Spg016911 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016911
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 44700808 .. 44702840 (+)
RNA-Seq ExpressionSpg016911
SyntenySpg016911
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCGTTCTTCGAAGCTCACGGTATTCACGGCGATCGGTCAACTATGGATTTTCCGGCGGTTGCCAATGGCAAACCTGGGGATCCGGCTGCAGAATTGTCGAATCTTCTACGCATTTGAGGTATGCCTCGTCCTCGTCGCCATCTTTAGTCATTGAATCGGATTCGATCGTCTTCTTTCGAAGTAATCTAATCAATGTTGAAGCCTCCTGGGGAATTGGGGATGGACCGTTATGAGGCATGGTGTTGAGATGGATATGGAGGTTCTCGTTCAATTTGTGGGGGCGAAACCTACTTTCTTTTATGATGAAAGTCAATCAAGGCTAACCGATCATTCCTTGTTGTGGCTCCGAACAGCCCAGATGGATGACGTTGGGGAGATTTGTGAGTGTTGATTCTCCAGGGAGGCCTGCTCTGGGTGTGGAAATGGCAAAAGAGGGAGCAGCAAATTAGCAAGGACGACGAGGCTACTGGCCCTACTTGTTCTGTATATTTGGGTACCGTTCAGTTCAGATCACGAGCTGCTTAGATTTATGGCGGGTAATGGAAGGATCTAATGCTTTGTGACAGTATAATTCTATTAAATTATATTTATATGTGATTGGTGAAATGTAAAATCTGTAAGGATTCTGGTAATTGGAAAAACTTTTTAGAGATCAACCCTCTTGACCATGTTTGAGGTTATTTGGTGATTACATTTACAAGACTCTGATTCAACCTCAGAAATGTTCAAAAGCAACCTCGTTGTAGATTTATCAATTCGTCTTGTGTATGAACGGGCACATTTGGTTCCTTATTGAATTACAATTTTCAGGACATGTTCAGAATCCACTTGGTTTGACACTTTTTCCTTGCAGATGCGTCGATAATTTCTTTTGAAACAGATGAACTTTCCATTTGGTTAATCAATTCCATATAAATTGAGATAATCTATAACGTTGGATTCTTTTTTTTGCTTGCTCTACCTCTATTCTTTCTTCTCCAACGATAATCGAAGAAATGAAGCACATTTAGCCATATACTTCATACTTTTTTTACTTCAGAATACGGATGATACTCTGATATGAATCTAGACGGTGAAGAGCTATGCTTCCACTCCATTAGGATATTTGATTTCTTACTATTATATTGCATAGTTTCTTTTTGTTTATTTCAGTACAGGTATAGGTATTATCTTCTGTGTCATTTAGATGGAATAAACTTGTTCTCGTGTTACAACCGTTTAGGAGTATGCTAACGCAGATTTTTTATTCATTATTTCTTTGTTATTGATATCGACTTTTCATGAAAGGTCCCATTTGAACTGCTCAGCCGATGTCTTGGAATTTTGCAGGCCAGAGGGGACCATCACCACAATTTGTGTATTACATCAGTGTCAGCACATTGGAATACTTCTGCCGGTACTGCTATGTTTTAAATGAAAATTCTCCTAGGAATTCCTTTCAAGGGGTCAATATGAAGAATTAAAGGAAGACAATATGTATTTTATATATCTTTGGAGGTGCAAATTGCTATGCCTTTGGATATGCATTTGAAGACTTGGATATGAGGTTATGCCCTCTTATCTTATCCTGTTTATGGGTGATATTCTGCTGCTATATTGATTGTTAGCTGTCTTTCTATTTTGAACATGTCTCTTAATTATAATAGTTTCCATTAAATGTCACAGACGCTTAGTACCATCTTGACATCTCCATAGGTTTGTGATTACTTTGCCGACATTTTAAATTTTTGTAGATAGTGAAGATGGGATCTGACGGTTCTCTAAGGCATCCAAAGTTGTAATTGTAAATGCAAAGTGCATAACAATGATTAGTGGGTCACAGTTTTCATTTTCTTAATCATCTTTGCAATCTCCTCTCGGTCCCCCTCTCAATTTCCTTCGTATATGGCTTCTAAGGTCAGAGGGACATTACTTGTACCAATCCCTTGAAGGGCTTTTCCTCCAGTAGAAGAGAAACGTGAGTTTCATACTTGTCATTATGAGGAGAATCGTGAGATAATAAAATGTATGGAAATTCCCTTTCCCCG

mRNA sequence

ATGTTTGCGTTCTTCGAAGCTCACGGTATTCACGGCGATCGGTCAACTATGGATTTTCCGGCGGTTGCCAATGGCAAACCTGGGGATCCGGCTGCAGAATTCCTCCTGGGGAATTGGGGATGGACCGTTATGAGGCATGGTGTTGAGATGGATATGGAGGGAGGCCTGCTCTGGGTGTGGAAATGGCAAAAGAGGGAGCAGCAAATTAGCAAGGACGACGAGGCTACTGGCCCTACTTGCCAGAGGGGACCATCACCACAATTTGTGTATTACATCAGTGTCAGCACATTGGAATACTTCTGCCGGTACTGCTATGTTTTAAATGAAAATTCTCCTAGGAATTCCTTTCAAGGGGTCAATATGAAGAATTAA

Coding sequence (CDS)

ATGTTTGCGTTCTTCGAAGCTCACGGTATTCACGGCGATCGGTCAACTATGGATTTTCCGGCGGTTGCCAATGGCAAACCTGGGGATCCGGCTGCAGAATTCCTCCTGGGGAATTGGGGATGGACCGTTATGAGGCATGGTGTTGAGATGGATATGGAGGGAGGCCTGCTCTGGGTGTGGAAATGGCAAAAGAGGGAGCAGCAAATTAGCAAGGACGACGAGGCTACTGGCCCTACTTGCCAGAGGGGACCATCACCACAATTTGTGTATTACATCAGTGTCAGCACATTGGAATACTTCTGCCGGTACTGCTATGTTTTAAATGAAAATTCTCCTAGGAATTCCTTTCAAGGGGTCAATATGAAGAATTAA

Protein sequence

MFAFFEAHGIHGDRSTMDFPAVANGKPGDPAAEFLLGNWGWTVMRHGVEMDMEGGLLWVWKWQKREQQISKDDEATGPTCQRGPSPQFVYYISVSTLEYFCRYCYVLNENSPRNSFQGVNMKN
Homology
BLAST of Spg016911 vs. NCBI nr
Match: XP_038897218.1 (uncharacterized protein LOC120085348 [Benincasa hispida])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 81  QRGPSPQFVYYISVSTLEYFCRYCYVLNENSPRNSFQ 118
           QRGPS QFVYY SV TL+YFC YC+VLNENS  +SFQ
Sbjct: 31  QRGPSLQFVYYTSVRTLDYFCWYCFVLNENSLNDSFQ 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038897218.13.2e-0675.68uncharacterized protein LOC120085348 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016911.1Spg016911.1mRNA