Spg018564.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg018564.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	scaffold3: 6285424 .. 6289607 (-)
Sequence length	1008
RNA-Seq Expression	Spg018564.1
Synteny	Spg018564.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTGGCAACCGGGGTGCGTCGATTGGGATAAGAGAAGTTTCGGTTGATCAAACCCCCACGAGTCACTTGGTTGATGATAAAGAAGTTAAATCCCCTATCCATAAGAAAGGGGACTCAAAAAAAGTAGATAGGAAATTGAGAAGATTGGAGTCATCGGTGAACTATGCAGGAGAAAGACCTATCAGGAGGTCGGGGAAGCGTCAGGTTCCAAATGAAAATGATATCCTGGAATGTGAGAGGTTTGGGGGGAGGGATAAGTGTAGAGTGGTGAAAGAAGTTATCTCTCAGGAATCTCCGGACATTGTGATTTTGTTGGAGACCAAGCGTATAAGTATAATCGTGAGTTTGTTCGTAGCATTTGGGGGAATAGAAAAGTGGAATGGACTGGTATTGAGTCGATGGGTGCTTCAGGAGGAGTGCTCATTATGTGGAACGGTACTTCTGTGAACTGTTTGGAGGCGCAGATAGGGGTGTTCTCTGTGTCTATTAAAATTACCTGGAAGGGCAAGGATCTGGGGTGGGTCACCGGTACCTATGATCCCCCAAGGCCCAAAGGTAGACAAGAGTTTTGGAATGAGCTTGGGGATTTATCTGGATTATGTGGGAACAACTGGTGCATCTTGGGGGATTTTAATGTGACCCACTCCCCTTCGGAGAAGGCGTCGGGAGGGAGGGTGTCTAAATCGATGAAAATCTTTAACGAATGGATTGAGGATTGCAGTTTGTTTGATCCTCCCTTGTCTAACGGGAGATTTACCTGGGCTAACAATAGAGCGTGCAGTAGAATTGATAGATCCTTGTGTGCTAAGGGTTGGATGGAGACTTTCAGTTGTGTCAAACAAGGAGTTACCTCTGATCATTGGCCTTTAATCCTTGTCTCGGGTCCCCAGAAGTGGGGGCCTTGCCCCTTCCGCTTTGAGAATATGTGGTTGGAACACCCGTCCTCCAAACCCTCCTTCCAGTCTTGGTGGAACGTGAAGGTTTCAAGAAAGTGGGAAGGGTACAGATTTATGAGAAAGCTTAGATCTCTCAGAAGTATCCTTAAATTGTGGAATCAAGAAGTTTTTGGGGACATTAGGATTAAGAAGCAGGAAGTGTTGAACAGGATCAAAGAGATTGATTCTTTGGAGGATGGTCTTATAGATGAGATTTTAAAGGGTGAGCGTCTGTCTCTCAAATGCGAGTTTGCCAAGCTGGTTGAGAAGGAGACTATTAGTTGGAGGCAAAAGGCTAAGGTTGAGTGGGCTAAGGAAGGCAATTGCAACTCAGCTTTTTTCCATAGGATGACTAGTGGTAGAAGAAGTAAGAACACGATAGGCCCTTTTGAGAATAATATGGGGGTGTTGCTCCATGAGGAGGAAGATATAGAGAGGGAGATCATCTCTTTCTTCTCAAATCTTTATGCCCCTCAAGAGCCCCCCAAGCCCTTTGTTGAAGGGATCACCTGGAGCCCTATATCTGAGAGGGATAAAAATGATCTGGATGCCCCCTTCTCTTTGGAGGAAATTCGGAAGGCGGTTTTTGATTGCGATAGAGATAAAGCCCCAGGCCCGGATGGTTTTTCTATGGCCTTTTTTCAAGACAACTGGAATGACGTTAAGGGGGATTTGGAGCAGGTTTTTAGAGAATTCTTTGAGCGAGGCATTTTGGATAGTTCGTTAAATGAGACCTTCGTTTGCCTCATCCCCAAGAAAGACAGAGCTAATAAGGTGAAGGATTTCAGACCTATAAGTCTGATCACAAGTGTGTACAAGATCATTGCCAAGGTACTCACTAAGAGACTGAAAAAAGTTCTCCCATCAACTATTACTGAGGCTCAGGGTGCCTTTCTTGAAGGACGACAAATTCTGGATCAAGCCCTTATTGCGAATGAGGCTATTGAGGATTATCGTGGGAGTGGGCGTGAGGGAGTGGTTTTTAAGATTGACTTTGAGAAGGCCTATGATCACGTGGACTGGAATTTCTTGGACAAGATCTTGGCTAAGAAAGGGTTTGGGTATAAGTGGAGATCCTGGATTTGGAGTTGTACGAGATCTGTTACGTATTCGATTCTAATCTAAGGGAGACCAAAGGGTAGAATTCGGGCTACTCGGGCCTTCGTCAAGGGGACCCTCTATCCCCGTTCCTCTTTCTCCTGGTTGTGGACGCCCTTAGTAGAATTATTTCTAGAGGAGTGGAGGGCAATATTCTTGAAGGTTTTGAGATTGGCCAGAACAAGGTTCCTTTATCCCACCTTCAGTTTGCAGATGATACGATCTTCTTCTGCTCCGGAAAAGAGGATTCCTTTTTACTTTTGAACCATATCCTGGCCTTCTTTGAATCCATGTCCGGTTTAAATATTAATAGGAGTAAATGCCAGATTTTGAGCCTGAACTGTGAGGTTAGTAAGGTGAGGAGATGGGCAGAGCTGGTTGGTTGTGACATGAGTTCGCTCCGTTCTTCTTACTTAGGCTTGCCATTGGGGCATAATCCGAGATCTACGTTGTTCTGGGACCCTGTGGTGGATAAAGTGAGGAAAATACTTGCAAGTTGGAAAAAAAGTTTTTTCTCCAAAGGAGGTAGGTTGACCCTCATCCGATCGGTCTTAAGTGGGATTCCTATCTATTATTTCTCCCTTTTTAGAGCCCCCAATACGGTGTGTAAGTATCTCGAGAAGCTTACGAGGGACTTTCTGTGGGAAGGTGTGGATGAACGCAAATCGATGCACTTGGTGAGTTGGGATTTAGTGGGGAAGCCTTTAAGACAGGGGGGCTCGATGTGGGTAATTTGAGAATTCGTAACAAAGTTTTGCTAGCAAAATGGCTTTGGCACTTTTACTCTGAATCCAACACCCTGTGGCACAAGATTATTGTTAGCAAATACGACCTTCATCCTTATGAATGGGTGACGGGGGGGATCAAAGACACTTCTAGAAATCCGTGGAAAGAAATCTCTCGGGAGCTCCCTTTTCTGACCTGTTTTATGCAATGTTCTGTGGGGAATGGGGAGGATACATATTTTTGGGAAGATAGGTGGGTGGGGGAGAGACCCCTTTGTGCTACTTTCCCTCGGCTTTATCATTTATCCTCTATGAAAAATCGCTCTGTGGCCGAGGTGTTGAACCCTTCAGGGAGCTCCCTATCCTATTCTTTTGGCTTCACCCGCTCGTTGACTGATAGAGATACTACATACCTCCTGTCTCTTTTGTCCTTGATTGAGGAGACCTCCTTCAGTACATCGAGGAGGGATTTTCGTTTGTGGAGTCCCAACCCTTCCATGGACTTCTCTTGTCGATCTTTCTTCCATTGTTTGCTAGACCCTTCCCCCACCGTTGTGTCCATTTTTTCCATGTTATGGAAGGTGAAAGTCCCAAAAAAGGTGTAGTTTTTCATTTGGCAGGTTATCCATGAAAGAGTTAATACTCTTGATCGGCTCTATAGAAAGTTCCCTTGCTTGATCGGACCTTTTTGTTGCATTACCTGTCGGATGGCGGAGGAAAACCTCGACCATATTTTGTGGAGATGCAGTTTTGCTAGGGTTGTGTGGGACATGTTTTTTGCTTCGTTTGGTTTGCAGTTTTCCAGACATAGGGGCCTTAGAGAGATGATCGAGGAGTTCCTCCCCTATCCCCCTTTTCGTGAACAAGAGAAATTCTTGTGGCAAGCGGGGATTTGTGCTATTATTTGGGGGCTTTGGGGTGAGAGAAATAATAGGACGTTTAGAGGGATTCGACTGAGGTTTGGTCCCTTGTTAGATATAATGTTTCTCTTTGGGTGTCGGTGACGCGTTTATTTTGTAATTATTCCATAGGTTTTATTATTTTGGATTCGAGCCCCTTTATCTAATGGGGTTCCCTCTTTTTTTGTATGGGCTGGTTGTTTTTGGTAGCCCTTGTATTCTTTCATTTTTTCTCAATGAAAGCATGGTTATTCATCAAAAAAAATTATTAAGCATTTTAGTCTTGGCAGGCTTGAACATCAAAATCACGAGGAGTCATACACTTGAAAAATGCAAGGGAAAATAAACAAGCGATAAAAAGGAAATACATATAATGAAAGCATTAGGGGAATGAGTTGACATGGGCATGCAGCCATGGGCAACATGCCCTGGACAAGCATGACCGTGACACTGCGCACTTAGCCCAGCGTCATGCTACGCAACAAACACATGAATTACGCGCCATGCAACGCAACCACTAG

mRNA sequence

ATGGTTTTTGGCAACCGGGGTGCGTCGATTGGGATAAGAGAAGTTTCGGTTGATCAAACCCCCACGAGTCACTTGGTTGATGATAAAGAAGTTAAATCCCCTATCCATAAGAAAGGGGACTCAAAAAAAGTAGATAGGAAATTGAGAAGATTGGAGTCATCGGTGAACTATGCAGGAGAAAGACCTATCAGGAGGTCGGGGAAGCGTCAGGTTCCAAATGAAAATGATATCCTGGAATGTGAGAGGTTTGGGGGGAGGGATAAGTGTAGAGTGGTGAAAGAAGTTATCTCTCAGGAATCTCCGGACATTGTGATTTTGTTGGAGACCAAGCGTATAAGAGGAGTGCTCATTATGTGGAACGGTACTTCTGTGAACTGTTTGGAGGCGCAGATAGGGGTGTTCTCTGTGTCTATTAAAATTACCTGGAAGGGCAAGGATCTGGGGTGGGTCACCGGTACCTATGATCCCCCAAGGCCCAAAGGTAGACAAGAGTTTTGGAATGAGCTTGGGGATTTATCTGGATTATGTGGGAACAACTGGTGCATCTTGGGGGATTTTAATGTTATCCATGAAAGAGTTAATACTCTTGATCGGCTCTATAGAAAGTTCCCTTGCTTGATCGGACCTTTTTGTTGCATTACCTGTCGGATGGCGGAGGAAAACCTCGACCATATTTTGTGGAGATGCAGTTTTGCTAGGGTTGTGTGGGACATGTTTTTTGCTTCGTTTGGTTTGCAGTTTTCCAGACATAGGGGCCTTAGAGAGATGATCGAGGAGTTCCTCCCCTATCCCCCTTTTCGTGAACAAGAGAAATTCTTGTGGCAAGCGGGGATTTGTGCTATTATTTGGGGGCTTTGGGGTGAGAGAAATAATAGGACGTTTAGAGGGATTCGACTGAGCCATGGGCAACATGCCCTGGACAAGCATGACCGTGACACTGCGCACTTAGCCCAGCGTCATGCTACGCAACAAACACATGAATTACGCGCCATGCAACGCAACCACTAG

Coding sequence (CDS)

ATGGTTTTTGGCAACCGGGGTGCGTCGATTGGGATAAGAGAAGTTTCGGTTGATCAAACCCCCACGAGTCACTTGGTTGATGATAAAGAAGTTAAATCCCCTATCCATAAGAAAGGGGACTCAAAAAAAGTAGATAGGAAATTGAGAAGATTGGAGTCATCGGTGAACTATGCAGGAGAAAGACCTATCAGGAGGTCGGGGAAGCGTCAGGTTCCAAATGAAAATGATATCCTGGAATGTGAGAGGTTTGGGGGGAGGGATAAGTGTAGAGTGGTGAAAGAAGTTATCTCTCAGGAATCTCCGGACATTGTGATTTTGTTGGAGACCAAGCGTATAAGAGGAGTGCTCATTATGTGGAACGGTACTTCTGTGAACTGTTTGGAGGCGCAGATAGGGGTGTTCTCTGTGTCTATTAAAATTACCTGGAAGGGCAAGGATCTGGGGTGGGTCACCGGTACCTATGATCCCCCAAGGCCCAAAGGTAGACAAGAGTTTTGGAATGAGCTTGGGGATTTATCTGGATTATGTGGGAACAACTGGTGCATCTTGGGGGATTTTAATGTTATCCATGAAAGAGTTAATACTCTTGATCGGCTCTATAGAAAGTTCCCTTGCTTGATCGGACCTTTTTGTTGCATTACCTGTCGGATGGCGGAGGAAAACCTCGACCATATTTTGTGGAGATGCAGTTTTGCTAGGGTTGTGTGGGACATGTTTTTTGCTTCGTTTGGTTTGCAGTTTTCCAGACATAGGGGCCTTAGAGAGATGATCGAGGAGTTCCTCCCCTATCCCCCTTTTCGTGAACAAGAGAAATTCTTGTGGCAAGCGGGGATTTGTGCTATTATTTGGGGGCTTTGGGGTGAGAGAAATAATAGGACGTTTAGAGGGATTCGACTGAGCCATGGGCAACATGCCCTGGACAAGCATGACCGTGACACTGCGCACTTAGCCCAGCGTCATGCTACGCAACAAACACATGAATTACGCGCCATGCAACGCAACCACTAG

Protein sequence

MVFGNRGASIGIREVSVDQTPTSHLVDDKEVKSPIHKKGDSKKVDRKLRRLESSVNYAGERPIRRSGKRQVPNENDILECERFGGRDKCRVVKEVISQESPDIVILLETKRIRGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVIHERVNTLDRLYRKFPCLIGPFCCITCRMAEENLDHILWRCSFARVVWDMFFASFGLQFSRHRGLREMIEEFLPYPPFREQEKFLWQAGICAIIWGLWGERNNRTFRGIRLSHGQHALDKHDRDTAHLAQRHATQQTHELRAMQRNH

Homology

[Close]

BLAST of Spg018564.1 vs. NCBI nr
Match: TYK11201.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-17
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 193 VNTLDRLYRKFPCLIGPFCCITCRMAEENLDHILWRCSFARVVWDMFFASFGLQFSRHRG 252
           +NT+DRL +    L+GPF C  C+ A+E+LD++ W C   R VW+ F   F   F   R 
Sbjct: 140 INTIDRLVKSMTLLVGPFSCFLCQKAKEDLDNLFWDCQHERAVWNSFLQEFDSIFVGQRS 199

Query: 253 LREMIEEFLPYPPFREQEKFLWQAGICAII 283
           +R  IEEFL +PPFRE+   LW AG+CA+I
Sbjct: 200 VRVTIEEFLLHPPFREKWCILWLAGVCAVI 229

[Close]

BLAST of Spg018564.1 vs. NCBI nr
Match: RVW92960.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-16
Identity = 52/156 (33.33%), Postives = 85/156 (54.49%), Query Frame = 0


Query: 46   RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVIS 105
            RK+ +++S +     R +R +GK       + L  ++         G + K R V+  +S
Sbjct: 896  RKMVKVQSVLESLRIRIVRDNGKGAEVESKNTLSADKILSWNTRGLGSKMKRRTVRRFLS 955

Query: 106  QESPDIVILLETKRI----RGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGT 165
             +SPD+V+L ETKR+    RG++I+W+     C E  +G F +++K+    +   W+T  
Sbjct: 956  TQSPDVVMLQETKRVNWDRRGIVILWDSNKFKCAEKMLGSFFITVKLNSGEEGSFWLTLV 1015

Query: 166  YDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI 190
            YD  +P GR++FW E  DL GL    WC+ GDF+VI
Sbjct: 1016 YDLNKPLGRKDFWLEHQDLYGLSFPRWCVGGDFDVI 1051

[Close]

BLAST of Spg018564.1 vs. NCBI nr
Match: XP_028093340.1 (uncharacterized protein LOC114293463 [Camellia sinensis])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-16
Identity = 56/149 (37.58%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 91  VVKEVISQESPDIVILLETK---------------------------RIRGVLIMWNGTS 150
           VVKEV+  + PDIV+  ETK                           R  G+LIMW+   
Sbjct: 3   VVKEVLKMQQPDIVMFQETKCEECDRIFIRSVWGTRFRRWAVLPSTGRSGGILIMWDDRV 62

Query: 151 VNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCIL 208
           V+  E   GVFS+SI    +   + W+TG Y P +P  RQE+W+EL  L GLC  NWC+ 
Sbjct: 63  VSKCEVVAGVFSLSINFRNRDNKVWWLTGVYGPIKPGSRQEWWDELAGLFGLCSPNWCVG 122

[Close]

BLAST of Spg018564.1 vs. NCBI nr
Match: XP_028075126.1 (uncharacterized protein LOC114277426 [Camellia sinensis])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-16
Identity = 56/154 (36.36%), Postives = 78/154 (50.65%), Query Frame = 0


Query: 86  RDKCRVVKEVISQESPDIVILLETK---------------------------RIRGVLIM 145
           R K  VVK+++  + PD+V+  ETK                           R  G+LIM
Sbjct: 14  RRKRDVVKDILKTQQPDVVMFQETKCEECDRVFIRSVWGTRFRRWAVLPSTGRSGGILIM 73

Query: 146 WNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGN 205
           W+   V+  E  +GVFS+SIK   +     W+TG Y P RP  RQ++W+ELG L GLC  
Sbjct: 74  WDDRVVSECEVVVGVFSLSIKFRNRDNKEWWLTGVYGPNRPWSRQDWWDELGGLFGLCTP 133

Query: 206 NWCILGDFNVIH---ERVN--TLDRLYRKFPCLI 208
           NWC+  DFNV+    E++N  + +R  R F   I
Sbjct: 134 NWCVGWDFNVVRLASEKLNGVSTNRSMRDFDSFI 167

[Close]

BLAST of Spg018564.1 vs. NCBI nr
Match: RVW16203.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-16
Identity = 55/179 (30.73%), Postives = 86/179 (48.04%), Query Frame = 0


Query: 46  RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVIS 105
           RK+ +++S +     R +R +GK         L  ++         G R K R V+  +S
Sbjct: 268 RKMVKVQSVLESLRIRIVRDNGKGVEGENKSTLSADKILSWNTRGLGSRKKRRTVRRFLS 327

Query: 106 QESPDIVILLETKRI---------------------------RGVLIMWNGTSVNCLEAQ 165
            ++PD+V+L ETKR+                            G++I+W+     C E  
Sbjct: 328 TQNPDVVMLQETKRVIWDMRFVSSVWKGRSLEWVALPACGASGGIVILWDSIKFKCTEKV 387

Query: 166 IGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI 190
           +G FSV++K+ +  +   W+T  YDP +P  R++FW EL DL GL    WC+ GDFNVI
Sbjct: 388 LGSFSVTVKLNFDEEGSFWLTSVYDPNKPLWRKDFWLELQDLYGLTFPRWCVGGDFNVI 446

[Close]

BLAST of Spg018564.1 vs. ExPASy TrEMBL
Match: A0A5D3CHC7 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.1e-18
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 193 VNTLDRLYRKFPCLIGPFCCITCRMAEENLDHILWRCSFARVVWDMFFASFGLQFSRHRG 252
           +NT+DRL +    L+GPF C  C+ A+E+LD++ W C   R VW+ F   F   F   R 
Sbjct: 140 INTIDRLVKSMTLLVGPFSCFLCQKAKEDLDNLFWDCQHERAVWNSFLQEFDSIFVGQRS 199

Query: 253 LREMIEEFLPYPPFREQEKFLWQAGICAII 283
           +R  IEEFL +PPFRE+   LW AG+CA+I
Sbjct: 200 VRVTIEEFLLHPPFREKWCILWLAGVCAVI 229

[Close]

BLAST of Spg018564.1 vs. ExPASy TrEMBL
Match: A0A438I8C7 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_558 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.3e-17
Identity = 52/156 (33.33%), Postives = 85/156 (54.49%), Query Frame = 0


Query: 46   RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVIS 105
            RK+ +++S +     R +R +GK       + L  ++         G + K R V+  +S
Sbjct: 896  RKMVKVQSVLESLRIRIVRDNGKGAEVESKNTLSADKILSWNTRGLGSKMKRRTVRRFLS 955

Query: 106  QESPDIVILLETKRI----RGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGT 165
             +SPD+V+L ETKR+    RG++I+W+     C E  +G F +++K+    +   W+T  
Sbjct: 956  TQSPDVVMLQETKRVNWDRRGIVILWDSNKFKCAEKMLGSFFITVKLNSGEEGSFWLTLV 1015

Query: 166  YDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI 190
            YD  +P GR++FW E  DL GL    WC+ GDF+VI
Sbjct: 1016 YDLNKPLGRKDFWLEHQDLYGLSFPRWCVGGDFDVI 1051

[Close]

BLAST of Spg018564.1 vs. ExPASy TrEMBL
Match: A0A438BZ12 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_197 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-16
Identity = 55/179 (30.73%), Postives = 86/179 (48.04%), Query Frame = 0


Query: 46  RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVIS 105
           RK+ +++S +     R +R +GK         L  ++         G R K R V+  +S
Sbjct: 268 RKMVKVQSVLESLRIRIVRDNGKGVEGENKSTLSADKILSWNTRGLGSRKKRRTVRRFLS 327

Query: 106 QESPDIVILLETKRI---------------------------RGVLIMWNGTSVNCLEAQ 165
            ++PD+V+L ETKR+                            G++I+W+     C E  
Sbjct: 328 TQNPDVVMLQETKRVIWDMRFVSSVWKGRSLEWVALPACGASGGIVILWDSIKFKCTEKV 387

Query: 166 IGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI 190
           +G FSV++K+ +  +   W+T  YDP +P  R++FW EL DL GL    WC+ GDFNVI
Sbjct: 388 LGSFSVTVKLNFDEEGSFWLTSVYDPNKPLWRKDFWLELQDLYGLTFPRWCVGGDFNVI 446

[Close]

BLAST of Spg018564.1 vs. ExPASy TrEMBL
Match: M5WJ76 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 51/133 (38.35%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 84  GGRDKCRVVKEVISQESPDIVILLETK---------------------------RIRGVL 143
           G R K  +VKE + +  PDIVILLETK                           R  G+ 
Sbjct: 334 GSRRKRLLVKEQLRRLKPDIVILLETKKEIVDRQLVAGVWGSRFKEWVFSPSLGRSGGIA 393

Query: 144 IMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLC 190
           ++WN  SV+ +++ +G FSVSI+I        W++G Y P R + R  FW EL DL G C
Sbjct: 394 VLWNSQSVSVIDSMVGEFSVSIRIEENIGTDWWLSGIYGPCRQRERNSFWEELADLYGYC 453

[Close]

BLAST of Spg018564.1 vs. ExPASy TrEMBL
Match: A0A5E4F090 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035017 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-16
Identity = 51/133 (38.35%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 84  GGRDKCRVVKEVISQESPDIVILLETK---------------------------RIRGVL 143
           G R K  +VKE + +  PDIVILLETK                           R  G+ 
Sbjct: 19  GSRRKRLLVKEQLRRLKPDIVILLETKKEIVDRQLVTGVWGSRFKEWVFSPSLGRSGGIA 78

Query: 144 IMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLC 190
           ++WN  SV+ +++ +G FSVSI+I        W++G Y P R + R  FW EL DL G C
Sbjct: 79  VLWNSQSVSVIDSMVGDFSVSIRIVENIGTDWWLSGIYGPCRQRERISFWEELADLYGYC 138

[Close]

BLAST of Spg018564.1 vs. TAIR 10
Match: AT4G10613.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.0e-04
Identity = 33/107 (30.84%), Postives = 48/107 (44.86%), Query Frame = 0


Query: 193 VNTLDRLYRK-----FPCLIGPFCCITCRMAEENLDHILWRCSFARVVWDMFFASFGL-- 252
           ++ LDRL  +     +   I P CC+ C  + E  DH++  C F+  +W+M  A   L  
Sbjct: 3   ISNLDRLPTRARLVSWGLQISPLCCL-CSQSVETRDHLILTCGFSSSIWNMVQARLRLQP 62

Query: 253 -QFSRHRGLREMIEEFLPYPPFREQEKFLWQAGICAIIWGLWGERNN 292
            QF     L   I+      P     K + QA +CAI    W +RNN
Sbjct: 63  VQFRVWESLLSWIKLSTASSP-SIIRKLVAQATVCAI----WKQRNN 103

The following BLAST results are available for this feature:

BLAST of Spg018564.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11201.1	1.7e-17	46.67	SIL1 [Cucumis melo var. makuwa]	[more]
RVW92960.1	1.1e-16	33.33	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
XP_028093340.1	1.1e-16	37.58	uncharacterized protein LOC114293463 [Camellia sinensis]	[more]
XP_028075126.1	1.9e-16	36.36	uncharacterized protein LOC114277426 [Camellia sinensis]	[more]
RVW16203.1	2.4e-16	30.73	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]

BLAST of Spg018564.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg018564.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHC7	8.1e-18	46.67	SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1	[more]
A0A438I8C7	5.3e-17	33.33	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438BZ12	1.2e-16	30.73	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
M5WJ76	1.5e-16	38.35	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A5E4F090	2.0e-16	38.35	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3...	[more]

BLAST of Spg018564.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10613.1	1.0e-04	30.84	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 78..242 e-value: 3.9E-9 score: 38.6
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 86..240

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg018564	Spg018564	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg018564.1-cds	Spg018564.1-cds-scaffold3:6285424..6285532	CDS
Spg018564.1-cds	Spg018564.1-cds-scaffold3:6285886..6286223	CDS
Spg018564.1-cds	Spg018564.1-cds-scaffold3:6288967..6289190	CDS
Spg018564.1-cds	Spg018564.1-cds-scaffold3:6289271..6289607	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg018564.1	Spg018564.1-protein	polypeptide