Spg028541.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg028541.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold7: 12250839 .. 12253817 (-)
Sequence length	468
RNA-Seq Expression	Spg028541.1
Synteny	Spg028541.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTGTCGATTGGGAGATCAAGAACGATCAAGAACGAGAATCTTGGAGCATCGTGCTGTATTCTTCGAAAATCCAAGTAAGTGTTCCTGATCTTGAATATATTTACAGCATGCTTAATCTTAGTAATTTAGAAATTGTTTCTAATTTTGTTGCCAACGTATTGGTTTTTCTGAAATTGAAATTTAATTCGAGATTGGTCTTGTTTGCTTCCGCTGCCAAAGGGATTTCAACCCTTCAACACCTTTAGGAGCCATTTGAATGCAAAGGAAATGGTTTAATTCTTGCTGTTTTTAGTTTAAAAGCATGCTAAGTAGGTTTCCATTAATTATCTTAGGCCCTAGTAGCATTGCCTAATCTCTAGGAGCCCTTAGAATTCTAAAATGTGACTTTTTACTTGCTGTCCAGCAGCTGAAAAGCCTTATCTGGGGCCATTCGGCGAATACCCATTGCCCGTTGTGCCTTAGACATGGTTGCCCATGGTCTAAAGGTTTTGGGTTTTTAATTGGGGGAATTTTGAGTGGTTTTCCAGCAAGGAAATAGTTCTTTCGCGATTGTGTAACGACCCTGTTGGTATAGAAAATTTTCTTCAAATAATTGTCGAAGTTCGTGAAATTAAAATATGCTAATTTCATGAAATTAAATTGAATTTGGTTTAATTTAAACCCAAATTCATTAAGGATATTGGGTCAAAAGCCCAAATGCATTTCAAGCCCAAACCCATGGATGAGCCCAAATGGATTTTAGGCCCAAGCCCATGGATGGGCCCAATTGCAACCAAGCCCAAGCCCAAGCCCACGGAGGCCTTTAGGAAACTCTATAAATAGGTGGCATGACTTTGTTGGGTTTAATGTCCTATAAACTCGTAGTTTGTAAATCATTAAACATATTCTATTTCCAATAAAGACGTTATTGAGGTTATTCAGTAAGAGATGTTATTGAATATGTAAATTGCAAATGATTAACCTAAATCCAATAAACTAAGATCCTTGGCTATAAAATGAATACTCGAACTATATGTAGAGACATATCGTAGGATCAAGTTCAAGTTTATAGCCAAAATAGTCTATAGTATAAGGATACGGTTGGGTGCCTTATCCTGGGGACACTATGGACGCGGCCCACTTTGTATTAAGTACAAACGATGAGATCCTAAATCGTTCATGTAGAGACATGCGAGTGGGGGCATCCTATGCAATGAGTTTGCATAAGACTGGACCACGAAATAAGTCAATTTCTCTTTATAACGCCGTTTACTGAAGAAACTGACTGTTTCTCATAGATGACCTAGGTAACTCGTTCTTAATCATGAGCTAACTATGAACTCCTGTTTATACGAGATTATCCTTTGATCTGCATGGGTGAGAGTGGCCAGCATCGCCGACTCAACAAGCCTACCATTTTGGGGATAAGATCGAATAGATAGCTGGGGACATAGTTTCGCAAGACGGAATTCACTCCTACCCATTTCAGGGATAGCAGAGAGGTTGTTCCCTTAAGTACTAACTCCAGGACTTGAACAAGGGGCCCCACCCTCTCGTTGGATCGAGAGGGACTTAGGTTTGATGGTTGGACCACAAACCGATTGTTCATTAGAGGATTAGTGGAACTTAAGGAACAAGAAGTACTATAGGGGTGAAACGGTTATTTGACCTAGCTATAGCTACGAACAACCTGTGAAGGAACGACTTACTGAACATGGTTAAATCAAGTGGACGTAAATATATCTATAGTGAGGGGAGTGCAACTATCGGGCTATAGTGGAGTGTCCCGGTAGTTAACGAATGTTGGCTAGCTTAGATAATGAGATTAGTCGGTTAGCCTCGAATCGTTGGAGCCCATGATCTATAGGTCCATTAGGTCCCTCTACTAGCTCATATTGTATTAATGCTTAGATCATAATGATAGGAATCTTTGAATCGTTCAAAAACGGGAAATAGGGCTTTATCGTAAAAATGTGTTTGACACAATTTTTAATTATGAATTAAATAAGGAATTGAGAGATAAGGTATTTAAAAGTGTTTTAAATACCATGTATATGTATTAGGAATCATATACTATTAATGGCACTAGGTAAGAATGATTAATTAGATTAATCATGATAAATTACTTGGAAATGTCTCAATTAATAACCTAGAAATCAAATTCAATTTCAAATTGAATTAGGGAAAATTGCAAGCTGAAAATTCAAGAATGAAGATTCAATTAAGTGGATTTAGTGGCATTCCCACTCTTGCATGTTGATGCATAGTGGAAAACAACACAACCATGCACTAGTTGCATGTGTTGTGAATTAAACACCTAGAATCCACTTTGAGTTGCATTTTCACCATGTGTCTAGTGTCATGAAGCTTGTCTTTGCATGGAAGAGGTCTTTATAAGGAACTTGAATCAAATTCAAAAGATAGAGAGCAATTTACCTACTGTTATGCTGCTGGTTTTTCCTCTCAAACACACACACTTCCATAGATCTCTCAAAAGCTTGTTCCTCCAAGCATTCCCTTCCCTTTCCTTATCACTATAGACTCCCACAAGTCATTCTAGGCAAGGAGAATAGTAGAGAAGACACTAAAGGTTGTCCAAGAGAAGTTGGAGAAGGAAAACATCACAAGGAGTTCCTCTCAAGTGAGCTACAAAGAGGTTGGTACTCCTTTACTTTCTGTTCTGTTTTCTAGAACATGCATGCTTTAGGTACAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCGCATGTGTTATATGAAAACCTTCAGACTTCTCATTTGAGGAGGGCAAAAAGAAAGGAAGAAGAGAAAGCTCTCAGAAGAAACCGAAGATTGAAGCTCCTTCGGCAGAACCGAAGATCGAAGCTCAGATCCTCATCAAATCCAGCTGCAGAACTGAAGAACAAGGCTCCGATCATCTTCAAATCCCGACCCAGAACTGAACAACGAAGTCTAGATCCTCTTCAAATCCCGCTGCTGAATTGA

mRNA sequence

ATGGTGGTGTCGATTGGGAGATCAAGAACGATCAAGAACGAGAATCTTGGAGCATCGTGCTGTATTCTTCGAAAATCCAAACTCCCACAAGTCATTCTAGGCAAGGAGAATAGTAGAGAAGACACTAAAGGTTGTCCAAGAGAAGTTGGAGAAGGAAAACATCACAAGGAGTTCCTCTCAAGTACAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCGCATGTGTTATATGAAAACCTTCAGACTTCTCATTTGAGGAGGGCAAAAAGAAAGGAAGAAGAGAAAGCTCTCAGAAGAAACCGAAGATTGAAGCTCCTTCGGCAGAACCGAAGATCGAAGCTCAGATCCTCATCAAATCCAGCTGCAGAACTGAAGAACAAGGCTCCGATCATCTTCAAATCCCGACCCAGAACTGAACAACGAAGTCTAGATCCTCTTCAAATCCCGCTGCTGAATTGA

Coding sequence (CDS)

ATGGTGGTGTCGATTGGGAGATCAAGAACGATCAAGAACGAGAATCTTGGAGCATCGTGCTGTATTCTTCGAAAATCCAAACTCCCACAAGTCATTCTAGGCAAGGAGAATAGTAGAGAAGACACTAAAGGTTGTCCAAGAGAAGTTGGAGAAGGAAAACATCACAAGGAGTTCCTCTCAAGTACAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCGCATGTGTTATATGAAAACCTTCAGACTTCTCATTTGAGGAGGGCAAAAAGAAAGGAAGAAGAGAAAGCTCTCAGAAGAAACCGAAGATTGAAGCTCCTTCGGCAGAACCGAAGATCGAAGCTCAGATCCTCATCAAATCCAGCTGCAGAACTGAAGAACAAGGCTCCGATCATCTTCAAATCCCGACCCAGAACTGAACAACGAAGTCTAGATCCTCTTCAAATCCCGCTGCTGAATTGA

Protein sequence

MVVSIGRSRTIKNENLGASCCILRKSKLPQVILGKENSREDTKGCPREVGEGKHHKEFLSSTKLNVLSAFDLQLLPHVLYENLQTSHLRRAKRKEEEKALRRNRRLKLLRQNRRSKLRSSSNPAAELKNKAPIIFKSRPRTEQRSLDPLQIPLLN

Homology

The following BLAST results are available for this feature:

BLAST of Spg028541.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg028541.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg028541.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg028541.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg028541	Spg028541	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg028541.1-cds	Spg028541.1-cds-scaffold7:12250839..12251125	CDS
Spg028541.1-cds	Spg028541.1-cds-scaffold7:12251192..12251292	CDS
Spg028541.1-cds	Spg028541.1-cds-scaffold7:12253738..12253817	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg028541.1	Spg028541.1-protein	polypeptide