Spg018374.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg018374.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	agamous-like MADS-box protein AGL62
Location	scaffold3: 10265476 .. 10266741 (-)
Sequence length	507
RNA-Seq Expression	Spg018374.1
Synteny	Spg018374.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTGATAGGAAAAGTGTGGGAAAGAGGTGAGAAATTGACGGCGGTCAGAATCGGAGTGTCTTGGTACTACCGTTGCCTCCACCGTCGAATGCTTCGTCAACGTCGTTTCACCACACCGAAAATCACCAAAATTTTCTCTCTTCTACGATGTTTCATCTTGCTAGAAACCCCGATGTCCCGATGGGGTTAGGATTTTTCTACATTTTATTCATTAATCTATTTTGATTACTATACTTTATAGTTTTCTTTTTTAAATTTTAAGTGTTTTTGTAGCAACCCTGTTGTAAATATATATATATATACACATATATGTATGTATGTATTATGTATATATGTACTTGCCATAATTGAAATATAATTTGAATTCGTTTGTAAAGAACCAGAAGCTTCGTGTTCGTCTTTAATGGAGGAACTAAAATTGCAAAGAAAATCGATTGCGATGAAGAAAACCCTAAGCCGTCAGAATATTTAAATCAAGAAGTTAGAGAAGAAAAGCAGTAAAGAAGTCACCTTTTCGAAGCACCGTGCTGGACTTATCAAGAATGACGTCTAGGTCTCTATTTATTGCGGAGCAAAGGTTGCCATCATCGTCTTGTATCCCAACGGTAAGGTGTTTTCCTTCAGTCATTCTGACGATGATCTGCTTCTGGATCACTTTCTCATTGAAATCTTGTCGATGTCGAAGCCGGGTGAGAGATACGTCTCTATGGCGTTGTTTAACTGCGATTTTGTCGATTTAGCGGTAGAACTGGAAGCAGAGAAGAAGCTAGAGACAAAGTTGATAGAGACGATGGAGGATTTCAGGAAGAACGAAGGATTCCGGTGGGAGTAAACGATTGAAGGGATGAGATCGGAGGAATTGAGGGAATTTTATATTGGAGTTGATGTATTTGAGAGGCAAAGATGAAGGATTGGAATTTCGTAATTCCATAAAGCGGAAGCGTGATTGGGACCGATTCGTAATTAATTTTGTTTAATCTAAAATACCAATACATTGGCAATAATATTAGAACTATTCTAAATATATATTAAGGCTAAGCATACAAAATATTAGATCTAAATCTAATTTATAAAGTAACAAATTACTTACTCTCGTTGACGACTCAGATTAAATTCACCAACTGCTTGTGAATTAATCACGAACTAGTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACATCTAGAGACAGGAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGGAAATTCTCTGAGAGTAGGAGAATGA

mRNA sequence

ATGTATTTGATAGGAAAAGTGTGGGAAAGAGGTGAGAAATTGACGGCGGTCAGAATCGGAGTCTCTATTTATTGCGGAGCAAAGGTTGCCATCATCGTCTTGTATCCCAACGGTAAGGTGTTTTCCTTCAGTCATTCTGACGATGATCTGCTTCTGGATCACTTTCTCATTGAAATCTTGTCGATGTCGAAGCCGGGTGAGAGATACGTCTCTATGGCGTTGTTTAACTGCGATTTTGTCGATTTAGCGGTAGAACTGGAAGCAGAGAAGAAGCTAGAGACAAAGTTGATAGAGACGATGGAGGATTTCAGGAAGAACGAAGGATTCCGAGGCAAAGATGAAGGATTGGAATTTCGTAATTCCATAAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACATCTAGAGACAGGAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGGAAATTCTCTGAGAGTAGGAGAATGA

Coding sequence (CDS)

ATGTATTTGATAGGAAAAGTGTGGGAAAGAGGTGAGAAATTGACGGCGGTCAGAATCGGAGTCTCTATTTATTGCGGAGCAAAGGTTGCCATCATCGTCTTGTATCCCAACGGTAAGGTGTTTTCCTTCAGTCATTCTGACGATGATCTGCTTCTGGATCACTTTCTCATTGAAATCTTGTCGATGTCGAAGCCGGGTGAGAGATACGTCTCTATGGCGTTGTTTAACTGCGATTTTGTCGATTTAGCGGTAGAACTGGAAGCAGAGAAGAAGCTAGAGACAAAGTTGATAGAGACGATGGAGGATTTCAGGAAGAACGAAGGATTCCGAGGCAAAGATGAAGGATTGGAATTTCGTAATTCCATAAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACATCTAGAGACAGGAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGGAAATTCTCTGAGAGTAGGAGAATGA

Protein sequence

MYLIGKVWERGEKLTAVRIGVSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGFRGKDEGLEFRNSIKRKRDWDRFCEHHHYGYTGMTLRHLETGDWWESRGSLEGNSLRVGE

Homology

[Close]

BLAST of Spg018374.1 vs. NCBI nr
Match: XP_008466532.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-16
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 21  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFV 80
           +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E Y+ +A FN DF 
Sbjct: 47  LSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFA 106

Query: 81  DLAVELEAEKKLETKLIETMEDFRKNEGF 110
           D A+E EAEKK   +LI   ED RKN GF
Sbjct: 107 DFALEFEAEKKRAAELIRAAEDSRKNGGF 135

[Close]

BLAST of Spg018374.1 vs. NCBI nr
Match: KAA0041553.1 (agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa] >TYK19701.1 agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-16
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 21  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFV 80
           +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E Y+ +A FN DF 
Sbjct: 39  LSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFA 98

Query: 81  DLAVELEAEKKLETKLIETMEDFRKNEGF 110
           D A+E EAEKK   +LI   ED RKN GF
Sbjct: 99  DFALEFEAEKKRAAELIRAAEDSRKNGGF 127

[Close]

BLAST of Spg018374.1 vs. NCBI nr
Match: XP_004147877.3 (agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN59988.1 hypothetical protein Csa_002516 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 6.0e-16
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 21  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFV 80
           +S+ CGA+VAIIV  PN K+F F H D D+LLD +L   LS  KP E Y+ +A FN DF 
Sbjct: 47  LSVLCGAEVAIIVFSPNDKLFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFA 106

Query: 81  DLAVELEAEKKLETKLIETMEDFRKNEGF 110
           D A+E EAEKK   +LI   ED RKN GF
Sbjct: 107 DCALEFEAEKKRAAELIRAAEDSRKNGGF 135

[Close]

BLAST of Spg018374.1 vs. NCBI nr
Match: KAG7013413.1 (Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-15
Identity = 55/110 (50.00%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 21  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFV 80
           +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E YV +A FN DF 
Sbjct: 51  LSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFA 110

Query: 81  DLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL------EFRNSI 123
           DL +E EAEKK   +LI+  E+ R + GF  ++  EGL      EFR+S+
Sbjct: 111 DLVLEFEAEKKRAEELIQASEESRNSGGFWWEEAVEGLRLEELKEFRSSL 160

[Close]

BLAST of Spg018374.1 vs. NCBI nr
Match: XP_023549141.1 (agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-15
Identity = 54/110 (49.09%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 21  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFV 80
           +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E YV +A FN DF 
Sbjct: 39  LSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFA 98

Query: 81  DLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL------EFRNSI 123
           DL +E EAEKK   +LI+  E+ R + GF  ++  EG+      EFR+S+
Sbjct: 99  DLVLEFEAEKKRAEELIQASEESRNSGGFWWEEAVEGMRLEELKEFRSSL 148

[Close]

BLAST of Spg018374.1 vs. ExPASy Swiss-Prot
Match: O80807 (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.0e-05
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 25  CGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPG--ERYVSM--ALFNCDFV 84
           C AK+A+IV  P GKVFSF H + D+LLDHF   ++  +     E Y  +   + N  + 
Sbjct: 44  CDAKIAMIVFSPAGKVFSFGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYT 103

Query: 85  DLAVELEAEKK 92
           ++  E+E E+K
Sbjct: 104 EVKAEVEKEQK 114

[Close]

BLAST of Spg018374.1 vs. ExPASy TrEMBL
Match: A0A5D3D807 (Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G001020 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 21  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFV 80
           +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E Y+ +A FN DF 
Sbjct: 39  LSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFA 98

Query: 81  DLAVELEAEKKLETKLIETMEDFRKNEGF 110
           D A+E EAEKK   +LI   ED RKN GF
Sbjct: 99  DFALEFEAEKKRAAELIRAAEDSRKNGGF 127

[Close]

BLAST of Spg018374.1 vs. ExPASy TrEMBL
Match: A0A1S3CRI8 (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103503920 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 21  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFV 80
           +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E Y+ +A FN DF 
Sbjct: 47  LSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFA 106

