Spg016911.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg016911.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 44700808 .. 44702840 (+)
Sequence length372
RNA-Seq ExpressionSpg016911.1
SyntenySpg016911.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCGTTCTTCGAAGCTCACGGTATTCACGGCGATCGGTCAACTATGGATTTTCCGGCGGTTGCCAATGGCAAACCTGGGGATCCGGCTGCAGAATTGTCGAATCTTCTACGCATTTGAGGTATGCCTCGTCCTCGTCGCCATCTTTAGTCATTGAATCGGATTCGATCGTCTTCTTTCGAAGTAATCTAATCAATGTTGAAGCCTCCTGGGGAATTGGGGATGGACCGTTATGAGGCATGGTGTTGAGATGGATATGGAGGTTCTCGTTCAATTTGTGGGGGCGAAACCTACTTTCTTTTATGATGAAAGTCAATCAAGGCTAACCGATCATTCCTTGTTGTGGCTCCGAACAGCCCAGATGGATGACGTTGGGGAGATTTGTGAGTGTTGATTCTCCAGGGAGGCCTGCTCTGGGTGTGGAAATGGCAAAAGAGGGAGCAGCAAATTAGCAAGGACGACGAGGCTACTGGCCCTACTTGTTCTGTATATTTGGGTACCGTTCAGTTCAGATCACGAGCTGCTTAGATTTATGGCGGGTAATGGAAGGATCTAATGCTTTGTGACAGTATAATTCTATTAAATTATATTTATATGTGATTGGTGAAATGTAAAATCTGTAAGGATTCTGGTAATTGGAAAAACTTTTTAGAGATCAACCCTCTTGACCATGTTTGAGGTTATTTGGTGATTACATTTACAAGACTCTGATTCAACCTCAGAAATGTTCAAAAGCAACCTCGTTGTAGATTTATCAATTCGTCTTGTGTATGAACGGGCACATTTGGTTCCTTATTGAATTACAATTTTCAGGACATGTTCAGAATCCACTTGGTTTGACACTTTTTCCTTGCAGATGCGTCGATAATTTCTTTTGAAACAGATGAACTTTCCATTTGGTTAATCAATTCCATATAAATTGAGATAATCTATAACGTTGGATTCTTTTTTTTGCTTGCTCTACCTCTATTCTTTCTTCTCCAACGATAATCGAAGAAATGAAGCACATTTAGCCATATACTTCATACTTTTTTTACTTCAGAATACGGATGATACTCTGATATGAATCTAGACGGTGAAGAGCTATGCTTCCACTCCATTAGGATATTTGATTTCTTACTATTATATTGCATAGTTTCTTTTTGTTTATTTCAGTACAGGTATAGGTATTATCTTCTGTGTCATTTAGATGGAATAAACTTGTTCTCGTGTTACAACCGTTTAGGAGTATGCTAACGCAGATTTTTTATTCATTATTTCTTTGTTATTGATATCGACTTTTCATGAAAGGTCCCATTTGAACTGCTCAGCCGATGTCTTGGAATTTTGCAGGCCAGAGGGGACCATCACCACAATTTGTGTATTACATCAGTGTCAGCACATTGGAATACTTCTGCCGGTACTGCTATGTTTTAAATGAAAATTCTCCTAGGAATTCCTTTCAAGGGGTCAATATGAAGAATTAAAGGAAGACAATATGTATTTTATATATCTTTGGAGGTGCAAATTGCTATGCCTTTGGATATGCATTTGAAGACTTGGATATGAGGTTATGCCCTCTTATCTTATCCTGTTTATGGGTGATATTCTGCTGCTATATTGATTGTTAGCTGTCTTTCTATTTTGAACATGTCTCTTAATTATAATAGTTTCCATTAAATGTCACAGACGCTTAGTACCATCTTGACATCTCCATAGGTTTGTGATTACTTTGCCGACATTTTAAATTTTTGTAGATAGTGAAGATGGGATCTGACGGTTCTCTAAGGCATCCAAAGTTGTAATTGTAAATGCAAAGTGCATAACAATGATTAGTGGGTCACAGTTTTCATTTTCTTAATCATCTTTGCAATCTCCTCTCGGTCCCCCTCTCAATTTCCTTCGTATATGGCTTCTAAGGTCAGAGGGACATTACTTGTACCAATCCCTTGAAGGGCTTTTCCTCCAGTAGAAGAGAAACGTGAGTTTCATACTTGTCATTATGAGGAGAATCGTGAGATAATAAAATGTATGGAAATTCCCTTTCCCCG

