHGVSDAIRCRAFFFTLTGSVKHWFERLKRIHQLFQGISPSIPCTAHGSQRQRKPHINLLTVKQQPGESLCDYITRFNDEALQVEGYSEGAALVAITAGLKDERLLNSMEIHERRGIAQVKEVRTRTQEVSSSDHDNKKDKKQRTDEGGRGRPDRGDHLKKFEKYTPTSIPQDLILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQQKDEIEALIRNGYLKEFTTKVEADQRWPRPTRDDLGKDDGEPPLVMH

Homology

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BLAST of Spg028561.1 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 251.5 bits (641), Expect = 1.3e-62
Identity = 156/412 (37.86%), Postives = 228/412 (55.34%), Query Frame = 0


Query: 26  LIRDPRKGKEPMEHSVESGTRSKGKK-----TDSMTSKVRGLRPTDRTILRSPEPSTLKG 85
           L+RDP+KGK P E   E  T S G K          +++   R T +   +SP P+   G
Sbjct: 74  LVRDPKKGKGPTESDTEESTNSVGSKLRIGGNTRQRTRIFDPRKTKKQ-HKSPAPN---G 133

Query: 86  QVPKFPRSRPELLKLARAAEAKKNNQGDLQKLKDSGEQDLEELIDQVDPPFTKEVMKAEV 145
                     E + L +   A +    + +        DLEEL+DQ D PFT+E+M+ +V
Sbjct: 134 GKSDHDDRNSEPISLDKGKPADRPESSEKRHSHKEKGFDLEELLDQADSPFTEEIMREKV 193

Query: 146 PQKFKVPAFKPYDGNKDPVQHLNAYKSWMDFHGVSDAIRCRAFFFTLTGSVKHWFERLKR 205
           P KFK+P  K +D   DPV HL+AY+ WMD +GVS+A+RCR F  TL GS + WF +LKR
Sbjct: 194 PPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKR 253

Query: 206 -IHQLFQGISPSIPCTAHGSQRQRKPHINLLTVKQQPGESLCDYITRFNDEALQVEGYSE 265
                F+ ++ +      G + + +P   LLT+KQ+  ESL DY+ RFN+E LQVEG ++
Sbjct: 254 GSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTD 313

Query: 266 GAALVAITAGLKDERLLNSMEIHERRGIAQVKEVRTRTQEVSSS--------DHDNKK-- 325
             +L+A  +G++DE L  S     +R      E  +R Q   S+        + D K+  
Sbjct: 314 AVSLLAFMSGVRDEHLSFSF---GKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKRTD 373

Query: 326 -------DKKQRTDEGGRGRPDRGDHLKKFEKYTPTSIPQDLILMEIRNTNLLNVPRKLK 385
                  DK Q +    R R  + D  +KFEKYTPT++P + +LMEI++  LL  P ++K
Sbjct: 374 PKRERSGDKPQGSRWEKRDRSSQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMK 433

Query: 386 SNPDNRDKSQYCLFHRDHGHSTRNYIQQKDEIEALIRNGYLKEFTTKVEADQ 415
           ++   R K +YCLFHRDHGH+T++    K+E+E LIR GYLKE+  + +A Q
Sbjct: 434 ASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPKATQ 478

[Close]

BLAST of Spg028561.1 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 193.0 bits (489), Expect = 5.5e-45
Identity = 129/385 (33.51%), Postives = 205/385 (53.25%), Query Frame = 0


Query: 87  RSRPELLK--LARAAEAKKNNQGDLQKLKDSGEQ--DLEELIDQVDPPFTKEVMKAEVPQ 146
           RSR  + +  L +  E  +  Q  +Q+L+    +   L+++  + +PPFT ++M A+ P 
Sbjct: 129 RSRRRMTREVLNQGEEVDRGLQERMQRLEQMVREMGPLDDVTAEHEPPFTSDIMVAKYPP 188

Query: 147 KFKVPAFKPYDGNKDPVQHLNAYKSWMDFHGVSDAIRCRAFFFTLTGSVKHWFERLKRIH 206
           +F +P  +PYDG +DP +HL  Y++ M+  G S AI CRAF  TL G+ + WF RL+  H
Sbjct: 189 RFHLPQMEPYDGQRDPTEHLELYRTLMEVQGASQAILCRAFPLTLVGAARRWFRRLQP-H 248

Query: 207 QLFQGISPSIPCTAH-GSQRQR-KPHINLLTVKQQPGESLCDYITRFNDEALQVEGYSEG 266
            +      S   T+H  S RQR KP   LLTVKQQ GE+L DYI R+N+E  QV+GY +G
Sbjct: 249 SISSFGDLSREFTSHFRSARQRGKPVTYLLTVKQQEGETLRDYIRRYNNEITQVDGYDDG 308

Query: 267 AALVAITAGLKDERLLNSMEIHERRGIAQVKEVRTRTQEVSSSDH----------DNKKD 326
            AL  I  GL+  +L  S+    +R      E+  R ++ ++++           ++ K 
Sbjct: 309 IALSGIMEGLRMGKLWWSV---SKRPPTSYSEMLARAEKYANAEERFKNRNQEKGESTKG 368

Query: 327 KKQRTDEGGRG--RPD-------------------RGDHLKKFEKYTPTSIPQDLILMEI 386
           KK++ D+  R   RPD                   R     +F  +T  + P++ ILM++
Sbjct: 369 KKKKDDQRERRVVRPDQSLRRNQFRPGERSEVRDTRPRLASQFTNFTELNTPREQILMQV 428

Query: 387 RNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQQKDEIEALIRNGYLKEFT-- 431
           RN  L   P  +K+NP  R+ ++YC FH+DHGH T    + K++IE+L+R G L+E+   
Sbjct: 429 RNPTLFRTPPPMKTNPSRRNPNKYCHFHKDHGHDTSECFELKEQIESLVRQGQLQEYVRN 488

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BLAST of Spg028561.1 vs. NCBI nr
Match: XP_030959077.1 (uncharacterized protein LOC115981028 [Quercus lobata])

HSP 1 Score: 191.0 bits (484), Expect = 2.1e-44
Identity = 124/372 (33.33%), Postives = 192/372 (51.61%), Query Frame = 0


Query: 65  TDRTILRSPEPSTLKGQVPKFPRSRPELLKL------ARAAEAKKNNQGDLQKLKDSGEQ 124
           T+R    +PE S +  +  +   S P L  L      A     K+  +  +  LK     
Sbjct: 62  TERRERENPEDSNIPSRQERQNESLPSLTDLTPPPIIAEMQAMKEQMEVMMNALKGRVSS 121

Query: 125 DLEELIDQVDPPFTKEVMKAEVPQKFKVPAFKPYDGNKDPVQHLNAYKSWMDFHGVSDAI 184
           DL++L+++ D PFT  V  + +P KF++P  + YDG  DP+ HL  +K+ M   GV D I
Sbjct: 122 DLDDLVNRTDSPFTASVNSSPLPPKFRMPQIESYDGVNDPLDHLETFKTLMHLQGVPDEI 181

Query: 185 RCRAFFFTLTGSVKHWFERL-KRIHQLFQGISPSIPCTAHGSQRQRKPHINLLTVKQQPG 244
            CRAF  TL G  + WF RL       F+ +S        G    ++    L+++KQ+  
Sbjct: 182 MCRAFPTTLKGPARVWFSRLTPNSINTFKELSAQFTSHFIGGHWYKRSTACLMSIKQRED 241

Query: 245 ESLCDYITRFNDEALQVEGYSEGAALVAITAGLKDERLLNSMEIHERRGIAQVKEVRTRT 304
           E+L  YITRFN EAL ++   +   + A T+GL+  + L S+  ++ + +A V    T+ 
Sbjct: 242 ETLRAYITRFNKEALSIDEADDKILVAAFTSGLRKGKFLFSLYKNDPKTMADVLYKATKY 301

Query: 305 QEVSSS--DHDNKKDKKQRTDE--GGRGRP------DRGD-HLK----KFEKYTPTSIPQ 364
             V  +   H+ K  K++R ++    RGR        R + H +    +F  +TP + P 
Sbjct: 302 MNVEDALLAHEEKPKKRERQEDMLQDRGRKVVRTGYQRDERHFRPPTGRFTNFTPLTAPI 361

Query: 365 DLILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQQKDEIEALIRNGY 415
           D +LM+I++   L  P KLK +P+ R + +YC FHRDHGH T NY   K +IEALIR G 
Sbjct: 362 DQVLMQIKDEGALTFPGKLKGDPNKRPRDKYCRFHRDHGHDTANYYDLKQQIEALIRQGK 421

[Close]

BLAST of Spg028561.1 vs. NCBI nr
Match: MQL77781.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 185.7 bits (470), Expect = 8.8e-43
Identity = 131/412 (31.80%), Postives = 204/412 (49.51%), Query Frame = 0


Query: 36  PMEHSVESGTRSKGKKTDSMTSKVRGLRPTDRTILRSPEPSTLKGQVPKFPRSRP----- 95
           P E   +S  RS    ++    + RG  P        P  S ++G      R  P     
Sbjct: 148 PQEQQADSPRRSHRAPSEERAPERRGRSPRHSVASPRPPRSVVEGNSHASGRGGPTNSEQ 207

Query: 96  ELL-KLARAAEAKKNNQGDLQKLKDSGEQDLEELIDQVDPPFTKEVMKAEVPQKFKVPAF 155
           EL  +L R  + ++     +Q+ +  G+   E+ +D    PF++E+++A+V  K  +P  
Sbjct: 208 ELARRLRRVVDLERRMDAMVQRAE--GKTPAEDDLD-FRSPFSREILEAQVSSKLPLPTI 267

Query: 156 KPYDGNKDPVQHLNAYKSWMDFHGVSDAIRCRAFFFTLTGSVKHWFERL-----KRIHQL 215
            PYDG  DPV H++ ++S M FHG SDA +CRAF  TL  + + W E L        HQL
Sbjct: 268 APYDGTTDPVDHIHGFESHMVFHGASDAAKCRAFPATLKETARAWLETLPAGSITSFHQL 327

Query: 216 FQGISPSIPCTAHGSQRQRKPHINLLTVKQQPGESLCDYITRFNDEALQVEGYSEGAALV 275
            +    +      G + Q +   +LL V+Q+ GE+L D++ RF  EAL++       A  
Sbjct: 328 KKSFWDNF----LGGRSQPRTAASLLAVRQKKGEALWDFVKRFRTEALRISHLDVPLATS 387

Query: 276 AITAGLKDERLLNSMEIHERRGIAQVKEVRTR------TQEVSSSDHDNKKDKKQRTDEG 335
           A+  G +D  L  ++ + +   +A++  +  R      +   S+++   + DKK+ +D G
Sbjct: 388 ALIQGTRDGFLQRTLGVQQPTTLAELLSIAQRHAACEESLAASTAEQGEQSDKKRPSDNG 447

Query: 336 -------GRGRPDRGDHLKKFEKYTPTSIPQDLILMEIRNTNLLNVPRKLKSNPDNRDKS 395
                  GR   D    L+ F  YTP ++  + IL EIRN   L  P++++S+P  RD++
Sbjct: 448 SDRDRKKGRRNGDSPRRLRPFTNYTPLTVAPEQILAEIRNEAFLRWPQRMRSDPRKRDQN 507

Query: 396 QYCLFHRDHGHSTRNYIQQKDEIEALIRNGYLKEFTTKVEADQRWPRPTRDD 424
           +YC FHRDHGH T    Q KDEIE LI+ GYL  F  + E      RP R D
Sbjct: 508 KYCRFHRDHGHDTSECRQLKDEIEDLIKRGYLGRFVRRNE-----ERPRRRD 547

[Close]

BLAST of Spg028561.1 vs. NCBI nr
Match: XP_030941654.1 (uncharacterized protein LOC115966587 [Quercus lobata])

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-42
Identity = 113/341 (33.14%), Postives = 179/341 (52.49%), Query Frame = 0


Query: 109 LQKLKDSGEQDLEELIDQVDPPFTKEVMKAEVPQKFKVPAFKPYDGNKDPVQHLNAYKSW 168
           +  LK     DL++L+++ D PFT  V  + +P KF++P  + YDG KDP+ HL  +K+ 
Sbjct: 12  MNALKGRVSSDLDDLVNRTDSPFTASVNSSPLPPKFRMPQIESYDGVKDPLDHLETFKTL 71

Query: 169 MDFHGVSDAIRCRAFFFTLTGSVKHWFERL-KRIHQLFQGISPSIPCTAHGSQRQRKPHI 228
           M   GV D I CRAF  TL G  + WF RL       F+ +S        G  R ++   
Sbjct: 72  MHLQGVPDEIMCRAFPTTLKGPARVWFSRLTPNSINTFKELSAQFTSHFIGGHRYKRSTA 131

Query: 229 NLLTVKQQPGESLCDYITRFNDEALQVEGYSEGAALVAITAGLKDERLLNSMEIHERRGI 288
            L+++KQ+  E+L  YITRFN EAL ++   +   +   T+GL+  + L S+  ++ + +
Sbjct: 132 CLMSIKQREDETLRAYITRFNKEALSIDEADDKILVATFTSGLRKGKFLFSLYKNDPKTM 191

Query: 289 AQVKEVRTRTQEVSSS----DHDNKKDKKQRTDEGGRGRP-----DRGDHLK------KF 348
           A V    T+      +    +   KK ++Q      RGR      D+ D  +      +F
Sbjct: 192 ADVLYRATKYMNAEDALLAREEKPKKRERQEDMRQDRGRKVARTGDQRDERRFRPPTGRF 251

Query: 349 EKYTPTSIPQDLILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQQKD 408
             +TP + P D +LM+I++   L  P KLK +P+ R + +YC FHRDHGH T N    K 
Sbjct: 252 TNFTPLTAPIDQVLMQIKDEGALTFPGKLKGDPNKRPRDKYCRFHRDHGHDTANCYDLKQ 311

Query: 409 EIEALIRNGYLKEFTTKVEADQRWPRPTRDDLGKDDGEPPL 434
           +IEALIR G L++F ++ + D++  +  R +   +   PP+
Sbjct: 312 QIEALIRQGKLQKFVSREKTDKQEEQTPRRE--NERPRPPI 350

[Close]

BLAST of Spg028561.1 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.3e-63
Identity = 156/412 (37.86%), Postives = 228/412 (55.34%), Query Frame = 0


Query: 26  LIRDPRKGKEPMEHSVESGTRSKGKK-----TDSMTSKVRGLRPTDRTILRSPEPSTLKG 85
           L+RDP+KGK P E   E  T S G K          +++   R T +   +SP P+   G
Sbjct: 74  LVRDPKKGKGPTESDTEESTNSVGSKLRIGGNTRQRTRIFDPRKTKKQ-HKSPAPN---G 133

Query: 86  QVPKFPRSRPELLKLARAAEAKKNNQGDLQKLKDSGEQDLEELIDQVDPPFTKEVMKAEV 145
                     E + L +   A +    + +        DLEEL+DQ D PFT+E+M+ +V
Sbjct: 134 GKSDHDDRNSEPISLDKGKPADRPESSEKRHSHKEKGFDLEELLDQADSPFTEEIMREKV 193

Query: 146 PQKFKVPAFKPYDGNKDPVQHLNAYKSWMDFHGVSDAIRCRAFFFTLTGSVKHWFERLKR 205
           P KFK+P  K +D   DPV HL+AY+ WMD +GVS+A+RCR F  TL GS + WF +LKR
Sbjct: 194 PPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKR 253

Query: 206 -IHQLFQGISPSIPCTAHGSQRQRKPHINLLTVKQQPGESLCDYITRFNDEALQVEGYSE 265
                F+ ++ +      G + + +P   LLT+KQ+  ESL DY+ RFN+E LQVEG ++
Sbjct: 254 GSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTD 313

Query: 266 GAALVAITAGLKDERLLNSMEIHERRGIAQVKEVRTRTQEVSSS--------DHDNKK-- 325
             +L+A  +G++DE L  S     +R      E  +R Q   S+        + D K+  
Sbjct: 314 AVSLLAFMSGVRDEHLSFSF---GKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKRTD 373

Query: 326 -------DKKQRTDEGGRGRPDRGDHLKKFEKYTPTSIPQDLILMEIRNTNLLNVPRKLK 385
                  DK Q +    R R  + D  +KFEKYTPT++P + +LMEI++  LL  P ++K
Sbjct: 374 PKRERSGDKPQGSRWEKRDRSSQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMK 433

