Spg017230.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg017230.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCalpain-type cysteine protease DEK1
Locationscaffold4: 41419451 .. 41424159 (+)
Sequence length624
RNA-Seq ExpressionSpg017230.1
SyntenySpg017230.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTGAGCTCTCTTTTACCTTCCTTGGCAATATGGGTTCCTTTTTTCCTTCTGAATGGGGATGGAAACAATAGAGAAGTCGTATTCTTAGAGAACTTTCACTACTCCATGAAGGACTTGAGGGAGCAAGGAGAAATAGGTATCATCAAGAGAGACATTGTTAACAAGTTGGGTAATGGTCGCAAGAGCAACGGGATGAAGAGCTTCGAGGTTTGATAGAGTGTACTTAGGAGAGGTGAGGGGGCAAAGGTCTATAGGATTGGATAGAGTTGTAGGATGCATCAAGGGGCCCGAGAAAGAAAAGATGGGGCTTGTGGTTTCCTTAAAAGAGCCAAGAGAGACTCTTTGCAGAGAAAGGAAGGGGAAGAACGAAGGTCACTTTGAAGGGAAGGGTTAGTAGGTATAGGGTTGGACAAGTAACCTTCCATGTCAAAGCCTAAGGGGGTCTGTGAGGTGTTAAAAAGGTAAAGGAAGTTTTACCCACTATTAAAGAAGTTTTACCCATCATTGATTGGGTTGTGTTTTGGCTAATTACCAAAGCTCCAGACAACTAGGGGCAGAAGAGGTTCTGGTGCTAGCTATTTTCGTGTGGGCATTAATAGTGTCTACATATTAAGTATTGTTGGTTTGTGGCAAAGAGGTTAGGGCCCACTTTCGAGAGGCTTTTCAAAGGTAGGCTATCTGAGGTGACAATCCTATTATGAAAAGCCTCGATTCTAATCTTTGGCAGGATGGGACGTTTGTCCTTTTCGTCCTTTTCACTATTTGCACTAAATTAAGTCAAACATGTCGAAGAAAATTGGTAAATGCCATGAATGTCAGGGATCCACCTAACATATTGAGCAACAACAAAGTAAAGATCAATTTGGACATTAAAAGGTTCAATTCCAGAAAGATGTGAAAGAATGGATTCAGATAGGAAGATTCCAAATGGGTTGCCCTTGACCTCATTTCATGTTACATCAAGTCCATACATTGGAGGACTTCATAAATCTCCAATGTAGGAGATGATGTTATTGGACCAAAGGTGAGAGGAAGATTTCTTATTTTGATCCAACCTCCATAGTACAGGATGACCCTGTTTGATAGAAAAGTTTGACTCCACCAAAGGAACTTCAACTGAAATGAACCAATTCCTTCCCACTCTGGTTGGTTGCAGAGTTGGTTGATCAAATCTAGATCCTCACATAGGATAGCTTTGACAAGTTGGAAATGGCTAATAGAGCAAAAGCAATGCTTATAAATTGAATCTTCAATGGCAAGTCTAATAGGTCGAGGTACCAACTATCACAGAAAGCTTTCCTTTGAATGATGACAATTTTTTCCCAATCAATGAGTTCAGGTTTAGATAGTTAGAAAGCTCCTTTTTGGTAGAATAATGGTTTTAATGGGTTGAAGGTTGGTTGGTGGTAATATTAATAAAGGCTTGGTGAGTGGTTGATAGGAGTTAATGTCTTATAGTAGGCTATCTGTATAAGAAAGGTAGGGGTTGAGACTGTTAGTCTGAGGCCACCTCCTAAAAAGTTCAAGATCCGAGAGAGTTTTTTTTCTTTTTATAGGAAACAAAAATCATACTATTGATGTATGAAATAGATACAAAAGTAGGTCCTATTTTTGATAGTTACAAAAAGGATCTCCATTGAGATATAAAGGTTGATAAGCCATAATTACAAAAGGGAGGAGATAAATTACTCCCAGATAATGCAAAGTAGGAAGTAGACTCAATGAAGGAGATAGTATTCTGGTGCTTATTAGTCTAGATCCTAGCATTTCTTTCAATTCATAAATTCCAGAGAAAGACATAGATAAATTTAAGCCACAAAGTCTTCTTTTCCTTCTTAAACGGATATCCCTTGAGGGACAAGTTGATCGAGGAGAAGATATCTCCAGGTTGAGCGGTGTACCAACCAAATGCTTCCTCTATGAAAGACCAAAAGGCTTATGCATAAGCACAGTTGCTGAACAAATGGATCAGGGACTCATTATCCATGCAGTAGAGAGAGCAGCAACTTGGAGAGATAGTAAGAAGATCTGAGAGAGTAAGAAGGTCCACCCTCTTTTTCCACTTCTTGAAAATATTAGAATGTGGTTTCTTCCCCATTGTTATTGAGATTGGTATGTCTACATAGTAACCTTGCTTGTTGATTGAGTTTCTCAACCCACAAGATGCATTCTGCATCTTTTCATTGCTCTTTGAAAAGCTTGTAAGAAAATGGTTATTTCACTAGAGTTTCATAGGTGAAGGTAAGCCATAAGAGGAAGGTCCAACTAATGGAGAGGAAGAAGAATGCAGTCTTTGTGTATCAGCCATGGGACAAAAGGTGGGGAGGAGAGAGCATCAATGGCTATTCCTTGTTTAGGAAGAGATAATTGCAAAACAGCCAAACTAGGATACATTAGCAAACTATATGTAATTTAGATAGATTTGAAATTCCACGCAAATCAATTATTTTCACATAAATTTTAACTATTTAAATTTGTAAAATAAGTGTCATAAAAATAAATATTTCAAGAAATTGAAGAAATGAATTGTGTATTTCTTATGATCTCACAAGTCACATCTTATAGCATATGTCAAAAGATTTTGAAGTATGTAAAAACAAATAAACATTTTTTAATGATTCAACTTGGCATAGAAACCAAGTTTCGTTAGTAGTAAAATTAAGTCTTCATGTGTAGGGTTAATACCTTTGATAGGCTCCTGAGAAGGCATGTCCCTTTGTTTGGCCCTTTTTGTTGCAGCCTTTGTTGGAAGGCAGAGGAAGATTTGGATCATATTCTATGGAGTTGTGATTTTGCCCGATCTACTTGGGACCTTTTCTTTGATGTGTTTGGGCAGCAGCGGATCATCTACCTGGATTTGAGAGTGTTAATTGAAAAGTTCCTCCTCGATCCGATCCTTCATGGCAAAGGAAGATTTTTATGGCAGGCCGGCATGTGTGCTCTCTTATGGAACTTATGGGGGGAGAGAAACAACAGGGTTTTTAGGGGGATAGTTAGAAGCCCACGCGATGTATGGTCTTTATCGAGATTCCATGAGTCCCTTTGGACATCGGTTACGAAGCTTTTTTGTAATTATCCTTTAGGTCTTATATTATTGGACTAGAGCCCTTTCCTTTAAGTGGTCTATCTTTTGTGGGCTTGTTTTTTGTATGCCCGTGTTTTCTTTCATTTATTCTTAATGAAAGCTGGTTTTTCTATAAAAAAAAAAAAAAAAAAGTCTTCATGTGTATGTTTCTTTTTTATAGGAAACAAAAATCATTTTATTGATGTATGAAATAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCCTATCAATGATAATTACAAGAAAGACCTCCAATGGATCAAGAGAGACAATAAGCCATGATTACAAAAAGGGAGAGATAATATACTCCAAGATAAAGCAAGATAAGATGTAAACTCAATAAAGGTATGAATATTTTGATGCTTATCTCCAAAGTCCCGAGCATTCCTTCAAGCCATAAATTCCATAAGAAAGCACAGAGGAAATTGCAACAAAGTTGGATATTTTCACTATCAAACTTTATTATTTTTCCTATGTCAATTAATTTTTTTCAAATAAAAACTAATAAATAAATGATTGAACACTCAAGTGTAAGTGTCCAACAATCATCCAACATGTGTTCATCAGCATCTGACACATGTTGAACAAGTGTTAAAAAGTATAGTATCAAATAGAAGACATATTCAACGAATATCTAACAGGTGTCCAACAAATATCAAGCAGCGTGCCTGTTAAACCATAAATGTTGAACAAGTGTCCAATAATCATCCAACATGTGTTCATCAACATCTAACATATGTCGAACAAGTGTTAGAAGTATCATATTGAACACGTATTCAACAACTATCCAACAGGCATCCAAGAAATATCAAGCAGAGTGTTTGTCGAACCAAATCGTGCAGGACTTATAGAGGCTCTAAATAAGCTCCTCCTAGATTTACCCAAAGATGACACCTACCCAAGATGACACCTAGTGGGAGAAATGATGTGAGGGGCTAAAAACAATGTATTGGTGGGTGAGAAATTAAAAAATTATGGTTTGATCATACATCTAAAGTATTGGAGGGGAACCCATAAATTTTCCACCTAATGGCTAGGAAACCTACTAGCTAAGAAGCACGGATACGATTTACGAATACGGATAAAAGACTTCTTTTTTATAATAAACCGGGCTTTCATTGAGAAAAAATAGAAAGAATACACAGGCATACAAAAAACACAAGCCTACCAAAAAAAACGAGTCAAACTATAAAAAGGGGCTCCAATCAAGCAAAATAAAACCTAAAGGGTAATTACAAAGGGGCTTAGAAACCGACACCCAGAGAGAAACATAAAATCTAACAAGAGACAAACAATGCTCCAAGAGTTGTCTCGCCTTTTGAAGATTCTATTATTTCTCTCACCCCAAGGACCCCATAAAATCGCACAAACCCCTAGTCTGCCACAAAAACTGCCCTTTCTCGCAGAAGGACAGATGGAGAAGAAGCTCCTCGAATGCCTCCCTAAAATCCTGAGTTCTGCCGAAGTTAAGCCGAACTCCTCAAAAAACAGCTCCACGCAGCACAAGCAAACTCACAACCCCAAAGCAAGTGATCCAGATCCTCAACCACTCTCCTATAAAGGATGCTACAGAATGGACGGAACAAAGAGGACCCTCTAG

mRNA sequence

ATGTTCTTGAGCTCTCTTTTACCTTCCTTGGCAATATGGGTTCCTTTTTTCCTTCTGAATGGGGATGGAAACAATAGAGAAGTCGTATTCTTAGAGAACTTTCACTACTCCATGAAGGACTTGAGGGAGCAAGGAGAAATAGGTATCATCAAGAGAGACATTGTTAACAAGTTGGGTAATGGTCGCAAGAGCAACGGGATGAAGAGCTTCGAGGGGCCCGAGAAAGAAAAGATGGGGCTTGTGGTTTCCTTAAAAGAGCCAAGAGAGACTCTTTGCAGAGAAAGGAAGGGGAAGAACGAAGGTCACTTTGAAGGGAAGGGAGATGATGTTATTGGACCAAAGGTGAAGGTAAGCCATAAGAGGAAGGTCCAACTAATGGAGAGGAAGAAGAATGCAGTCTTTGTGTATCAGCCATGGGACAAAAGCCTTTGTTGGAAGGCAGAGGAAGATTTGGATCATATTCTATGGAGTTGTGATTTTGCCCGATCTACTTGGGACCTTTTCTTTGATGTGTTTGGGCAGCAGCGGATCATCTACCTGGATTTGAGAGTGTTAATTGAAAAGTTCCTCCTCGATCCGATCCTTCATGGCAAAGGAAGATTTTTATGGCAGGCCGGCATGTAA

Coding sequence (CDS)

ATGTTCTTGAGCTCTCTTTTACCTTCCTTGGCAATATGGGTTCCTTTTTTCCTTCTGAATGGGGATGGAAACAATAGAGAAGTCGTATTCTTAGAGAACTTTCACTACTCCATGAAGGACTTGAGGGAGCAAGGAGAAATAGGTATCATCAAGAGAGACATTGTTAACAAGTTGGGTAATGGTCGCAAGAGCAACGGGATGAAGAGCTTCGAGGGGCCCGAGAAAGAAAAGATGGGGCTTGTGGTTTCCTTAAAAGAGCCAAGAGAGACTCTTTGCAGAGAAAGGAAGGGGAAGAACGAAGGTCACTTTGAAGGGAAGGGAGATGATGTTATTGGACCAAAGGTGAAGGTAAGCCATAAGAGGAAGGTCCAACTAATGGAGAGGAAGAAGAATGCAGTCTTTGTGTATCAGCCATGGGACAAAAGCCTTTGTTGGAAGGCAGAGGAAGATTTGGATCATATTCTATGGAGTTGTGATTTTGCCCGATCTACTTGGGACCTTTTCTTTGATGTGTTTGGGCAGCAGCGGATCATCTACCTGGATTTGAGAGTGTTAATTGAAAAGTTCCTCCTCGATCCGATCCTTCATGGCAAAGGAAGATTTTTATGGCAGGCCGGCATGTAA

Protein sequence

MFLSSLLPSLAIWVPFFLLNGDGNNREVVFLENFHYSMKDLREQGEIGIIKRDIVNKLGNGRKSNGMKSFEGPEKEKMGLVVSLKEPRETLCRERKGKNEGHFEGKGDDVIGPKVKVSHKRKVQLMERKKNAVFVYQPWDKSLCWKAEEDLDHILWSCDFARSTWDLFFDVFGQQRIIYLDLRVLIEKFLLDPILHGKGRFLWQAGM
Homology
[Close]
BLAST of Spg017230.1 vs. NCBI nr
Match: TYK09969.1 (calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-06
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 0 

Query: 145 WKAEEDLDHILWSCDFARSTWDLFFDVFGQQRIIYLDLRVLIEKFLLDPILHGKGRFLWQ 204
           W+ EEDLDH+LW C+     WD F   FG     + D+R  +E+FLL+     +G FLW 
Sbjct: 254 WQVEEDLDHLLWHCELVSCVWDDFLQTFGLSYARHRDVRGTVEEFLLNSPCGERGPFLWH 313

Query: 205 A 206
           A
Sbjct: 314 A 314

[Close]
BLAST of Spg017230.1 vs. NCBI nr
Match: TYK11201.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-05
Identity = 29/78 (37.18%), Postives = 41/78 (52.56%), Query Frame = 0 

Query: 130 KNAVFVYQPWDKSLCWKAEEDLDHILWSCDFARSTWDLFFDVFGQQRIIYLDLRVLIEKF 189
           K+   +  P+   LC KA+EDLD++ W C   R+ W+ F   F    +    +RV IE+F
Sbjct: 148 KSMTLLVGPFSCFLCQKAKEDLDNLFWDCQHERAVWNSFLQEFDSIFVGQRSVRVTIEEF 207

Query: 190 LLDPILHGKGRFLWQAGM 208
           LL P    K   LW AG+
Sbjct: 208 LLHPPFREKWCILWLAGV 225

[Close]
BLAST of Spg017230.1 vs. ExPASy TrEMBL
Match: A0A5D3CI74 (Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00980 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-06
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 0 

Query: 145 WKAEEDLDHILWSCDFARSTWDLFFDVFGQQRIIYLDLRVLIEKFLLDPILHGKGRFLWQ 204
           W+ EEDLDH+LW C+     WD F   FG     + D+R  +E+FLL+     +G FLW 
Sbjct: 254 WQVEEDLDHLLWHCELVSCVWDDFLQTFGLSYARHRDVRGTVEEFLLNSPCGERGPFLWH 313

Query: 205 A 206
           A
Sbjct: 314 A 314

[Close]
BLAST of Spg017230.1 vs. ExPASy TrEMBL
Match: A0A5D3CHC7 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.8e-06
Identity = 29/78 (37.18%), Postives = 41/78 (52.56%), Query Frame = 0 

Query: 130 KNAVFVYQPWDKSLCWKAEEDLDHILWSCDFARSTWDLFFDVFGQQRIIYLDLRVLIEKF 189
           K+   +  P+   LC KA+EDLD++ W C   R+ W+ F   F    +    +RV IE+F
Sbjct: 148 KSMTLLVGPFSCFLCQKAKEDLDNLFWDCQHERAVWNSFLQEFDSIFVGQRSVRVTIEEF 207

Query: 190 LLDPILHGKGRFLWQAGM 208
           LL P    K   LW AG+
Sbjct: 208 LLHPPFREKWCILWLAGV 225

The following BLAST results are available for this feature:
BLAST of Spg017230.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK09969.14.1e-0642.62calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa][more]
TYK11201.11.2e-0537.18SIL1 [Cucumis melo var. makuwa][more]
BLAST of Spg017230.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg017230.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CI742.0e-0642.62Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3CHC75.8e-0637.18SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1[more]
BLAST of Spg017230.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg017230Spg017230gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg017230.1-cdsSpg017230.1-cds-scaffold4:41419451..41419663CDS
Spg017230.1-cdsSpg017230.1-cds-scaffold4:41419740..41419845CDS
Spg017230.1-cdsSpg017230.1-cds-scaffold4:41420458..41420480CDS
Spg017230.1-cdsSpg017230.1-cds-scaffold4:41421692..41421774CDS
Spg017230.1-cdsSpg017230.1-cds-scaffold4:41422196..41422392CDS
Spg017230.1-cdsSpg017230.1-cds-scaffold4:41423966..41423967CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg017230.1-three_prime_utrSpg017230.1-three_prime_utr-scaffold4:41423968..41424159three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg017230.1Spg017230.1-proteinpolypeptide