Spg024957 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024957
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold12: 14285016 .. 14289186 (-)
RNA-Seq Expression	Spg024957
Synteny	Spg024957

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACTCATTGCACAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACTTGGTGTCACCAGGATAAGGTACCCAGCCTCATCCCTATACTATAGACCTTTTAGGTTGTTACTTGGACACTGATCCCCGTATGTCCCCACATACTAGTCCAAGTTTCATTTAAACAACCTTGGATCTTAGTTTATTGGATTTAGGGTGTATTAATGCAAACTCGATTATTCAATAACCAAATTACTGAATTACTCAAATAACACTTTATTGAGATCGATTAATTTGTTTCATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAGAGACAACCCTTGATAGGCCTAGGATGCATGTTAAAGGTTGTAGGAATTAGATTCGAATTGCATTTGAATTTAGGTAATACAATTTCGGACCCACGATCCCAAAGCGGCTAGTTTAAATAGGTGATTGTCAAATTTCTTAATCTAAAACTAGTTAGATATAATTTAGTGACCATTGCGAGGTCTCGGATGGTAGCTATTTTATGTATGAGGGGTGGCGAGCGATAAAGAATTTATTAATTAATCTTGTTAATTGCAGAATTCACGGTTAGCAAATTAATTAGCACAGGTTAGTGTAGGGGGGCCCTCCGAGTAACCAAGAAGCCGACCGGACTAATGAAATCAACATAGAATAATTATTAGAGAAAACTAGGAAGCCAAACGAAATAGAATCAAGCATAAGAAATCCCAATCCAGCGATCCCTTTCATGTTATTGATTTTCGTCTTATTTCTCTTCTGCATGCTTTATTTTGCCTCTTTTAAATTCAGCATTTATTTATTTTTGCTTGTCCTTCGTTCCAAAAATCCCCTTGTTTTATTAGCGCAAGATTCTACACTTACTAGGTCCCCTTCCCCGTGTTCGACTGTTGCCGACTATTCGCCGTTTTACGACTTTCACACCGCAAGCGCACGGGTCGTCACAAGTAATATAAAACGGTAGGTAATACCGAGTATCGAATCCACAGGGAGGCGAAGCGAAATTTAAGCAAGCAAAGATTCCTAGAGCACTAAAAATACTTGGGATAAATAATATTTAGGGACCAGATCATGCAATCAAAGAAAATTAAAAATCAAAACAATTAAAGAGAAAATTTGATCAATCGATAAAAATAAAATACGGAGACAGAGTTTTCTAATGGGAAGAGGGGTCTTGAAAATCAATTATTAGCTAAACAATTGCTACAATTGTCCTATCTCATCGCCAACTAATTATACTCCTAGAATCTCCGTTATTAACATAGGCTCTCCTGTCGGTCTCCCCTAATTGTAATTAATTCATTTTAACAACCTAAGTGTCCTTAGCGCCATTAAAAATCATTAATTATTACGCTCTGATTCATTTAAGGAATCTAAGTTTAATCAACTAATCCCGTTGTCACGACGGGCAATTAAACTAGTTGCATGGATTATGATCCTAACTTCTCTCCGTCGAGTTTCCATTAAGAATCAGATCAATACACAATTGGCCAGATTGCATAAAGCATTAAGCACATCCATACAAATAATTAGGACATAAGGGCTAGAGATAGGCAATTATAACAATATTTAAACTATAATTTCATTTCAAGACCCCAAATTGGGGTTTAGCTATTCATAGCTAAAATATTCACAATAATTACAATGGAAAGCATAATAAAAGGGAAGGAATTGACCGTTGAAGTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGAAACAAATTATAGATCTCAATAAAGTGTTATTTGAGTAATTTAGTAATTTGGTTATTGAATAATCGAGTTTGCATTAATAAACCCTAAATCCAATAAACTAAGATCCAAGGTTGTTTAAATGAAACTTGGACTAGTATGTGGGGACATACGGGGATCAGTGTCCAAGTAACAACCTAAATGGTCTATAGTATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATGTAGGAGACATGCGGGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAGATGTAACGCCGTTAACTAGTTTAGGTTTCTATTTCAATAGGATGACCTAGGTAACTCAATCTCAATCCTGAGTCTGTTATGAACCCCTTCCAGGAGGGACTGTCCATAGATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCTCCTATTGGGGTAAGTAGATGTGTGTTCCCTTAAGGGCTGATTCTAGGGCTTGAACAAAGGCGCGCCGTCCTCTCCTAGCCTGAGAGGAACTCCTGTTTAGTGGTTGGACCCTAAACAACTTGTTCATTAGAGGAATCAGTGGTACTTAAGGAACCAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGAACACACGTGAAGGATTGACTTACTGCTTGGTCGATATCCGTGGACACAGAAATATTCTATAGTGAGAAGAGTGCAGCTGTGGGTCTTTAGTGGAGTGACCCACAGTTAACGAATGTTGACTAAACTTGGTCAATGAGTTTGGCCAATTAGTCTCGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACTGGTAGCTCGTAAAGAGACTTGAGGCAATTAAGTATAAATTGTAAATTGAAAGTGTTCAATTTATTTGGGGAATCGTATAATGTATATTGATGCATTATAATATAAAGTTTATGAAACTTTATAATATAATTTTTGAATTAATTAATTCTTGAGAGAAAGTATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAACTTTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGTAAATTAATTAATTATGGAATTAATTAATTATTTATTAAAATTAGAGACCCTTTCCTATTAGGAAAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGAAATTAATTAATTATGGAATTAATTAATTATTTATTAAAATTAGAGATTTTTTCCTATTAGGAAAAGGTCTCCCTTTTCATATTAGGAAAAAGGTCTTGGCCTTTACTATATATAGGACCCCTGGGGTGGGGTGAAAGGTATCTCATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAGGCTCCCACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTGTAGCCATAGTGGTGGTGTTCGCACTAGTTCGTGATTAATTCACAAGCAGTTGGTGAATTTAATCTGAGTCGTCAGCGAGAGTAAGTAATTTGTTACTTTATAAATTAGATTTATATCTAATATTTTTGTATGCTTAGCCTTAATATATATTTAGAATAGTTCTAATATTATTGCCAATGTATTGGTATTTTAGATTAAACAAAATTAATTACGAATCGGTCCCAATCACGCTTCCGCTTTACGGAATTACGGAATTCCAATCCTTCAATTGGTATCAGAGCCGATCGTAGATCTAATTTTTTTTCTCTAAAATTTGCCTTGGCTATTGGTGGGATTAATTAATACATAATGTATGTATGATTTGCATTGAACTGTTTAGGTTAATTTTATGGCCATAGATTTTACTATTTTTATGTGATTTGATCATGTAAGGGCCCGGTGTTTCGGGTATTTTATGTAAAATCGAGTCCTATGTAAGTCCGGGTCTAGAATAGGTTTTTATGAAATAAAAATCGGAGAAATTGCGACGCTGTCACGATTACAGCACGCGCTAGAAATTCGCAACAGGACGGTTCAAGGCTGTTGGGCGGTCCGATTCACGCGGTCTGGCTGGGCTGGGACCAATTTGTTCCGGTTCAGCTGGAATTTAGCTCGGTTCGTGATTTTCGTAGCTGGTTCGAAGTGGTTCGGGTTGGTTCAGGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTAAGGATAGAATATAG

mRNA sequence

ATGCAAACTCATTGCACAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACTTGGTGTCACCAGGATAAGGTCCCCTTCCCCGTGTTCGACTGTTGCCGACTATTCGCCGTTTTACGACTTTCACACCGCAAGCGCACGGGTCGTCACAAGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCTCCTATTGGGGTCCATTAGGTCCCACTGGTAGCTCAATTCTCCCAAAGGCTCCCACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTCACGCGCTAGAAATTCGCAACAGGACGGTTCAAGGCTGTTGGGCGGTCCGATTCACGCGGTCTGGCTGGGCTGGGACCAATTTGTTCCGGTTCAGCTGGAATTTAGCTCGGTTCGTGATTTTCGTAGCTGGTTCGAAGTGGTTCGGGTTGGTTCAGGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTAAGGATAGAATATAG

Coding sequence (CDS)

ATGCAAACTCATTGCACAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACTTGGTGTCACCAGGATAAGGTCCCCTTCCCCGTGTTCGACTGTTGCCGACTATTCGCCGTTTTACGACTTTCACACCGCAAGCGCACGGGTCGTCACAAGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATATTTGTATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCTCCTATTGGGGTCCATTAGGTCCCACTGGTAGCTCAATTCTCCCAAAGGCTCCCACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTCACGCGCTAGAAATTCGCAACAGGACGGTTCAAGGCTGTTGGGCGGTCCGATTCACGCGGTCTGGCTGGGCTGGGACCAATTTGTTCCGGTTCAGCTGGAATTTAGCTCGGTTCGTGATTTTCGTAGCTGGTTCGAAGTGGTTCGGGTTGGTTCAGGCGGTCTAGACCAGTATTTGGAGCTGCAGAAGGACTTTAAGGATAGAATATAG

Protein sequence

MQTHCTGYPHPHVSYMDALDHCICIEYKVGRITWCHQDKVPFPVFDCCRLFAVLRLSHRKRTGRHKDKAGYLILVTLCDTTHLVFDTDAMIQSIHICMGESGQFADSISLPFQGQDRMGAGNITVQDGIHSFSYWGPLGPTGSSILPKAPTSLLPLEVSESYRSRARNSQQDGSRLLGGPIHAVWLGWDQFVPVQLEFSSVRDFRSWFEVVRVGSGGLDQYLELQKDFKDRI

Homology

[Close]

BLAST of Spg024957 vs. NCBI nr
Match: TYJ98643.1 (hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-05
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1  MQTHCTGYPHPHVSYMDALDHCICIEYK 29
          MQTHC GYPH HV+YMDALD C+CI+YK
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYK 28

[Close]

BLAST of Spg024957 vs. NCBI nr
Match: KAA0047449.1 (hypothetical protein E6C27_scaffold498G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-05
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1  MQTHCTGYPHPHVSYMDALDHCICIEYK 29
          MQTHC GYPH HV+YMDALD C+CI+YK
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYK 28

[Close]

BLAST of Spg024957 vs. ExPASy TrEMBL
Match: A0A5A7U1U5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00520 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-05
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1  MQTHCTGYPHPHVSYMDALDHCICIEYK 29
          MQTHC GYPH HV+YMDALD C+CI+YK
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYK 28

[Close]

BLAST of Spg024957 vs. ExPASy TrEMBL
Match: A0A5D3BHA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00280 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-05
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1  MQTHCTGYPHPHVSYMDALDHCICIEYK 29
          MQTHC GYPH HV+YMDALD C+CI+YK
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYK 28

The following BLAST results are available for this feature:

BLAST of Spg024957 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98643.1	6.6e-05	78.57	hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa]	[more]
KAA0047449.1	6.6e-05	78.57	hypothetical protein E6C27_scaffold498G00520 [Cucumis melo var. makuwa]	[more]

BLAST of Spg024957 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024957 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1U5	3.2e-05	78.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BHA6	3.2e-05	78.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg024957 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024957.1	Spg024957.1	mRNA