Spg024957.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg024957.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold12: 14285016 .. 14289186 (-)
Sequence length699
RNA-Seq ExpressionSpg024957.1
SyntenySpg024957.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACTCATTGCACAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACTTGGTGTCACCAGGATAAGGTACCCAGCCTCATCCCTATACTATAGACCTTTTAGGTTGTTACTTGGACACTGATCCCCGTATGTCCCCACATACTAGTCCAAGTTTCATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTGTATTAATGCAAACTCGATTATTCAATAACCAAATTACTGAATTACTCAAATAACACTTTATTGAGATCGATTAATTTGTTTCATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAGAGACAACCCTTGATAGGCCTAGGATGCATGTTAAAGGTTGTAGGAATTAGATTCGAATTGCATTTGAATTTAGGTAATACAATTTCGGACCCACGATCCCAAAGCGGCTAGTTTAAATAGGTGATTGTCAAATTTCTTAATCTAAAACTAGTTAGATATAATTTAGTGACCATTGCGAGGTCTCGGATGGTAGCTATTTTATGTATGAGGGGTGGCGAGCGATAAAGAATTTATTAATTAATCTTGTTAATTGCAGAATTCACGGTTAGCAAATTAATTAGCACAGGTTAGTGTAGGGGGGCCCTCCGAGTAACCAAGAAGCCGACCGGACTAATGAAATCAACATAGAATAATTATTAGAGAAAACTAGGAAGCCAAACGAAATAGAATCAAGCATAAGAAATCCCAATCCAGCGATCCCTTTCATGTTATTGATTTTCGTCTTATTTCTCTTCTGCATGCTTTATTTTGCCTCTTTTAAATTCAGCATTTATTTATTTTTGCTTGTCCTTCGTTCCAAAAATCCCCTTGTTTTATTAGCGCAAGATTCTACACTTACTAGGTCCCCTTCCCCGTGTTCGACTGTTGCCGACTATTCGCCGTTTTACGACTTTCACACCGCAAGCGCACGGGTCGTCACAAGTAATATAAAACGGTAGGTAATACCGAGTATCGAATCCACAGGGAGGCGAAGCGAAATTTAAGCAAGCAAAGATTCCTAGAGCACTAAAAATACTTGGGATAAATAATATTTAGGGACCAGATCATGCAATCAAAGAAAATTAAAAATCAAAACAATTAAAGAGAAAATTTGATCAATCGATAAAAATAAAATACGGAGACAGAGTTTTCTAATGGGAAGAGGGGTCTTGAAAATCAATTATTAGCTAAACAATTGCTACAATTGTCCTATCTCATCGCCAACTAATTATACTCCTAGAATCTCCGTTATTAACATAGGCTCTCCTGTCGGTCTCCCCTAATTGTAATTAATTCATTTTAACAACCTAAGTGTCCTTAGCGCCATTAAAAATCATTAATTATTACGCTCTGATTCATTTAAGGAATCTAAGTTTAATCAACTAATCCCGTTGTCACGACGGGCAATTAAACTAGTTGCATGGATTATGATCCTAACTTCTCTCCGTCGAGTTTCCATTAAGAATCAGATCAATACACAATTGGCCAGATTGCATAAAGCATTAAGCACATCCATACAAATAATTAGGACATAAGGGCTAGAGATAGGCAATTATAACAATATTTAAACTATAATTTCATTTCAAGACCCCAAATTGGGGTTTAGCTATTCATAGCTAAAATATTCACAATAATTACAATGGAAAGCATAATAAAAGGGAAGGAATTGACCGTTGAAGTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGAAACAAATTATAGATCTCAATAAAGTGTTATTTGAGTAATTTAGTAATTTGGTTATTGAATAATCGAGTTTGCATTAATAAACCCTAAATCCAATAAACTAAGATCCAAGGTTGTTTAAATGAAACTTGGACTAGTATGTGGGGACATACGGGGATCAGTGTCCAAGTAACAACCTAAATGGTCTATAGTATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAGATGTAACGCCGTTAACTAGTTTAGGTTTCTATTTCAATAGGATGACCTAGGTAACTCAATCTCAATCCTGAGTCTGTTATGAACCCCTTCCAGGAGGGACTGTCCATAGATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCTCCTATTGGGGTAAGTAGATGTGTGTTCCCTTAAGGGCTGATTCTAGGGCTTGAACAAAGGCGCGCCGTCCTCTCCTAGCCTGAGAGGAACTCCTGTTTAGTGGTTGGACCCTAAACAACTTGTTCATTAGAGGAATCAGTGGTACTTAAGGAACCAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGAACACACGTGAAGGATTGACTTACTGCTTGGTCGATATCCGTGGACACAGAAATATTCTATAGTGAGAAGAGTGCAGCTGTGGGTCTTTAGTGGAGTGACCCACAGTTAACGAATGTTGACTAAACTTGGTCAATGAGTTTGGCCAATTAGTCTCGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACTGGTAGCTCGTAAAGAGACTTGAGGCAATTAAGTATAAATTGTAAATTGAAAGTGTTCAATTTATTTGGGGAATCGTATAATGTATATTGATGCATTATAATATAAAGTTTATGAAACTTTATAATATAATTTTTGAATTAATTAATTCTTGAGAGAAAGTATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAACTTTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGTAAATTAATTAATTATGGAATTAATTAATTATTTATTAAAATTAGAGACCCTTTCCTATTAGGAAAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGAAATTAATTAATTATGGAATTAATTAATTATTTATTAAAATTAGAGATTTTTTCCTATTAGGAAAAGGTCTCCCTTTTCATATTAGGAAAAAGGTCTTGGCCTTTACTATATATAGGACCCCTGGGGTGGGGTGAAAGGTATCTCATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAGGCTCCCACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTGTAGCCATAGTGGTGGTGTTCGCACTAGTTCGTGATTAATTCACAAGCAGTTGGTGAATTTAATCTGAGTCGTCAGCGAGAGTAAGTAATTTGTTACTTTATAAATTAGATTTATATCTAATATTTTTGTATGCTTAGCCTTAATATATATTTAGAATAGTTCTAATATTATTGCCAATGTATTGGTATTTTAGATTAAACAAAATTAATTACGAATCGGTCCCAATCACGCTTCCGCTTTACGGAATTACGGAATTCCAATCCTTCAATTGGTATCAGAGCCGATCGTAGATCTAATTTTTTTTCTCTAAAATTTGCCTTGGCTATTGGTGGGATTAATTAATACATAATGTATGTATGATTTGCATTGAACTGTTTAGGTTAATTTTATGGCCATAGATTTTACTATTTTTATGTGATTTGATCATGTAAGGGCCCGGTGTTTCGGGTATTTTATGTAAAATCGAGTCCTATGTAAGTCCGGGTCTAGAATAGGTTTTTATGAAATAAAAATCGGAGAAATTGCGACGCTGTCACGATTACAGCACGCGCTAGAAATTCGCAACAGGACGGTTCAAGGCTGTTGGGCGGTCCGATTCACGCGGTCTGGCTGGGCTGGGACCAATTTGTTCCGGTTCAGCTGGAATTTAGCTCGGTTCGTGATTTTCGTAGCTGGTTCGAAGTGGTTCGGGTTGGTTCAGGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTAAGGATAGAATATAG

mRNA sequence

ATGCAAACTCATTGCACAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACTTGGTGTCACCAGGATAAGGTCCCCTTCCCCGTGTTCGACTGTTGCCGACTATTCGCCGTTTTACGACTTTCACACCGCAAGCGCACGGGTCGTCACAAGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCTCCTATTGGGGTCCATTAGGTCCCACTGGTAGCTCAATTCTCCCAAAGGCTCCCACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTCACGCGCTAGAAATTCGCAACAGGACGGTTCAAGGCTGTTGGGCGGTCCGATTCACGCGGTCTGGCTGGGCTGGGACCAATTTGTTCCGGTTCAGCTGGAATTTAGCTCGGTTCGTGATTTTCGTAGCTGGTTCGAAGTGGTTCGGGTTGGTTCAGGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTAAGGATAGAATATAG

Coding sequence (CDS)

ATGCAAACTCATTGCACAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACTTGGTGTCACCAGGATAAGGTCCCCTTCCCCGTGTTCGACTGTTGCCGACTATTCGCCGTTTTACGACTTTCACACCGCAAGCGCACGGGTCGTCACAAGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCTCCTATTGGGGTCCATTAGGTCCCACTGGTAGCTCAATTCTCCCAAAGGCTCCCACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTCACGCGCTAGAAATTCGCAACAGGACGGTTCAAGGCTGTTGGGCGGTCCGATTCACGCGGTCTGGCTGGGCTGGGACCAATTTGTTCCGGTTCAGCTGGAATTTAGCTCGGTTCGTGATTTTCGTAGCTGGTTCGAAGTGGTTCGGGTTGGTTCAGGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTAAGGATAGAATATAG

Protein sequence

MQTHCTGYPHPHVSYMDALDHCICIEYKVGRITWCHQDKVPFPVFDCCRLFAVLRLSHRKRTGRHKDKAGYLILVTLCDTTHLVFDTDAMIQSIHICMGESGQFADSISLPFQGQDRMGAGNITVQDGIHSFSYWGPLGPTGSSILPKAPTSLLPLEVSESYRSRARNSQQDGSRLLGGPIHAVWLGWDQFVPVQLEFSSVRDFRSWFEVVRVGSGGLDQYLELQKDFKDRI
Homology
[Close]
BLAST of Spg024957.1 vs. NCBI nr
Match: TYJ98643.1 (hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-05
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 1  MQTHCTGYPHPHVSYMDALDHCICIEYK 29
          MQTHC GYPH HV+YMDALD C+CI+YK
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYK 28

[Close]
BLAST of Spg024957.1 vs. NCBI nr
Match: KAA0047449.1 (hypothetical protein E6C27_scaffold498G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-05
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 1  MQTHCTGYPHPHVSYMDALDHCICIEYK 29
          MQTHC GYPH HV+YMDALD C+CI+YK
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYK 28

[Close]
BLAST of Spg024957.1 vs. ExPASy TrEMBL
Match: A0A5A7U1U5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00520 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-05
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 1  MQTHCTGYPHPHVSYMDALDHCICIEYK 29
          MQTHC GYPH HV+YMDALD C+CI+YK
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYK 28

[Close]
BLAST of Spg024957.1 vs. ExPASy TrEMBL
Match: A0A5D3BHA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00280 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-05
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 1  MQTHCTGYPHPHVSYMDALDHCICIEYK 29
          MQTHC GYPH HV+YMDALD C+CI+YK
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYK 28

The following BLAST results are available for this feature:
BLAST of Spg024957.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ98643.16.6e-0578.57hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa][more]
KAA0047449.16.6e-0578.57hypothetical protein E6C27_scaffold498G00520 [Cucumis melo var. makuwa][more]
BLAST of Spg024957.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024957.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U1U53.2e-0578.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BHA63.2e-0578.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg024957.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg024957Spg024957gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg024957.1-cdsSpg024957.1-cds-scaffold12:14285016..14285224CDS
Spg024957.1-cdsSpg024957.1-cds-scaffold12:14285770..14285828CDS
Spg024957.1-cdsSpg024957.1-cds-scaffold12:14286414..14286438CDS
Spg024957.1-cdsSpg024957.1-cds-scaffold12:14286814..14286934CDS
Spg024957.1-cdsSpg024957.1-cds-scaffold12:14287119..14287206CDS
Spg024957.1-cdsSpg024957.1-cds-scaffold12:14288177..14288256CDS
Spg024957.1-cdsSpg024957.1-cds-scaffold12:14289070..14289186CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg024957.1Spg024957.1-proteinpolypeptide