Query: 81  DLAVELEAEKKLETKLIETMEDFRKNEGF 110
           D A+E EAEKK   +LI   ED RKN GF
Sbjct: 107 DFALEFEAEKKRAAELIRAAEDSRKNGGF 135

[Close]

BLAST of Spg018374.1 vs. ExPASy TrEMBL
Match: A0A0A0LE01 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-16
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 21  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFV 80
           +S+ CGA+VAIIV  PN K+F F H D D+LLD +L   LS  KP E Y+ +A FN DF 
Sbjct: 47  LSVLCGAEVAIIVFSPNDKLFCFGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFA 106

Query: 81  DLAVELEAEKKLETKLIETMEDFRKNEGF 110
           D A+E EAEKK   +LI   ED RKN GF
Sbjct: 107 DCALEFEAEKKRAAELIRAAEDSRKNGGF 135

[Close]

BLAST of Spg018374.1 vs. ExPASy TrEMBL
Match: A0A6J1H4M6 (agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC111460353 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 54/110 (49.09%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 21  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFV 80
           +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E YV +A FN DF 
Sbjct: 51  LSVLCGAEVAIIVFSPNDKVFCFGHPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFA 110

Query: 81  DLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL------EFRNSI 123
           DL +E EAEKK   +LI+  E+ R + GF  ++  EG+      EFR+S+
Sbjct: 111 DLVLEFEAEKKRAEELIQASEESRNSGGFWWEEAVEGMRLEELKEFRSSL 160

[Close]

BLAST of Spg018374.1 vs. ExPASy TrEMBL
Match: A0A6J1KVC9 (agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111499040 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-15
Identity = 53/110 (48.18%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 21  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFV 80
           +S+ CGA+VAIIV  PN KVF F H + D+LLD +L   LS  KP E YV +A FN DF 
Sbjct: 51  LSVLCGAEVAIIVFSPNDKVFCFGHPNVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFA 110

Query: 81  DLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL------EFRNSI 123
           DL +E EAEKK   +LI+  E+ R + GF  ++  EG+      EFR+S+
Sbjct: 111 DLVLEFEAEKKRAEELIQASEESRNSGGFWWEEAVEGMRLEELKEFRSSL 160

[Close]

BLAST of Spg018374.1 vs. TAIR 10
Match: AT1G65360.1 (AGAMOUS-like 23 )

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-06
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 25  CGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPG--ERYVSM--ALFNCDFV 84
           C AK+A+IV  P GKVFSF H + D+LLDHF   ++  +     E Y  +   + N  + 
Sbjct: 44  CDAKIAMIVFSPAGKVFSFGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYT 103

Query: 85  DLAVELEAEKK 92
           ++  E+E E+K
Sbjct: 104 EVKAEVEKEQK 114

The following BLAST results are available for this feature:

BLAST of Spg018374.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466532.1	2.1e-16	56.18	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
KAA0041553.1	2.1e-16	56.18	agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa] >TYK19701.1 agamo...	[more]
XP_004147877.3	6.0e-16	55.06	agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN59988.1 hypothetical p...	[more]
KAG7013413.1	1.3e-15	50.00	Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_023549141.1	2.3e-15	49.09	agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg018374.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80807	5.0e-05	38.03	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=...	[more]

BLAST of Spg018374.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D807	1.0e-16	56.18	Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CRI8	1.0e-16	56.18	agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103503920 PE=4...	[more]
A0A0A0LE01	2.9e-16	55.06	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE...	[more]
A0A6J1H4M6	1.1e-15	49.09	agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC11146035...	[more]
A0A6J1KVC9	4.2e-15	48.18	agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111499040 ...	[more]

BLAST of Spg018374.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65360.1	3.5e-06	38.03	AGAMOUS-like 23	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 22..43 e-value: 2.4E-4 score: 20.6
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 20..64 e-value: 2.1E-5 score: 26.3
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 22..55

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg018374	Spg018374	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg018374.1-cds	Spg018374.1-cds-scaffold3:10265476..10265589	CDS
Spg018374.1-cds	Spg018374.1-cds-scaffold3:10265778..10265841	CDS
Spg018374.1-cds	Spg018374.1-cds-scaffold3:10265915..10266183	CDS
Spg018374.1-cds	Spg018374.1-cds-scaffold3:10266682..10266741	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg018374.1	Spg018374.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity