Spg027923.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg027923.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationscaffold2: 39665151 .. 39671974 (-)
Sequence length471
RNA-Seq ExpressionSpg027923.1
SyntenySpg027923.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCGACCAAGCAGTTGGCGAAGACCCGCGTGGAACGTTTGGTAGAGATCGAAGAACAGTTACTCTACCTGAGGGAAGTCCCTGATGCTATTCGGTTCGTGGAATCTCGGCTGGATGAGATTTCGACTAAAGCCGACAAAGTTGATGCGGTAGCTGGCCGTGTGGATGGGATGCCCATGCAGGAATTGATGATGAGGGTTGAGAACCTTGAAAGTAAAGCTACACGACCTGGTAGCTACGAGCGTGGTGATAGCTCGTCGGGCTCTGCAGCCCTGATGGAGGAGCGTGTCGATGGGTTAGACAGCTCCCAGAAAGTGATAGTCCAGATGGTTACGGACCTATCAGATGATGTGAAAGCTGCCCTCGACGTGGTCAGGGCCGAAGTGGCGGATCTGAGCGCCAGATTAAACCTCACGATGAAAGCAGTGGGGAACCAAGCCCCAACAGGGGGTGCGGTCCAGTTCAACAAAGTTAAAGTACCCGAGCCTAAACCCTTCTGTGGGGTTCGAGATGCAAAGGCTCTTGAGAATTTCATTTTTGATCTTGAACAATACTTTTGAGCGACGAACACTATGACCGAAGAGTCAAAGATAACATTGGCTACGATGCATCTTGCAGACGATGCAAAGTTGTGGTGGAGGTCCCGATTCATGGACATCCAAGATGGTCGTTGCACCATAGATAGTTGGGAAAAATTGAAACAAGAACTTCGTTCTCAGTTTTTCCCCGAGAATGTGGAAATTTTGGCAAGGCGGAAGCTAAGAGAGCTCAAGCATACAGGCAACATCCGAGATTATGTGAAACAGTTCTCTGGATTAATGTTGGACATTCGCGATATGTCAGAGAAAGACAAAGTTTTCTGTTTTGTCGAAGGATTGAAGCCGTGGGCAAAATCCAAACTTTACGAACAGCGAGTGCAAGATCTTTCTACCTCCTATGCAGCGGCAGAGCGACTGTTTGACCTCAGTAATGATCAGTCCCAAGACGTGAGACGGAATCCGGGCCCTTCTAATGGAGGAAACATAAATAATCGGCTAGGCTCCCCCAAAAGTGGGGGAGGAGACAGACAAGGAGGGGGAGATCGTAGACCCTTCCAGCAGAGAGGCGGAAACTCGTGGCGAGGGCCACACCAACAGAACAACTACTATCAGAGGCCCCTTTCGTGCTTCATATGTAAAGGGGCCCATCGGGTGTCTGATTGCCCGAAGCGGGCAGCCCTCCAAGCTTTTCAAGCCACTTTTGACACCGACCCCGAAGTTGAAGCGGAAGCCGCAGAGACTGAGGGACCACAAGCTGAAGCTGAGAACAACCCTCGAATGAGGGCACTGAAATTCCTCTCTACCCTGCAGAAGAAAGTGGGGGAGTCCAAAGAGCCGTTAGAAAGAGGACTCATGTACGTTGATGCATGGGTGAATCACAAGTCGGCCAAGAGCACGATGGTCGACTCGGGAGCCACCCATAACTTTATGACAGAAACGGAAGCGCGTCGGCTGAACTTGCGATGGGACAGAGACACAGGCAAAATGAAAGCTGTCAATTCGGCAGCCCTACCCATTATGGGGATAGCCAAGAGGGCCACAGTGAAGCTGGGTGATTGGAGTGGCCAAGCTGATTTCATGATCCTCAAGATGGATGACTTCGACATTGTGTTGGGGATGGAGTTCCTCCTCGAACACAAGGTGATACCGATGCCCCTAGCAAAGTGTTTAGTGATCACGGGATCCAGCCCCACTGTCGTTCAGGCCAATATCAAGCAACCAGGAGGAATAAGGATGATCTCAGCCCTTCAGCTGAAGAAGGGCCTTGCTCATGAAGAACCCACCTTTATGGCCATCCCCATAGTGACAGATGAGAGTGAGAAAGAAACAGTCCCTGAAGAGATCCAATGGGTTCTAGAAGAATTTCGCAGTGTCATACTTGACAGTTTACCGAAGAACTTACCTCCAAGGAGAGGGATTGATCACGAAATTGAGTTGTTGCCTGGGGCAAAGCCGCCCGCCAAGAATGCCTACCGTATGGCACCTCCCGAGTTAGTAGAACTTCGAAAGCAACTTGACGAGTTACTGAATGCGGGATTCATCTGCCCAGCAAAGGCTCCCTATGGGGCCCCAGTCTTGTTCCAAAAGAAGAAAGACGGAAGTTAACGTTTGTGTATTGATTATCGAGCGTTGAACAAACTGACTGTCCGAAACAAGTATCCTCTCCCAATCATAACAGATTTATTCGACCGCCTCCATGGGGCGAAGTACTTCTCGAAGCTGGATCTGAGATCAGGTTACTACCAAGTCCGCATTGCAGAAGGGGACGAGCCGAAGACAACATGTGTCACCCACTATGGGGCTTTCGAGTTCCTCGTTATGCCCTTTGGCCTTACAAACGCTCCGGCCACCTTCTGCACCCTAATGAATCAAGTTTTTCACGAATATCTCAACAAGTTTGTGGTTGTCTATCTGGATGACATCGTTGTGTATAGCCCGACCTTGGAAGAACATCAGGTTCACCTGCGACTTGTCTTTGAAAAGTTGAAACTGAATCAGTTGTATGTAAAGAGAGAGAAGTGCTCCTTCGCGCAGAAACGTATCAATTTTCTGGGACACGTGATCGAGTGTGGTAAGATCAGTATGGAAGATGGGAAGGTTGAAGCCATATGAGACTGGAAAGTGCCATCATCAGTGACCGAGTTGCATTCCTTTCTCGGATTAGCCAATTACTACAGGCGATTAGTGGAAGGATTCTCAAAACGAACAGGACCTCTGACAGACCTGTTGAAAAAGAGTAATGGTTGGAGTTGGACTTCAGCGTGTCAAACTTCCTTTGAGGACTTGAAGAAGGCGATGATGGAAGGACCCGTGCTCGGGATTGCAGATGTAAGCAAGCCCTTCGAAGTCGAAACGGACGCGTCCGATTTCGCTCTGGGTGGTGTCCTCCTCCAAGACGGCCACCCCATTGCTTATGAAAGTCGAAAGTTGAATGATGCTGAACGGAGGTATGTCGCCTCCGAGAAAGAAATGCTAGTTGTTGTGCACTGTCTAAGGGCTTGGAGACAGTACCTTTTGGGAGCCAAGTTCGTAGTCAATACCGACAATAGCTCCATCTGCCATTTCTTCAACCAACCGAGATTGTCATCCAAACAGGCGCGATGGCAAGAATTTCTCACAGATTTTGATTTCCAGTTCGAACACAAGCCTGGTAAGGCAAACCAAGCGGCGGACGCTTTGAGTCGGAAGAGCGAACATGCGGCCCTATGCATGTTAGCCCACTTGAAAGCGAGTAGGCTGAGTGGAACCGTCCGCGAGACAATTAAGGAACATCTGAAGAACGATACCGCAGCCCAAGCAATAATGAAGTTGGTTGAAGAAGAAAAGACTCGTCAGTTTTAGGTCGAAGACGGTTTGCTCCTAACTAAGGGCAACCGCCTGTATGTCCCTCGTTCGGGGAACCTCAGGAAGCTCTTAATTGAAGAATGTCACGATACACTGTGGGTCGGCCACTCTGGGTGGCAACGAACGTATGCGCTCGTCAAGCAGGGGTACTTCTGGCCAAGCCTTCGAGACGATGTAATGTTGTTTACCAAGACCTACCTCGTGTGCCAGCAAGACAAGGTGGAACGATCCAAGATAGTAGGGTTGCTGGAACCTCTGCCCGTTCCCTCAAGACCATGGGAGAGCGTATCTCTCGATTTCATCACTCATCTCCCTAAGATTGGAGAATTCGAATCAATTCTCGTGGTCGTTGACCGATTTTCGAAGTACGCCACGTTTATTCCGACTCCGAAGATGTGCTCAGCTGAGATGACGACACAGTTGTTTTTCAAGAATGTTGTCAAGTTATGGGGTGTACCCGAGAGTATAATTAGTGATCGAGATGCTCGATTCACTAGAACATTCTGGACGAAATTATTTAGATTACCGGGTTCTCATCTAAATATTTCCTCCAGCTACCACCCGCAGACAGATGGCCAAACAGAGCGATTCAACAGTATGCTCGAAGAGTACTTGCGTCATTTTATTGACGCCCGACAGAGGAATTATGCTGAGATGCTTGATGTTGCTCAGTTCAGTTTCAACTGCCAGAAGAGTTCAGCAACAGGAAAGACTCCGTTCGAGTTAGTATGCGGAAGACAGCCGTTGATGCCGCATGTAATTGACTATCCTTATGTGGGGAAGAGTCCCCAAGCTTACAACTTCACCAAGGAGTGGAGACAGACATCAGAAATAGCCCGAGCGTACTTAGAGAAGGCATCGAAGCGTATGAAAAAATGGTTCGATCAGAAACGACGGCCACTGGAATTCCAAGTGGGAGACAAAGTTCTGATCAAGCTGAGACCAGAACAGATCCGGTTCAGAGGGAAGAAAGACCAACACCTTGTCCGAAAATACGAAGGCCCTATCGAAGTGATCCAGAAGGTCAGTAAGACATCTTATAGGGTTCAGTTACCCTCGTGGATGAAGATTCACCTTGTCATCCACGTTAGTAACTCGAAGTCCTATCATCCTGACCTAGAAGACTCCGAGCGCAACTAAGTGACGTGGCCCCCGGTCACAATGCAAAACCTGAATGACAAAGAAGTAGAAGAAATTTTGGCAGATAGGATTCGTCGCACAGGTAAGCCTCGTCGAGACGTTCAAGAGTTCCTGGTGAAGTGGAAAGGGCTCCCGGATGCTGAGATTAGTTGGGAGCGAGTTGAAGACTTGAAGTCCGTTGCCATCAAGATCGCCGAGTTCGAGCAGCCTCGGTTGACAGGGACGTCAACCATTTAAGTGGGGGAGAGTGTCACGGTCATGCTTGTCCAAGGCGTGTTGCCCATGGCCGCATGCCCATGACAACCCATTCCCCTCATGCTTTAATTATATGTATTTCCTTTGTATCGCTTGTTTATTTTTCCTTGCATTTTTCAAGTGTATGACTCCTCGTGATTTTTATGTTTAAGTCTGCCAAGGCTAAAATGCTTAATAATATAATATAGGGGGGTACGACTAGTTGTCAAACCTTCCTACCCGGAGTTGTTCGCTATCAAGCTGTTGTTGTCCCTTTGCTTACTTGATAGTCTGTGCAACAAATATTCTTACAAAATGTTTTCAACTGTTTTCCAAAGCTTTTTCTCTAACCCCGTTTTCTAAAACCGTTTTCCAAGAACGGGGTGGAGGTTGTGAGATAGGCCCTTTGTGCCACCGGCGATCCGGAATTGAGTTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCGCACAATCACTTGCGAGTTCGAAAAGAGTGCGATTGTGACACTTCGCATAAATTCATGTGAAATTGGTGGCATGTATGTGGGGCATGTATGTTAAAAAAAGCGGTAGTTCAGAGATCATAGAGCCGACGACAACGACGATATTATAAAAAAAAATTGTAAAGCTTCCGCAGTAGCTTATAAACAAAGGAATATATATATATTCAAGATTGATTTTGACTTACTAATGGCGCGACAAAGAGGCTCGAAGAGAGATCTTCGCTCAAGGCTTACATAAAGAAAAAAAAATACCGGTCTGCGGGGGTTTGAGAAGTTTTTTTGTGGAAGGCTTTAATTTATAGTGGTGAATTACCAAATCCTAATTTGATTTGGATTTTAGTCAAATCATATCTTTTGAGCCTTATCAAATCAGGAATTCTAATTCAAATAATAATTCAAATGTGAAATTTGAATCAAATCAATTTGGAATAAAAATTCAAATTAATCCAAATTTTAAACAAAAGATAAATTGGATGAATTTTGAATTTGGTTTGAGTTGAATAAAATTGAATCGGGTATAGCTAAAATCTTACCTAGATCAAATTCAAATTATATTTGAATTCTATTCCTCAAACCAAAATTTTGGATAGAATTTAACATTACTTCAACTAAAATTTTTCAAGCCTTATTTGAAATTCAAGGTATTTGAGGTTGAGTTTATCTTGAGATAATTTGGGCCTAATCATAATTCGGTCCCAAATTAAACTCGAGTCAAATTCAAGATATAGTGAAATTACTCCAAAGTTACATAGAATTTGGACACAATTGAAATTCAATATGGAATTAAAATCTAATTGAGATTCAAATTGCAATTTGTCGCGAAGCAAGTGGGGTAAAAAAAAAAAAATTGATTCCAAATAATTTCTTTTCGAGATTCATCCACACATAATTTGTGCCTAAATCTGGAAAAGGAGGCATTTGTTGAAGGAGAAATTTTGACCAATCACAAATTGCCACGTCGTTACATGAGATTAATGACGAAATTATAATTAATTAAATTTGGGACCAATTATAAATTGACATGTGTCCCAAATTTAATTTGAAGACAAAGTTGGCCAATTATAAATTTATAGAGCCAAATTTCTATTTGATCAATTAATTAAAATTAAATTATTTTGATCAAATTAATTAATTTGACCAATTAATTAAAAAAAATTATTTGGATCAAATTTGGGTCTTTTAAATATTTGGGTCATATGGTTTTGGGTCAAATATGAATCAGACCCAAGACTAAATAGTTGAGCCCAAGACTAATAAAGCCCAAGCCCAAGTTGCTGGCCCAAAAGTCACCCGAGCCCATCCAGTGAGAACTCTATAAATAGAGGGGTTCTCTTCCATTCAAGGGGTCAGAATTTTGAAGCTCCAAGCCAGAGTCAAAGAATTCAGAGAAACTTCATCAAGATCGAAGACTGAAGACTGAAGACTCCTTGAAATCCGTAAGTTTCAAAGTGCTGAACACTTCTTGAAGATTGAAGACTCCTTCAAGATTGGAAGACTTCAAGCTCCAAGAATCAGTTGAAGCTCCAGACTCGAGGTCAAGCGTTCCAGCCCTCGAGTGA

mRNA sequence

ATGTCGTCGACCAAGCAGTTGGCGAAGACCCGCGTGGAACGTTTGGTAGAGATCGAAGAACAGTTACTCTACCTGAGGGAAGTCCCTGATGCTATTCGGTTCGTGGAATCTCGGCTGGATGAGATTTCGACTAAAGCCGACAAAGTTGATGCGGTAGCTGGCCGTGTGGATGGGATGCCCATGCAGGAATTGATGATGAGGGTTGAGAACCTTGAAAAACGGGGTGGAGGTTGTGAGATAGGCCCTTTGTGCCACCGGCGATCCGGAATTGAGTTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCGCACAATCACTTGCGAGTTCGAAAAGAGTGCGATTGTGACACTTCGCATAAATTCATGTGAAATTGGTGGCATATTGAAGACTCCTTCAAGATTGGAAGACTTCAAGCTCCAAGAATCAGTTGAAGCTCCAGACTCGAGGTCAAGCGTTCCAGCCCTCGAGTGA

Coding sequence (CDS)

ATGTCGTCGACCAAGCAGTTGGCGAAGACCCGCGTGGAACGTTTGGTAGAGATCGAAGAACAGTTACTCTACCTGAGGGAAGTCCCTGATGCTATTCGGTTCGTGGAATCTCGGCTGGATGAGATTTCGACTAAAGCCGACAAAGTTGATGCGGTAGCTGGCCGTGTGGATGGGATGCCCATGCAGGAATTGATGATGAGGGTTGAGAACCTTGAAAAACGGGGTGGAGGTTGTGAGATAGGCCCTTTGTGCCACCGGCGATCCGGAATTGAGTTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCGCACAATCACTTGCGAGTTCGAAAAGAGTGCGATTGTGACACTTCGCATAAATTCATGTGAAATTGGTGGCATATTGAAGACTCCTTCAAGATTGGAAGACTTCAAGCTCCAAGAATCAGTTGAAGCTCCAGACTCGAGGTCAAGCGTTCCAGCCCTCGAGTGA

Protein sequence

MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMPMQELMMRVENLEKRGGGCEIGPLCHRRSGIELADLLVGESKCRTITCEFEKSAIVTLRINSCEIGGILKTPSRLEDFKLQESVEAPDSRSSVPALE
Homology
[Close]
BLAST of Spg027923.1 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-18
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 0 

Query: 1   MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMP 60
           MS+TKQL K+ ++RLVEIEE+LL+LRE+PD +R+VESRLDEISTKAD +D V  R+DG+ 
Sbjct: 1   MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61  MQELMMRVENLE---KRGGGCEIG-----PLCHRRSGIELADL 96
           ++ELM+RVE LE   KR    E G      + H    +E  D+
Sbjct: 61  IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDI 103

[Close]
BLAST of Spg027923.1 vs. NCBI nr
Match: XP_022150099.1 (uncharacterized protein LOC111018360 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 3.3e-16
Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 1  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMP 60
          MS+TKQL+K+ V+RLVEIEEQLLYLREVPD +R +E+R+DE S K  ++DAV  R+DG+P
Sbjct: 1  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDFLRLLEARVDEFSEKFGEIDAVNARIDGLP 60

Query: 61 MQELMMRVENLEKR 75
          +Q++ MRVE LE +
Sbjct: 61 IQDIAMRVETLESK 74

[Close]
BLAST of Spg027923.1 vs. NCBI nr
Match: XP_022154605.1 (uncharacterized protein LOC111021829 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-16
Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 1  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMP 60
          MS+TKQL+K+ V+RLVEIEEQLLYLREVPD++R +E+R+DE S K  ++DAV  RVDG+P
Sbjct: 1  MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60

Query: 61 MQELMMRVENLEKR 75
          +Q++ MRVE  E +
Sbjct: 61 IQDIAMRVETXESK 74

[Close]
BLAST of Spg027923.1 vs. NCBI nr
Match: KAA0065910.1 (senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK15107.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 7.3e-16
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 1  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMP 60
          MSS     K++ +RLVEIEEQ+LYL EVPD+IR++ESRLDEIS K D +DAVAGR++G+P
Sbjct: 1  MSSANPSGKSQKDRLVEIEEQMLYLVEVPDSIRYLESRLDEISEKIDTIDAVAGRIEGLP 60

Query: 61 MQELMMRVENLE 73
          +QEL+ RVE LE
Sbjct: 61 IQELLARVETLE 72

[Close]
BLAST of Spg027923.1 vs. NCBI nr
Match: KAA0061346.1 (uncharacterized protein E6C27_scaffold749G00290 [Cucumis melo var. makuwa] >TYK14699.1 uncharacterized protein E5676_scaffold692G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMP 60
          MSS+    K + +RLVEIEEQ+LYL EVPD+IR++ESR+DEIS KAD +DAVAGRV+G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKADTIDAVAGRVEGLP 60

Query: 61 MQELMMRVENLEK 74
          +QEL+ RV+ LE+
Sbjct: 61 IQELLARVDALEE 73

[Close]
BLAST of Spg027923.1 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.9e-18
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 0 

Query: 1   MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMP 60
           MS+TKQL K+ ++RLVEIEE+LL+LRE+PD +R+VESRLDEISTKAD +D V  R+DG+ 
Sbjct: 1   MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61  MQELMMRVENLE---KRGGGCEIG-----PLCHRRSGIELADL 96
           ++ELM+RVE LE   KR    E G      + H    +E  D+
Sbjct: 61  IRELMLRVETLEDKVKRTDNLERGESSSSSIAHMEERVEEIDI 103

[Close]
BLAST of Spg027923.1 vs. ExPASy TrEMBL
Match: A0A6J1D906 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 1  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMP 60
          MS+TKQL+K+ V+RLVEIEEQLLYLREVPD +R +E+R+DE S K  ++DAV  R+DG+P
Sbjct: 1  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDFLRLLEARVDEFSEKFGEIDAVNARIDGLP 60

Query: 61 MQELMMRVENLEKR 75
          +Q++ MRVE LE +
Sbjct: 61 IQDIAMRVETLESK 74

[Close]
BLAST of Spg027923.1 vs. ExPASy TrEMBL
Match: A0A6J1DK29 (uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021829 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 1  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMP 60
          MS+TKQL+K+ V+RLVEIEEQLLYLREVPD++R +E+R+DE S K  ++DAV  RVDG+P
Sbjct: 1  MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60

Query: 61 MQELMMRVENLEKR 75
          +Q++ MRVE  E +
Sbjct: 61 IQDIAMRVETXESK 74

[Close]
BLAST of Spg027923.1 vs. ExPASy TrEMBL
Match: A0A5A7VFC8 (Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00350 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.5e-16
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 1  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMP 60
          MSS     K++ +RLVEIEEQ+LYL EVPD+IR++ESRLDEIS K D +DAVAGR++G+P
Sbjct: 1  MSSANPSGKSQKDRLVEIEEQMLYLVEVPDSIRYLESRLDEISEKIDTIDAVAGRIEGLP 60

Query: 61 MQELMMRVENLE 73
          +QEL+ RVE LE
Sbjct: 61 IQELLARVETLE 72

[Close]
BLAST of Spg027923.1 vs. ExPASy TrEMBL
Match: A0A5A7V4C9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00280 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.0e-16
Identity = 47/73 (64.38%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1  MSSTKQLAKTRVERLVEIEEQLLYLREVPDAIRFVESRLDEISTKADKVDAVAGRVDGMP 60
          MSS+    K + +RLVEIEEQ+LYL EVPD+IR++ESR+DEIS KAD +DAVAGRV+G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKADTIDAVAGRVEGLP 60

Query: 61 MQELMMRVENLEK 74
          +QEL+ RV+ LE+
Sbjct: 61 IQELLARVDALEE 73

The following BLAST results are available for this feature:
BLAST of Spg027923.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155185.16.0e-1853.40uncharacterized protein LOC111022320 [Momordica charantia][more]
XP_022150099.13.3e-1662.16uncharacterized protein LOC111018360 [Momordica charantia][more]
XP_022154605.14.3e-1662.16uncharacterized protein LOC111021829 [Momordica charantia][more]
KAA0065910.17.3e-1665.28senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] >TYK15107... [more]
KAA0061346.11.2e-1564.38uncharacterized protein E6C27_scaffold749G00290 [Cucumis melo var. makuwa] >TYK1... [more]
BLAST of Spg027923.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg027923.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DLQ62.9e-1853.40uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1D9061.6e-1662.16Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1[more]
A0A6J1DK292.1e-1662.16uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A5A7VFC83.5e-1665.28Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7V4C96.0e-1664.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg027923.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg027923Spg027923gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg027923.1-cdsSpg027923.1-cds-scaffold2:39665151..39665241CDS
Spg027923.1-cdsSpg027923.1-cds-scaffold2:39666674..39666836CDS
Spg027923.1-cdsSpg027923.1-cds-scaffold2:39671758..39671974CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg027923.1Spg027923.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding