Spg018360.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg018360.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold3: 20740939 .. 20746470 (-)
Sequence length846
RNA-Seq ExpressionSpg018360.1
SyntenySpg018360.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATTTTGGACCTTTGAGATTGAATGAAGACTTGAGTTATGAAGAGAAACCAGTTTGAATCCTCGCCAGAGATCGCAAGATCCTTCGTAATAGGGAGATAACACTGGTCAAAGTGATTTGGCAGAACCATCAGGTTCAAGAAGCAACATGGGAGCAAGAAGATGATATGAGAACGAAGTACCCGGAGCTTTTCCAGGATTAGCAACTTTCGAGGACGAAAGTTGTTAAGGAAGGAAGATTGTAACGTCGGCATTCTTAAGGTGACTCTCTAACTTGAGTTATTGAGTTTTATTTCTTGTTATTTTTGGATGAAAAAGAATTAGTTTGAATAAGTCTTGGGTGGCAATTTCGTGATAAAGTGGAGTTTGTAGCCATGACTAAGCCCTAATTCTCCTTTATTTTAAGCTTGCACGCAACCCAAGACGGAGCCCCTCATCTCATTCTCTCCCTTTTTTACTCCTTTTGCCGTGAGCGTCTTCCCAGCCTCCTCTGTTTTTCTTCTTTGTCCGGCCAGCCGTAGCTCCGACGTCGATGGTAGGCGCTCTCCGATGAAGCTCGAGACCACAACGACGTCTCTCCGGTGCAGTAGGTCGGCGACGTCTTTAGTTTTTCGGCCAGCAAGTGAGTTTTTTCTCCTCTTCTTTGGCATTTTCTTTCGCGAATCCCTTCTCTCTCGCCCGATCTCTCACTTTCGGCCTCTCATCCCCTGTTTTTTCGTGTTGTTTCAGCGTGGTTGTGGTCGGGCAATAATGTTCTTCCGACGGCGGTTCCGTTAGGCGCGACCAGCATTGTTCGGGGGCGTTTTCTGCGTTGTTCCGACGTTTCGTTCAGTGGGTAAGTGTTTAGAAGCTGTTTCGTGTTTTATTTTTGAGTTTAATCGATTATCCATTCGTTATTCTTTCCGTTTAGCAAGCGTCCTCTTCGTATCCGGCGATTTGAGCGGTGGATCTTCGAATTTCATAGTCGTTGAGCGCTATCGGCAGTGGGTATGTGTTTTAATCTTGGGTTTTGGTTGGATCTTTGATGTTATAAGCTCACCCATTAATTGTGGCTCTTGTTTTCTTAGTTCTCTTAGCTTTCGAGGTTTTATGCGGCTTCCTAGTTATTTGCTTGAGATTTTTCCCTTTTTGAGTTAGGCTTCTCTTTCCTTTTTGTGTAGTTGGATTGGAAGGTTTGGGAGCTAAGGAAGTAATTTATAGTTTGTTTCAAGCAATCGTTTGGCTAAAGGTAAGTAGTCGTTGGATTTTAACTCTATGCATTGAACCATGTGATTGAAAAGTGACAAGACTAACGTGGTTTGGGTTTAAGCTTAAGTATTGTTTTTGGTGTAAATAAGCATGGGTGTTCTAAGCATGTGTATTTTATGGTTAATTGTAGTGAGTGTTTTGCCACCATCTGAGTTAATCTTGGGTTATGAGTTGGTCTGCATTTTGGTAATATGTGTTGGACTATGCTTGTAATGTGTGTATGAATTTATGATCTTTTGGGTAGTCGTGGTATATCTTGGATTTTCTGAAGTGGTGGTGATTATGTCTGACCACGCCAAATGTGAATTATGAATTAGTATGGTAATGGCGAGAATTGCTCTAGTCTAGATGTGTGACTTTCTCTGCTTTTCAGGTGTCTTCAATTTTTGGGTTAGTTGTAGTTACGTCGTCATGCTGCCGAATTTTCGATAGAGTCGCAATGGTCATAAAGCTAAGTTTGAATACCTTTGGGTATTAGTGTACTAGAGCACCACGTGAATGATAAGGACTGAACCTAGTGTAGGGACCTTAGTCTCGATTATGGCCTCAGATGGACTTAAAAGATCCTTAAGTCTTGTATAGCTAATATGTTTTCCTTCCCCATCTCAAGACTGATAGAACTGAGTTGCCAAGCACGTTTACGTGTGTTCTATCAGTTGACTATTAAAGCTCAGTTTCAGGCACGTTAGCGTGCGCTCTCTCAGTTCAGGACGGTGTTGAGTTTATGATCAGACACGTTTGTGCGCCAGTTGGCACCCAGACATGTTCACATGCGTCAGTTGCTCCATCGTATTCCATGTTTATATTCTAGACACGGTGTTGTGTTGGGATAGGTGTAGTTCTGCTTAGGGCGGTAAAAATTCTAGGTCGGGTCGGTTGTATGGACGACCCGACCCGACCCGAACCGGATCGGGTCATCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTAAATTCTTGCTCTTTGAGTTTACTTTGGGAAATCATGAATGAATATGGTACTATAAGCTCAAGAATTTACCTTGGAAAATTGGGTTTTATTCTTCATGGAATTGCAAAGCATTGGAAATACAACAACCACTAATATCAAGAATTTACCTTCAACTTTTACACTCCCAATTTGAAACCCGAGCTTGGAAAAAGCTTCTCTAGATTATCACCTTCTAATATCAAGAATTCAACAACCACCAAATACAACTTTTCAATTCAGGTAAACAAAAATTGAAACCACAATTTCCTTTGAACCCAAAAGCCAACCCCCCAATGTCAGAGAAGCCTAAATTTAAGCAGAATCCAAAGCTTCAAAGGCCTCCGTACACAGAACACTAACTAATTCAGCTCCACCTCCATCACTTCAACTAAATAATCTCAAACTCACACCTACATTAACAATTACATTTACACAAACAGAGTAGAAATGCAAACAAGAAGACTGTAAAAAAAGTAGAGTTAAGCCAAAATGGGTCATCCGAATCTTCTCATCAACGTATGTAATATGGAGCTGAGATCATAGTAAAGAAACTATATTCACCCTAGTAAACTTTGCAGAAACAAAACAGAAACCACAATATTCCGTAAACTTTGCTAAATGACTGATTTCTTTAGAACTGCAGGTTGCACCGCAAGTCTTCTCAAATGATGCCATTAAGTCCTTATTTAATGTTGTTAGCCTCAAGTCCATAGCTCGCAACAATTCATTTCTGGCAATTAATTTTTACATTGTTCACGGTTGAGCAACCAATTCTATGTTATGAAAAGAAATAGAATAGATAATTAAGAATTCAAATAACCTACTTCGATGCAGCTGATGAAGCTAATTCAGCCCCAGACTGCCAACACAATGAAATTTACATAAGGAGGAATTCAACTAATTAAATAAAATAATCAAAGATATAGTGAATAAGTGCTTTAAGAATCAAAGAGAAACCGGTACCCTCTGTTTTAGATTAGAGCCATTGAGGTCGCCGCCATTTGTTAAAACAGGAGATGGCAAAAACTTAAAAGACACATGGTAGTATAATCATCTTAGTTACATCAGCACTTCAAGCACTAATTCAAGTAAAGATATTAAAGCATTACCCCAAATGAATTTTGAGAATTACCTTTTTCTTCAGTCTTTGCCATCAGTCCCTGGAAAGAATATTGAAGTAAATTATCTTTCACCAGTAAGGAAATATTAAAGGAAAATGATTTTAAAAGATAGCAAGTACTACTACCTGGCCATATAAAGAAAGATGAAACTTTAAACCACTAGAAACTATCTTCTCATTCAAAGTGTCCAGCTGCGACATGAAGATAAAATCACTAAGCAGAAACAAAACAGAAACCAAAGTCACTGAGATCATAGTAAAGAAAAGACTTGTTATATGGGTACTACTACTTCAAACAAATGTGTGCTTATATTCACCCCACACTCGCTGAAGTTTCTTCACTCTGCCAAGTTTATTCTAGCAACAGATATTCCATCCTAAATTTTCTTGGTTTATTTTTTCACAATTCTGGCATTGTGTGCGCTTGGCTAACAAAGACTAGCGCCAAGCCACATTTATGATCCAAAAGCCACAAATCCTCCTACAAACAATAAACAATGAATACTTTGAATTGCAACACTAAGAAATTATATAACTTTTATACACATTTTTTTTACTGTAAACTTGATGCTTATGATTTTGCTATGTACCACTTTTTATTGGAAGATTCACTTAAAGGTTCTCATTTCCAACAAAAAGTTACAGTTTGATTAAGGAAACTTCTTTTGCCTCCAACTAAGGTTAAGCCTTTAATCATACAAGCAATTTTAGCCTAATACATGCTTAGTGAAAAGGTTTGAAGCAAGAATTGGTAATAACATTTGAAAACTCAAACCAATACAGTCATTAAGCTCGTGTTTTCAAAGTTCATTGATTCCTTTGTTTTCATCTACATTGCACGAAGTCGCCTCGTGGTGACTAGATACATGCTTTGTTGGCATTTTCAGAGCACAAGTAGAGACTAAATCAGATTGCTAATAACAGAATATGTGGAATACTTTTAAGACAACATCAACTCTCCCTAGAACCTTAGAAGAAAAACATTCAACAGAAATAAACACAAATACATGGATATCAATTACACTGTCCCATTTCACCCAAATGGAAAAAGAACCCACAAAAAGCAAGAGTGAGTTGCAGATCCAAGCAAAAGTAAGAGCCCTTTTACCTAAATTTGCAAGGAGTTTGAAGTGAGAGGCCCTCGGCTTGGGCTTTGGCGAGGAGAAATTGCAGGGAAGAGGAGCGAAGAAGGAAGATGGGTTTCTGGAATTAATTAATTTTCCTTTCTACCGCCGTCGAGAAGGATCAGAGAGCAGAGGCGGAAGAAAAGCTCTCTCTTCGAACAAAATGGGGCCTCGCCGGCGATATCAGAGGCGGCGAGAATCTGGGCTTAGTTTTTGGGCAAAAATCTGCTCCAAACGAGCAAAGCTGCGACGCCGATGTGAGGACCGAAAATTTGAAGCGAGAAAAAGAAGAAGATGCGACTGAAGGAACGAGCAAAGCTTCGAGCACGAAGAAGATGCTGCAAGAACGAGCACGAGAGGAGAAGAAGCTCCGAAGACGGCGAGTCGGCGACTATGATGTGAGAAAAAGAAGAAGATGCGATTGAGTAACTCTGCGTGTGCGTAAATCAGAACCCTAACTCTGCGTGTGCGTAAATCGGTTCGGGCCAAAAATATGCAAGGACCAAACCGAACCTTTCGGTTCGGTCACAAATAAACTTGAAAACCGAATCGAACCGAGTCGGTTCGGTTCGGTTCTTTGCACCCCTAGTTCTGCTAGAGGTGGTCGGCTAGTCTCTAGTTTACTTGCCTTACCCATCTGACCCACACAACACTCTAGTTGGCACAGGTTGGGGATAGGTAATCCACCCTAGACAGATAACCAGGCCGTAGTGTTAGAAACTCGAATGTTTATTTCCAGTTAGGTCTCTATGTCGTTAAAACCCAGAAGTTTAGTTCCAAGTTACTAGATCTCATGTTATCTGTTTCAGCTCTTAAGCGAGCTACTTACTGAGTATATTCTTATATACTCACCCATGCTACATGTCTTTCTTTTTCAGGTGGTACTTGAGAGCGTTGGTGATTGGCGAGGGTCGTGGCTTGGTTGGCTATGGGTAGAGATGTTCATTTACCCCGCGGGGTCGGGGCCCCGCGGGGACCCGCCCCGAATGGAGCGGGGAATCCCCGATTACGCGGGGAATGGGGGAGGGAGTGGGGACAAAATTTTCCCCATTCCATAA

mRNA sequence

ATGAAGCTCGAGACCACAACGACGTCTCTCCGGTGCAGTAGGTCGGCGACGTCTTTAGTTTTTCGGCCAGCAACGTGGTTGTGGTCGGGCAATAATGTTCTTCCGACGGCGGTTCCGTTAGGCGCGACCAGCATTGTTCGGGGGCGTTTTCTGCGTTGTTCCGACGTTTCGTTCAGTGGGCTTCTCTTTCCTTTTTGTGTAGTTGGATTGGAAGGTTTGGGAGCTAAGGAAGTAATTTATAGTTTGTTTCAAGCAATCGTTTGGCTAAAGGTGTCTTCAATTTTTGGGTTAGTTGTAGTTACGTCGTCATGCTGCCGAATTTTCGATAGAGTCGCAATGGTTGCACCGCAAGTCTTCTCAAATGATGCCATTAAGTCCTTATTTAATGATCAGAGAGCAGAGGCGGAAGAAAAGCTCTCTCTTCGAACAAAATGGGGCCTCGCCGGCGATATCAGAGGCGGCGAGAATCTGGGCTTAGTTTTTGGGCAAAAATCTGCTCCAAACGAGCAAAGCTGCGACGCCGATGTGAGGACCGAAAATTTGAAGCGAGAAAAAGAAGAAGATGCGACTGAAGGAACGAGCAAAGCTTCGAGCACGAAGAAGATGCTGCAAGAACGAGCACGAGAGGAGAAGAAGCTCCGAAGACGGCGAGTCGGCGACTATGATGTGGTACTTGAGAGCGTTGGTGATTGGCGAGGGTCGTGGCTTGGTTGGCTATGGGTAGAGATGTTCATTTACCCCGCGGGGTCGGGGCCCCGCGGGGACCCGCCCCGAATGGAGCGGGGAATCCCCGATTACGCGGGGAATGGGGGAGGGAGTGGGGACAAAATTTTCCCCATTCCATAA

Coding sequence (CDS)

ATGAAGCTCGAGACCACAACGACGTCTCTCCGGTGCAGTAGGTCGGCGACGTCTTTAGTTTTTCGGCCAGCAACGTGGTTGTGGTCGGGCAATAATGTTCTTCCGACGGCGGTTCCGTTAGGCGCGACCAGCATTGTTCGGGGGCGTTTTCTGCGTTGTTCCGACGTTTCGTTCAGTGGGCTTCTCTTTCCTTTTTGTGTAGTTGGATTGGAAGGTTTGGGAGCTAAGGAAGTAATTTATAGTTTGTTTCAAGCAATCGTTTGGCTAAAGGTGTCTTCAATTTTTGGGTTAGTTGTAGTTACGTCGTCATGCTGCCGAATTTTCGATAGAGTCGCAATGGTTGCACCGCAAGTCTTCTCAAATGATGCCATTAAGTCCTTATTTAATGATCAGAGAGCAGAGGCGGAAGAAAAGCTCTCTCTTCGAACAAAATGGGGCCTCGCCGGCGATATCAGAGGCGGCGAGAATCTGGGCTTAGTTTTTGGGCAAAAATCTGCTCCAAACGAGCAAAGCTGCGACGCCGATGTGAGGACCGAAAATTTGAAGCGAGAAAAAGAAGAAGATGCGACTGAAGGAACGAGCAAAGCTTCGAGCACGAAGAAGATGCTGCAAGAACGAGCACGAGAGGAGAAGAAGCTCCGAAGACGGCGAGTCGGCGACTATGATGTGGTACTTGAGAGCGTTGGTGATTGGCGAGGGTCGTGGCTTGGTTGGCTATGGGTAGAGATGTTCATTTACCCCGCGGGGTCGGGGCCCCGCGGGGACCCGCCCCGAATGGAGCGGGGAATCCCCGATTACGCGGGGAATGGGGGAGGGAGTGGGGACAAAATTTTCCCCATTCCATAA

Protein sequence

MKLETTTTSLRCSRSATSLVFRPATWLWSGNNVLPTAVPLGATSIVRGRFLRCSDVSFSGLLFPFCVVGLEGLGAKEVIYSLFQAIVWLKVSSIFGLVVVTSSCCRIFDRVAMVAPQVFSNDAIKSLFNDQRAEAEEKLSLRTKWGLAGDIRGGENLGLVFGQKSAPNEQSCDADVRTENLKREKEEDATEGTSKASSTKKMLQERAREEKKLRRRRVGDYDVVLESVGDWRGSWLGWLWVEMFIYPAGSGPRGDPPRMERGIPDYAGNGGGSGDKIFPIP
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..209

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg018360Spg018360gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg018360.1-cdsSpg018360.1-cds-scaffold3:20740939..20741118CDS
Spg018360.1-cdsSpg018360.1-cds-scaffold3:20741599..20741877CDS
Spg018360.1-cdsSpg018360.1-cds-scaffold3:20743550..20743597CDS
Spg018360.1-cdsSpg018360.1-cds-scaffold3:20744782..20744850CDS
Spg018360.1-cdsSpg018360.1-cds-scaffold3:20745244..20745334CDS
Spg018360.1-cdsSpg018360.1-cds-scaffold3:20745637..20745742CDS
Spg018360.1-cdsSpg018360.1-cds-scaffold3:20745850..20745922CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg018360.1-five_prime_utrSpg018360.1-five_prime_utr-scaffold3:20745923..20746065five_prime_UTR
Spg018360.1-five_prime_utrSpg018360.1-five_prime_utr-scaffold3:20746211..20746470five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg018360.1Spg018360.1-proteinpolypeptide