mRNA sequence

ATGTTTGCGTTCTTCGAAGCTCACGGTATTCACGGCGATCGGTCAACTATGGATTTTCCGGCGGTTGCCAATGGCAAACCTGGGGATCCGGCTGCAGAATTCCTCCTGGGGAATTGGGGATGGACCGTTATGAGGCATGGTGTTGAGATGGATATGGAGGGAGGCCTGCTCTGGGTGTGGAAATGGCAAAAGAGGGAGCAGCAAATTAGCAAGGACGACGAGGCTACTGGCCCTACTTGCCAGAGGGGACCATCACCACAATTTGTGTATTACATCAGTGTCAGCACATTGGAATACTTCTGCCGGTACTGCTATGTTTTAAATGAAAATTCTCCTAGGAATTCCTTTCAAGGGGTCAATATGAAGAATTAA

Coding sequence (CDS)

ATGTTTGCGTTCTTCGAAGCTCACGGTATTCACGGCGATCGGTCAACTATGGATTTTCCGGCGGTTGCCAATGGCAAACCTGGGGATCCGGCTGCAGAATTCCTCCTGGGGAATTGGGGATGGACCGTTATGAGGCATGGTGTTGAGATGGATATGGAGGGAGGCCTGCTCTGGGTGTGGAAATGGCAAAAGAGGGAGCAGCAAATTAGCAAGGACGACGAGGCTACTGGCCCTACTTGCCAGAGGGGACCATCACCACAATTTGTGTATTACATCAGTGTCAGCACATTGGAATACTTCTGCCGGTACTGCTATGTTTTAAATGAAAATTCTCCTAGGAATTCCTTTCAAGGGGTCAATATGAAGAATTAA

Protein sequence

MFAFFEAHGIHGDRSTMDFPAVANGKPGDPAAEFLLGNWGWTVMRHGVEMDMEGGLLWVWKWQKREQQISKDDEATGPTCQRGPSPQFVYYISVSTLEYFCRYCYVLNENSPRNSFQGVNMKN
Homology
[Close]
BLAST of Spg016911.1 vs. NCBI nr
Match: XP_038897218.1 (uncharacterized protein LOC120085348 [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 81  QRGPSPQFVYYISVSTLEYFCRYCYVLNENSPRNSFQ 118
           QRGPS QFVYY SV TL+YFC YC+VLNENS  +SFQ
Sbjct: 31  QRGPSLQFVYYTSVRTLDYFCWYCFVLNENSLNDSFQ 67

The following BLAST results are available for this feature:
BLAST of Spg016911.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897218.13.2e-0675.68uncharacterized protein LOC120085348 [Benincasa hispida][more]
BLAST of Spg016911.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg016911.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg016911.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg016911Spg016911gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg016911.1-cdsSpg016911.1-cds-scaffold9:44700808..44700908CDS
Spg016911.1-cdsSpg016911.1-cds-scaffold9:44701015..44701072CDS
Spg016911.1-cdsSpg016911.1-cds-scaffold9:44701213..44701291CDS
Spg016911.1-cdsSpg016911.1-cds-scaffold9:44702143..44702276CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg016911.1-three_prime_utrSpg016911.1-three_prime_utr-scaffold9:44702277..44702840three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg016911.1Spg016911.1-proteinpolypeptide