Query: 386 SNPDNRDKSQYCLFHRDHGHSTRNYIQQKDEIEALIRNGYLKEFTTKVEADQ 415
           ++   R K +YCLFHRDHGH+T++    K+E+E LIR GYLKE+  + +A Q
Sbjct: 434 ASSAKRSKGRYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPKATQ 478

[Close]

BLAST of Spg028561.1 vs. ExPASy TrEMBL
Match: A0A7N2N9G0 (Reverse transcriptase OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-45
Identity = 138/420 (32.86%), Postives = 206/420 (49.05%), Query Frame = 0


Query: 39  HSVESGTRSKGKKTDSMTSKVRGLRPTDRTILRSPEPSTLKGQVPKFPRSRPEL------ 98
           H +E   R K    ++  +   G    DR     P+ S    +  +   S P L      
Sbjct: 400 HDLEEQLRQKNAAPNNQGADQEG-TSADRRNQEGPQASNAPSKPERQNTSIPSLAEIAPP 459

Query: 99  LKLARAAEAKKNNQGDLQKLKDSGEQDLEELIDQVDPPFTKEVMKAEVPQKFKVPAFKPY 158
           L +A     K+  +  +  LK     DL++L+++ D PFT  V    +P KF++P    Y
Sbjct: 460 LVIAEMQAMKEQMEVMMNALKGRVSSDLDDLVNRTDSPFTATVNSYPLPSKFRMPQIDSY 519

Query: 159 DGNKDPVQHLNAYKSWMDFHGVSDAIRCRAFFFTLTGSVKHWFERL-KRIHQLFQGISPS 218
           DG KDP+ HL  +K+ M   GV+DAI CRAF  TL G+ + WF RL       F+ +S  
Sbjct: 520 DGVKDPLDHLETFKTLMHLQGVADAIMCRAFPTTLKGAARIWFSRLAPNSIGTFKELSAQ 579

Query: 219 IPCTAHGSQRQRKPHINLLTVKQQPGESLCDYITRFNDEALQVEGYSEGAALVAITAGLK 278
                 G  R +K    L+++KQ+  E+L  YI+RFN EAL V+   +   + A T GLK
Sbjct: 580 FTAHFIGGHRYKKSTACLMSMKQREDETLRAYISRFNKEALSVDEADDKILVAAFTNGLK 639

Query: 279 DERLLNSMEIHERRGIAQV----------------KEVRTRTQEVSSSDHDNKKDKKQRT 338
             + L S+  ++ + +++V                +E + R +E    +  ++  KK RT
Sbjct: 640 KGKFLFSLYKNDPKTMSEVLYRATKYMNAEDALLAREEKPRKRERQEDNRQDQGRKKTRT 699

Query: 339 D---EGGRGRPDRGDHLKKFEKYTPTSIPQDLILMEIRNTNLLNVPRKLKSNPDNRDKSQ 398
               E  R RP  G    +F  +TP + P D +LM+I++   L  P KLKS+P+ R + +
Sbjct: 700 GDRREERRPRPMGG----RFTSFTPLTAPVDQVLMQIKDEEALTFPGKLKSDPNKRSRDK 759

Query: 399 YCLFHRDHGHSTRNYIQQKDEIEALIRNGYLKEFTTKVEADQRWPRPTRDDLGKDDGEPP 433
           YC FHRDHGH T +    K +IEALIR G L+ F +K  AD     P +D   + D E P
Sbjct: 760 YCRFHRDHGHDTADCYDLKQQIEALIRQGKLQRFVSKERADP----PAQDQHPRRDNERP 810

[Close]

BLAST of Spg028561.1 vs. ExPASy TrEMBL
Match: A0A7N2LNH8 (Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-45
Identity = 120/339 (35.40%), Postives = 180/339 (53.10%), Query Frame = 0


Query: 109 LQKLKDSGEQDLEELIDQVDPPFTKEVMKAEVPQKFKVPAFKPYDGNKDPVQHLNAYKSW 168
           +  LK     DL++L+++ D PFT  V    +P KF++P+   YDG KDP+ HL  +K+ 
Sbjct: 116 MSALKGRVSSDLDDLVNRTDSPFTAAVNSFPLPNKFRMPSMDSYDGVKDPLDHLETFKTL 175

Query: 169 MDFHGVSDAIRCRAFFFTLTGSVKHWFERL-KRIHQLFQGISPSIPCTAHGSQRQRKPHI 228
           M   GV+DAI CRAF  TL G+ + WF R+       F+ +S        G  R +K   
Sbjct: 176 MHLQGVADAIMCRAFPTTLKGAARIWFSRIAPNSISTFKELSAQFTTHFIGGHRYKKSTA 235

Query: 229 NLLTVKQQPGESLCDYITRFNDEALQVEGYSEGAALVAITAGLKDERLLNSMEIHERRGI 288
            L+ +KQ+  E+L  YI+RFN EAL ++   +   + A T GLK  + L S+  ++ + +
Sbjct: 236 CLMNIKQREEETLRAYISRFNKEALSIDEADDKILVAAFTNGLKGGKFLFSLYKNDPKTM 295

Query: 289 AQV-----KEVRTRTQEVSSSDHDNKKDKKQ--RTDEG---GRGRPDRGDHLKK-----F 348
           ++V     K +      +S  D   K+D+++  R D+G   GR    R D   K     F
Sbjct: 296 SEVLYRATKYMNAEDALLSREDRPKKRDRQEDSRQDQGRKKGRMGDRREDRRPKPMGGRF 355

Query: 349 EKYTPTSIPQDLILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQQKD 408
             +TP + P D +LM+I++   L  P KLKS+P  R + +YC FHRDHGH T +    K 
Sbjct: 356 ASFTPLNAPIDQVLMQIKDEGSLTFPGKLKSDPSKRPRDKYCRFHRDHGHDTADCYDLKQ 415

Query: 409 EIEALIRNGYLKEFTTKVEADQRWPRPTRDDLGKDDGEP 432
           +IEALIR G L++F  K   DQ    P    L +++  P
Sbjct: 416 QIEALIRQGKLQKFVNKGRTDQ---PPQEQHLRRENERP 451

[Close]

BLAST of Spg028561.1 vs. ExPASy TrEMBL
Match: A0A7N2MG20 (Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-45
Identity = 120/339 (35.40%), Postives = 180/339 (53.10%), Query Frame = 0


Query: 109 LQKLKDSGEQDLEELIDQVDPPFTKEVMKAEVPQKFKVPAFKPYDGNKDPVQHLNAYKSW 168
           +  LK     DL++L+++ D PFT  V    +P KF++P+   YDG KDP+ HL  +K+ 
Sbjct: 116 MSALKGRVSSDLDDLVNRTDSPFTAAVNSFPLPNKFRMPSMDSYDGVKDPLDHLETFKTL 175

Query: 169 MDFHGVSDAIRCRAFFFTLTGSVKHWFERL-KRIHQLFQGISPSIPCTAHGSQRQRKPHI 228
           M   GV+DAI CRAF  TL G+ + WF R+       F+ +S        G  R +K   
Sbjct: 176 MHLQGVADAIMCRAFPTTLKGAARIWFSRIAPNSISTFKELSAQFTTHFIGGHRYKKSTA 235

Query: 229 NLLTVKQQPGESLCDYITRFNDEALQVEGYSEGAALVAITAGLKDERLLNSMEIHERRGI 288
            L+ +KQ+  E+L  YI+RFN EAL ++   +   + A T GLK  + L S+  ++ + +
Sbjct: 236 CLMNIKQREEETLRAYISRFNKEALSIDEADDKILVAAFTNGLKGGKFLFSLYKNDPKTM 295

Query: 289 AQV-----KEVRTRTQEVSSSDHDNKKDKKQ--RTDEG---GRGRPDRGDHLKK-----F 348
           ++V     K +      +S  D   K+D+++  R D+G   GR    R D   K     F
Sbjct: 296 SEVLYRATKYMNAEDALLSREDRPKKRDRQEDSRQDQGRKKGRMGDRREDRRPKPMGGRF 355

Query: 349 EKYTPTSIPQDLILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQQKD 408
             +TP + P D +LM+I++   L  P KLKS+P  R + +YC FHRDHGH T +    K 
Sbjct: 356 ASFTPLNAPIDQVLMQIKDEGSLTFPGKLKSDPSKRPRDKYCRFHRDHGHDTADCYDLKQ 415

Query: 409 EIEALIRNGYLKEFTTKVEADQRWPRPTRDDLGKDDGEP 432
           +IEALIR G L++F  K   DQ    P    L +++  P
Sbjct: 416 QIEALIRQGKLQKFVNKGRTDQ---PPQEQHLRRENERP 451

[Close]

BLAST of Spg028561.1 vs. ExPASy TrEMBL
Match: A0A7N2N013 (Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.8e-45
Identity = 120/339 (35.40%), Postives = 179/339 (52.80%), Query Frame = 0


Query: 109 LQKLKDSGEQDLEELIDQVDPPFTKEVMKAEVPQKFKVPAFKPYDGNKDPVQHLNAYKSW 168
           +  LK     DL++L+++ D PFT  V    +P KF++P+   YDG KDP+ HL  +K+ 
Sbjct: 116 MSALKGRVSSDLDDLVNRTDSPFTAAVNSFPLPSKFRMPSMDSYDGVKDPLDHLETFKTL 175

Query: 169 MDFHGVSDAIRCRAFFFTLTGSVKHWFERL-KRIHQLFQGISPSIPCTAHGSQRQRKPHI 228
           M   GV+DAI CRAF  TL G+ + WF R+       F+ +S        G  R +K   
Sbjct: 176 MHLQGVADAIMCRAFPTTLKGAARIWFSRIAPNSISTFKELSAQFTTHFIGGHRYKKSTA 235

Query: 229 NLLTVKQQPGESLCDYITRFNDEALQVEGYSEGAALVAITAGLKDERLLNSMEIHERRGI 288
            L+ +KQ+  E+L  YI+RFN EAL ++   +   + A T GLK  + L S+  ++ + +
Sbjct: 236 CLMNIKQREEETLRAYISRFNKEALSIDEADDKILVAAFTNGLKGGKFLFSLYKNDPKTM 295

Query: 289 AQV-----KEVRTRTQEVSSSDHDNKKDKKQ--RTDEG---GRGRPDRGDHLKK-----F 348
           ++V     K +      +S  D   K+D+ +  R D+G   GR    R D   K     F
Sbjct: 296 SEVLYRATKYMNAEDALLSREDRPKKRDRPEDSRQDQGRKKGRMGDRREDRRPKPMSGRF 355

Query: 349 EKYTPTSIPQDLILMEIRNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQQKD 408
             +TP + P D +LM+I++   L  P KLKS+P  R + +YC FHRDHGH T +    K 
Sbjct: 356 ANFTPLNAPIDQVLMQIKDEGSLTFPGKLKSDPSKRSRDKYCRFHRDHGHDTADCYDLKQ 415

Query: 409 EIEALIRNGYLKEFTTKVEADQRWPRPTRDDLGKDDGEP 432
           +IEALIR G L++F  K   DQ    P    L +++  P
Sbjct: 416 QIEALIRQGKLQKFVNKGRTDQ---PPQEQHLRRENERP 451

The following BLAST results are available for this feature:

BLAST of Spg028561.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158830.1	1.3e-62	37.86	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_024041095.1	5.5e-45	33.51	uncharacterized protein LOC112098853 [Citrus clementina]	[more]
XP_030959077.1	2.1e-44	33.33	uncharacterized protein LOC115981028 [Quercus lobata]	[more]
MQL77781.1	8.8e-43	31.80	hypothetical protein [Colocasia esculenta]	[more]
XP_030941654.1	1.5e-42	33.14	uncharacterized protein LOC115966587 [Quercus lobata]	[more]

BLAST of Spg028561.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028561.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWY0	6.3e-63	37.86	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A7N2N9G0	1.6e-45	32.86	Reverse transcriptase OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2LNH8	5.9e-45	35.40	Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2MG20	5.9e-45	35.40	Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2N013	7.8e-45	35.40	Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Spg028561.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 183..272 e-value: 3.3E-5 score: 24.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 413..436
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 413..430
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..334

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg028561	Spg028561	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg028561.1-cds	Spg028561.1-cds-scaffold7:14467011..14467483	CDS
Spg028561.1-cds	Spg028561.1-cds-scaffold7:14469139..14469735	CDS
Spg028561.1-cds	Spg028561.1-cds-scaffold7:14469812..14470052	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg028561.1	Spg028561.1-protein	polypeptide