Spg018551.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg018551.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	SAM_MT_RSMB_NOP domain-containing protein
Location	scaffold3: 9482430 .. 9482823 (+)
Sequence length	276
RNA-Seq Expression	Spg018551.1
Synteny	Spg018551.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAATAAGATACCAACTGCTCAATCTTCAGAGGCAGTGGAAGAAGATAATGAGCCAGAGAAGAATGATGGAGAATGTGTTCACCCGCCAGTGAAGGATGGTAAAAAGAGGAAGGTTTTGGAAAACAATGACGTTGTTAATGGGAAAGAAGCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGGAAATTTCCTTCAAAAGAGGAAATCTCAAAAGCTAGGTGAGAACTTGGTTGATCTTCCCGTAATTGTAGCAGTAGTTTAGCCTTGAAAGCTGGTTGTTTTTGCCATATGGTTGTCTCTGAACGATTCTTATGGTTCATTTTGAACTCGATGCAGGGAAGAAAAACGACAAGCTTTGAGGGAAAAGAAAGTTGGGAGCAAGAAAGGGTAA

mRNA sequence

ATGAGCAATAAGATACCAACTGCTCAATCTTCAGAGGCAGTGGAAGAAGATAATGAGCCAGAGAAGAATGATGGAGAATGTGTTCACCCGCCAGTGAAGGATGGTAAAAAGAGGAAGGTTTTGGAAAACAATGACGTTGTTAATGGGAAAGAAGCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGGAAATTTCCTTCAAAAGAGGAAATCTCAAAAGCTAGGGAAGAAAAACGACAAGCTTTGAGGGAAAAGAAAGTTGGGAGCAAGAAAGGGTAA

Coding sequence (CDS)

ATGAGCAATAAGATACCAACTGCTCAATCTTCAGAGGCAGTGGAAGAAGATAATGAGCCAGAGAAGAATGATGGAGAATGTGTTCACCCGCCAGTGAAGGATGGTAAAAAGAGGAAGGTTTTGGAAAACAATGACGTTGTTAATGGGAAAGAAGCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGGAAATTTCCTTCAAAAGAGGAAATCTCAAAAGCTAGGGAAGAAAAACGACAAGCTTTGAGGGAAAAGAAAGTTGGGAGCAAGAAAGGGTAA

Protein sequence

MSNKIPTAQSSEAVEEDNEPEKNDGECVHPPVKDGKKRKVLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKKG

Homology

[Close]

BLAST of Spg018551.1 vs. NCBI nr
Match: XP_038897895.1 (probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Benincasa hispida])

HSP 1 Score: 115.2 bits (287), Expect = 3.0e-22
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 1   MSNKIPTAQSS----EAVEEDNEP-----EKNDGECVHPPVKDGKKR-KVLENNDVVNGK 60
           MSNKI TA+SS    EAVEEDN+      EKNDGEC+HP V D KKR KV +N+DV NGK
Sbjct: 511 MSNKISTARSSESLEEAVEEDNDAGKSGNEKNDGECLHPQVNDSKKRKKVSQNHDVGNGK 570

Query: 61  EAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           E+KPTVEKRKKRKFPS+EEI++AREEKRQALREKK G+KK
Sbjct: 571 ESKPTVEKRKKRKFPSREEIARAREEKRQALREKKAGNKK 610

[Close]

BLAST of Spg018551.1 vs. NCBI nr
Match: XP_022936087.1 (probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X2 [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-21
Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG- 60
           MSNKIPTAQSSE +EE  E          EK+DGEC+HP V DGKKR KV +N+D  NG 
Sbjct: 504 MSNKIPTAQSSELLEETAEEDSESEKSGNEKDDGECLHPKVSDGKKRKKVSKNHDDENGE 563

Query: 61  KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSKK
Sbjct: 564 EESKPTVEKRKKRKFPSREEISKAREEKRQALREKKTGSKK 604

[Close]

BLAST of Spg018551.1 vs. NCBI nr
Match: XP_022936085.1 (probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X1 [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-21
Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG- 60
           MSNKIPTAQSSE +EE  E          EK+DGEC+HP V DGKKR KV +N+D  NG 
Sbjct: 508 MSNKIPTAQSSELLEETAEEDSESEKSGNEKDDGECLHPKVSDGKKRKKVSKNHDDENGE 567

Query: 61  KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSKK
Sbjct: 568 EESKPTVEKRKKRKFPSREEISKAREEKRQALREKKTGSKK 608

[Close]

BLAST of Spg018551.1 vs. NCBI nr
Match: KAG6592106.1 (26S rRNA (cytosine-C(5))-methyltransferase NOP2B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024977.1 putative 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-21
Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG- 60
           MSNKIPTAQSSE +EE  E          EK+DGEC+HP V DGKKR KV +N+D  NG 
Sbjct: 508 MSNKIPTAQSSELLEETAEEDSESEKSGNEKDDGECLHPKVSDGKKRKKVSKNHDDENGE 567

Query: 61  KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSKK
Sbjct: 568 EESKPTVEKRKKRKFPSREEISKAREEKRQALREKKTGSKK 608

[Close]

BLAST of Spg018551.1 vs. NCBI nr
Match: XP_023525424.1 (probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 5.7e-21
Identity = 69/104 (66.35%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MSNKIPTAQSSEAVEED------------NEPEKNDGECVHPPVKDGKKRK--VLENNDV 60
           MSNKIPTAQSSEA+EE+            +  EKNDGEC+HP V DGKKRK  V E ++V
Sbjct: 511 MSNKIPTAQSSEALEEEAVEEEDFEAEKKSANEKNDGECLHPQVNDGKKRKKVVSEKHEV 570

Query: 61  VNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
            NG+E+KP VEKRKKRKFPS+EEISKAREEKR+ALREKK G  K
Sbjct: 571 ENGEESKPGVEKRKKRKFPSREEISKAREEKREALREKKAGGSK 614

[Close]

BLAST of Spg018551.1 vs. ExPASy TrEMBL
Match: A0A6J1FCL8 (probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442793 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG- 60
           MSNKIPTAQSSE +EE  E          EK+DGEC+HP V DGKKR KV +N+D  NG 
Sbjct: 508 MSNKIPTAQSSELLEETAEEDSESEKSGNEKDDGECLHPKVSDGKKRKKVSKNHDDENGE 567

Query: 61  KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSKK
Sbjct: 568 EESKPTVEKRKKRKFPSREEISKAREEKRQALREKKTGSKK 608

[Close]

BLAST of Spg018551.1 vs. ExPASy TrEMBL
Match: A0A6J1F7G0 (probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442793 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG- 60
           MSNKIPTAQSSE +EE  E          EK+DGEC+HP V DGKKR KV +N+D  NG 
Sbjct: 504 MSNKIPTAQSSELLEETAEEDSESEKSGNEKDDGECLHPKVSDGKKRKKVSKNHDDENGE 563

Query: 61  KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSKK
Sbjct: 564 EESKPTVEKRKKRKFPSREEISKAREEKRQALREKKTGSKK 604

[Close]

BLAST of Spg018551.1 vs. ExPASy TrEMBL
Match: A0A6J1FRL9 (probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111446614 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.1e-21
Identity = 71/103 (68.93%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 1   MSNKIPTAQSSEAV------EEDNEPEK-----NDGECVHPPVKDGKKRK--VLENNDVV 60
           MSNKIPTAQSSEA+      EED E EK     NDGEC+HP   DGKKRK  V E ++V 
Sbjct: 507 MSNKIPTAQSSEALEEEAVEEEDIETEKSSNETNDGECLHPQANDGKKRKKVVSEKHEVE 566

Query: 61  NGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           NG+E+KP VEKRKKRKFPS+EEISKAREEKRQALREKK G  K
Sbjct: 567 NGEESKPGVEKRKKRKFPSREEISKAREEKRQALREKKAGGSK 609

[Close]

BLAST of Spg018551.1 vs. ExPASy TrEMBL
Match: A0A6J1J1T4 (probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111480547 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 68/103 (66.02%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MSNKIPTAQSSEAVEED-----------NEPEKNDGECVHPPVKDGKKRK--VLENNDVV 60
           MSNKIPT QSSEA+EE+           +  EK DGEC+HP V DGKKRK  V E ++V 
Sbjct: 513 MSNKIPTTQSSEALEEEAVEEEDIEAEKSANEKTDGECLHPQVNDGKKRKKVVSEKHEVE 572

Query: 61  NGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK 91
           NG+E+KP VEKRKKRKFPS+EEISKAREEKRQALREKK G  K
Sbjct: 573 NGEESKPGVEKRKKRKFPSREEISKAREEKRQALREKKAGGSK 615

[Close]

BLAST of Spg018551.1 vs. ExPASy TrEMBL
Match: A0A6J1CFT7 (probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Momordica charantia OX=3673 GN=LOC111010417 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.2e-20
Identity = 69/103 (66.99%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MSNKIPTAQSSE----AVEEDNEPEK-----NDGECVHPPVK--DGKKRK-VLENNDVVN 60
           MSNKIPTA+SS+    A+EEDNE +K     NDGEC+HP  +  +GKKRK VL+N+DV N
Sbjct: 512 MSNKIPTAESSDPLETAMEEDNESDKSENEENDGECLHPRKEQVEGKKRKEVLQNHDVEN 571

Query: 61  GKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKKG 92
           G+E+ P  EKRKKRKFPS+ EISKAREEKRQALREKK G KKG
Sbjct: 572 GEESTPATEKRKKRKFPSRMEISKAREEKRQALREKKAGGKKG 614

The following BLAST results are available for this feature:

BLAST of Spg018551.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897895.1	3.0e-22	72.00	probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Benincasa hispida]	[more]
XP_022936087.1	4.4e-21	71.29	probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X2 [Cucurbita ...	[more]
XP_022936085.1	4.4e-21	71.29	probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X1 [Cucurbita ...	[more]
KAG6592106.1	4.4e-21	71.29	26S rRNA (cytosine-C(5))-methyltransferase NOP2B, partial [Cucurbita argyrosperm...	[more]
XP_023525424.1	5.7e-21	66.35	probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucurbita pepo subsp....	[more]

BLAST of Spg018551.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg018551.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCL8	2.1e-21	71.29	probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X1 OS=Cucurbit...	[more]
A0A6J1F7G0	2.1e-21	71.29	probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X2 OS=Cucurbit...	[more]
A0A6J1FRL9	8.1e-21	68.93	probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Cucurbita moschata ...	[more]
A0A6J1J1T4	1.4e-20	66.02	probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Cucurbita maxima OX...	[more]
A0A6J1CFT7	5.2e-20	66.99	probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase OS=Momordica charantia...	[more]

BLAST of Spg018551.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..55

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg018551	Spg018551	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg018551.1-cds	Spg018551.1-cds-scaffold3:9482430..9482650	CDS
Spg018551.1-cds	Spg018551.1-cds-scaffold3:9482769..9482823	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg018551.1	Spg018551.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity