Spg013129.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg013129.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Late embryogenesis abundant protein
Location	scaffold1: 6141736 .. 6142443 (-)
Sequence length	408
RNA-Seq Expression	Spg013129.1
Synteny	Spg013129.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAATGCAATCAGATTCGGCCGTAGTCCACCGCCAAGTGCGCTCACAACACCCGTTCCGCCGCAGCTCCGCCGTATAAGCTCGCCTGAGCTCCGATCCCGTCAAGTGCTCGGTTTCGCCACCGCACCTGATCAGAACTCACAGAACATGGACGACTCTCAGAACGCCGCCAAGGAGACTGGGTCAGATCTTTTCCCTTTTCTTCTCCATGATCACTGTATGGGTTTTTGCTCTTAAAATTTGTTTGTGAAAAACATATAAAAGAAATGGTGAGGAAGCAAGCTTAAATTTTAAAAATAAAAAATTATCTTAAATTATCTTAAATAAATTTCACCAACACCTGATGGATTTATAAAAACAGAGACATAATGTCTCATTCCTTTGGGGAAGGCTATGCGAGCCGTTGTGATGAAGAAGGATTTGGAGGAACTTATGGAGGCAATCGGTCGACCGACGATGTCGATAACGACGATAAGAAATCGGTTATTCACGAGAATCACCCTGGTAAATAAATATCTATCTATCTAATTAACGATGAAGAAATATTTTTGTGGTTTGTTTAAATGATGAAATATAAAATGTTCTAACTTGTTTCTTCTTTTGAATTGGGGAATTATCGTTGTTTGTGAAGAATATGATAGAAGCCAAGGGAGCGAAGTGAAGGAAAAGGAGAAGTCTCGCCATCAGACTCATGCAAACTGCTAG

mRNA sequence

ATGATTAATGCAATCAGATTCGGCCGTAGTCCACCGCCAAGTGCGCTCACAACACCCGTTCCGCCGCAGCTCCGCCGTATAAGCTCGCCTGAGCTCCGATCCCGTCAAGTGCTCGGTTTCGCCACCGCACCTGATCAGAACTCACAGAACATGGACGACTCTCAGAACGCCGCCAAGGAGACTGGGTCAGATCTTTTCCCTTTTCTTCTCCATGATCACTGCTATGCGAGCCGTTGTGATGAAGAAGGATTTGGAGGAACTTATGGAGGCAATCGGTCGACCGACGATGTCGATAACGACGATAAGAAATCGGTTATTCACGAGAATCACCCTGAATATGATAGAAGCCAAGGGAGCGAAGTGAAGGAAAAGGAGAAGTCTCGCCATCAGACTCATGCAAACTGCTAG

Coding sequence (CDS)

ATGATTAATGCAATCAGATTCGGCCGTAGTCCACCGCCAAGTGCGCTCACAACACCCGTTCCGCCGCAGCTCCGCCGTATAAGCTCGCCTGAGCTCCGATCCCGTCAAGTGCTCGGTTTCGCCACCGCACCTGATCAGAACTCACAGAACATGGACGACTCTCAGAACGCCGCCAAGGAGACTGGGTCAGATCTTTTCCCTTTTCTTCTCCATGATCACTGCTATGCGAGCCGTTGTGATGAAGAAGGATTTGGAGGAACTTATGGAGGCAATCGGTCGACCGACGATGTCGATAACGACGATAAGAAATCGGTTATTCACGAGAATCACCCTGAATATGATAGAAGCCAAGGGAGCGAAGTGAAGGAAAAGGAGAAGTCTCGCCATCAGACTCATGCAAACTGCTAG

Protein sequence

MINAIRFGRSPPPSALTTPVPPQLRRISSPELRSRQVLGFATAPDQNSQNMDDSQNAAKETGSDLFPFLLHDHCYASRCDEEGFGGTYGGNRSTDDVDNDDKKSVIHENHPEYDRSQGSEVKEKEKSRHQTHANC

Homology

[Close]

BLAST of Spg013129.1 vs. NCBI nr
Match: XP_022133090.1 (uncharacterized protein LOC111005770 [Momordica charantia])

HSP 1 Score: 176.0 bits (445), Expect = 2.2e-40
Identity = 97/135 (71.85%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MINAIRFGRSPPPSALTTPVPPQLRRISSPELRSRQVLGFATAP-DQNSQNMDDSQNAAK 60
           M +AIR GRSPPPS LTTP+PPQLRR SSPELRSRQV+G ATAP DQ+S NMDDS+N  K
Sbjct: 1   MFHAIRLGRSPPPSVLTTPLPPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTVK 60

Query: 61  ETGSDLFPFLLHDHCYASRCDEEGFGGTYGGNRSTDDVDNDDKKSVIHENHPEYDRSQGS 120
           +TG D+      +  YA+R DEEGFGG YGGNRS DD D + K  VIHENHPEYD+SQGS
Sbjct: 61  KTG-DIMSHSFGEG-YATRSDEEGFGGIYGGNRSDDD-DTEGKNGVIHENHPEYDKSQGS 120

Query: 121 EVKEKEKSRHQTHAN 135
           EVKEKE SRHQTHAN
Sbjct: 121 EVKEKENSRHQTHAN 132

[Close]

BLAST of Spg013129.1 vs. NCBI nr
Match: XP_038883658.1 (uncharacterized protein LOC120074572 [Benincasa hispida])

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-37
Identity = 90/134 (67.16%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 1   MINAIRFGRSPPPSALTTPVPPQLRRISSPELRSRQVLGFATAPDQNSQNMDDSQNAAKE 60
           MINAIRFGR+PPP  LT+P+PPQLRRI SPELRSRQ +G ATAPDQNS +MDDSQN AKE
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRICSPELRSRQAIGLATAPDQNSNDMDDSQNKAKE 60

Query: 61  TGSDLFPFLLHDHCYASRCDEEGFGGTYGGNRSTDDVDNDDKKSVIHENHPEYDRSQGSE 120
           TG  +         YA+R +EEGFGGTYG N+ +DD + D+KK   H N  EYD+SQG E
Sbjct: 61  TGDIMCDSF--GEAYATRSEEEGFGGTYGRNQPSDD-ETDNKKWPSHGNQHEYDKSQGCE 120

Query: 121 VKEKEKSRHQTHAN 135
           VKEKEKSRHQ HAN
Sbjct: 121 VKEKEKSRHQAHAN 131

[Close]

BLAST of Spg013129.1 vs. NCBI nr
Match: XP_023543425.1 (uncharacterized protein LOC111803315 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.5 bits (389), Expect = 6.7e-34
Identity = 85/135 (62.96%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 1   MINAIRFGRSPPPSALTTPVPPQLRRISSPELRSRQVLGFATAPDQNSQNMDDSQNAAKE 60
           M+NAIRF RSPPP  LT P+PPQLRRI  PELRSRQ++ F+TAPDQN QNMDDS+N AK+
Sbjct: 1   MMNAIRFARSPPPIVLTLPLPPQLRRIDLPELRSRQLISFSTAPDQNPQNMDDSKNTAKQ 60

Query: 61  TGSDLFPFLLHDHCYASRCDEEGFGGTYGGNRSTDDVDNDDKKSVIHENHPEYDRSQGSE 120
           T  DL       H YASR +EEGFGG Y    STD+   ++KK       PEYD+SQGSE
Sbjct: 61  T-EDLMTDSF-GHAYASRSEEEGFGGIYRSVESTDEGAENEKK-------PEYDKSQGSE 120

Query: 121 VKEKEKSRHQTHANC 136
           VKEKEK+RHQ H+NC
Sbjct: 121 VKEKEKARHQAHSNC 126

[Close]

BLAST of Spg013129.1 vs. NCBI nr
Match: XP_023543426.1 (uncharacterized protein LOC111803316 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 5.7e-33
Identity = 85/138 (61.59%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 1   MINAIRFGRSPPPSALTTPVPPQLRRISSPELRSRQVLGFATAPDQNSQNMDDSQNAAKE 60
           MINAIRFGRSPPP  LT P+PPQLRRI +PELRSRQ +GF+TAPDQN QNMDDS+N AK+
Sbjct: 1   MINAIRFGRSPPPIVLTLPLPPQLRRIDAPELRSRQRIGFSTAPDQNPQNMDDSKNTAKQ 60

Query: 61  TG---SDLFPFLLHDHCYASRCDEEGFGGTYGGNRSTDDVDNDDKKSVIHENHPEYDRSQ 120
           TG   +D F        YA R + EGFGG Y   +ST++   ++KK        EYD+SQ
Sbjct: 61  TGDIMTDSFGL-----AYACRSEYEGFGGIYRWIKSTEEGAENEKKR-------EYDKSQ 120

Query: 121 GSEVKEKEKSRHQTHANC 136
           GSEVKEKEK+RHQTH+NC
Sbjct: 121 GSEVKEKEKARHQTHSNC 126

[Close]

BLAST of Spg013129.1 vs. NCBI nr
Match: XP_011658492.1 (uncharacterized protein LOC101219972 [Cucumis sativus] >KGN48825.1 hypothetical protein Csa_003589 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 2.8e-32
Identity = 87/137 (63.50%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 1   MINAIRFGRSPPPSALTTPVPPQLRRISSPELRSRQVLGFATAPDQN--SQNMDDSQNAA 60
           MINAIRFGR+PPP  LT+P+PP+LRRISSPEL SRQ + FATAPD+N   + MDDSQN  
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60

Query: 61  KETGSDLFPFLLHDHCYASRCDEEGFGGTYGGN-RSTDDVDNDDKKSVIHENHPEYDRSQ 120
           KETG  +         YA+R +EEGFGGTYGG  +S DD ++ +KK V   N  EYD+SQ
Sbjct: 61  KETGDIMCDSF--GEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPV---NQHEYDKSQ 120

Query: 121 GSEVKEKEKSRHQTHAN 135
           GSEVKEKEKSRHQ HAN
Sbjct: 121 GSEVKEKEKSRHQAHAN 132

[Close]

BLAST of Spg013129.1 vs. ExPASy TrEMBL
Match: A0A6J1BUB9 (uncharacterized protein LOC111005770 OS=Momordica charantia OX=3673 GN=LOC111005770 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.0e-40
Identity = 97/135 (71.85%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MINAIRFGRSPPPSALTTPVPPQLRRISSPELRSRQVLGFATAP-DQNSQNMDDSQNAAK 60
           M +AIR GRSPPPS LTTP+PPQLRR SSPELRSRQV+G ATAP DQ+S NMDDS+N  K
Sbjct: 1   MFHAIRLGRSPPPSVLTTPLPPQLRRRSSPELRSRQVIGLATAPADQSSDNMDDSKNTVK 60

Query: 61  ETGSDLFPFLLHDHCYASRCDEEGFGGTYGGNRSTDDVDNDDKKSVIHENHPEYDRSQGS 120
           +TG D+      +  YA+R DEEGFGG YGGNRS DD D + K  VIHENHPEYD+SQGS
Sbjct: 61  KTG-DIMSHSFGEG-YATRSDEEGFGGIYGGNRSDDD-DTEGKNGVIHENHPEYDKSQGS 120

Query: 121 EVKEKEKSRHQTHAN 135
           EVKEKE SRHQTHAN
Sbjct: 121 EVKEKENSRHQTHAN 132

[Close]

BLAST of Spg013129.1 vs. ExPASy TrEMBL
Match: A0A0A0KGG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502630 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.4e-32
Identity = 87/137 (63.50%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 1   MINAIRFGRSPPPSALTTPVPPQLRRISSPELRSRQVLGFATAPDQN--SQNMDDSQNAA 60
           MINAIRFGR+PPP  LT+P+PP+LRRISSPEL SRQ + FATAPD+N   + MDDSQN  
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPKLRRISSPELPSRQAISFATAPDRNPKCEEMDDSQNKT 60

Query: 61  KETGSDLFPFLLHDHCYASRCDEEGFGGTYGGN-RSTDDVDNDDKKSVIHENHPEYDRSQ 120
           KETG  +         YA+R +EEGFGGTYGG  +S DD ++ +KK V   N  EYD+SQ
Sbjct: 61  KETGDIMCDSF--GEGYATRSEEEGFGGTYGGKYQSIDDDEHMNKKPV---NQHEYDKSQ 120

Query: 121 GSEVKEKEKSRHQTHAN 135
           GSEVKEKEKSRHQ HAN
Sbjct: 121 GSEVKEKEKSRHQAHAN 132

[Close]

BLAST of Spg013129.1 vs. ExPASy TrEMBL
Match: A0A6J1GEP8 (uncharacterized protein LOC111453508 OS=Cucurbita moschata OX=3662 GN=LOC111453508 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.8e-32
Identity = 83/135 (61.48%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 1   MINAIRFGRSPPPSALTTPVPPQLRRISSPELRSRQVLGFATAPDQNSQNMDDSQNAAKE 60
           MINA+RFGRSPPP  LT P+PPQLRRI  PELRSRQ +GF+TAPDQ  QNMDDS++ AK+
Sbjct: 1   MINAVRFGRSPPPIVLTLPLPPQLRRIDLPELRSRQRIGFSTAPDQTPQNMDDSKSTAKQ 60

Query: 61  TGSDLFPFLLHDHCYASRCDEEGFGGTYGGNRSTDDVDNDDKKSVIHENHPEYDRSQGSE 120
           T  DL       H YASR +EEGFGG Y    ST++   ++KK       PEYD+SQGSE
Sbjct: 61  T-EDLMTDSF-GHAYASRSEEEGFGGIYRSVESTEEGAENEKK-------PEYDKSQGSE 120

Query: 121 VKEKEKSRHQTHANC 136
           VKEKEK+ HQT +NC
Sbjct: 121 VKEKEKAGHQTQSNC 126

[Close]

BLAST of Spg013129.1 vs. ExPASy TrEMBL
Match: A0A5D3CN97 (Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002150 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.0e-32
Identity = 90/138 (65.22%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 1   MINAIRFGRSPPPSALTTPVPPQLRR-ISSPELRSRQVLGFATAPDQN--SQNMDDSQNA 60
           MINAIRFGR+PPP  LT+P+PPQLRR I S ELRSRQ  GFATAPDQN   + MD+SQN 
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60

Query: 61  AKETGSDLFPFLLHDHCYASRCDEEGFGGTYGGN-RSTDDVDNDDKKSVIHENHPEYDRS 120
            KETG  +         YA+R +EEGFGGTYGGN    DD ++ +KKSV   N  EYDRS
Sbjct: 61  TKETGDIMCDSF--GEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSV---NEHEYDRS 120

Query: 121 QGSEVKEKEKSRHQTHAN 135
           QGSEVKEKEKSRHQ HAN
Sbjct: 121 QGSEVKEKEKSRHQAHAN 133

[Close]

BLAST of Spg013129.1 vs. ExPASy TrEMBL
Match: A0A1S3B3C5 (uncharacterized protein LOC103485350 OS=Cucumis melo OX=3656 GN=LOC103485350 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.0e-32
Identity = 90/138 (65.22%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 1   MINAIRFGRSPPPSALTTPVPPQLRR-ISSPELRSRQVLGFATAPDQN--SQNMDDSQNA 60
           MINAIRFGR+PPP  LT+P+PPQLRR I S ELRSRQ  GFATAPDQN   + MD+SQN 
Sbjct: 1   MINAIRFGRTPPPIVLTSPLPPQLRRSICSLELRSRQATGFATAPDQNPKDEEMDESQNK 60

Query: 61  AKETGSDLFPFLLHDHCYASRCDEEGFGGTYGGN-RSTDDVDNDDKKSVIHENHPEYDRS 120
            KETG  +         YA+R +EEGFGGTYGGN    DD ++ +KKSV   N  EYDRS
Sbjct: 61  TKETGDIMCDSF--GEGYATRSEEEGFGGTYGGNVLDDDDEEHRNKKSV---NEHEYDRS 120

Query: 121 QGSEVKEKEKSRHQTHAN 135
           QGSEVKEKEKSRHQ HAN
Sbjct: 121 QGSEVKEKEKSRHQAHAN 133

[Close]

BLAST of Spg013129.1 vs. TAIR 10
Match: AT5G66780.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 8.0e-17
Identity = 54/135 (40.00%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 1   MINAIRFGRSPPPSALTTPVPPQLRRISSPELRSRQVLGFATAPDQNSQNMDDSQNAAKE 60
           MINA +  RS P +   +         S+P    R+V G + A   + Q MD       E
Sbjct: 1   MINAFKTIRSLPSNTTVS-------FCSTPSRLGRKVTGVSFATTSDQQKMDKKPENPNE 60

Query: 61  TGSDLFPFLLHDHCYASRCDEEGFGGTYGGNRSTDDVDNDDKKSVIHENHPEYDRSQGSE 120
              D+     +   YA+R DEEGFGG YGGN++        K++ IHENHP+YD++QGSE
Sbjct: 61  KTGDVMSH-SYGEGYATRSDEEGFGGIYGGNQTL------QKENEIHENHPDYDKTQGSE 120

Query: 121 VKEKEKSRHQTHANC 136
            KEKEK+R+QT ++C
Sbjct: 121 SKEKEKARNQTQSHC 121

The following BLAST results are available for this feature:

BLAST of Spg013129.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133090.1	2.2e-40	71.85	uncharacterized protein LOC111005770 [Momordica charantia]	[more]
XP_038883658.1	2.2e-37	67.16	uncharacterized protein LOC120074572 [Benincasa hispida]	[more]
XP_023543425.1	6.7e-34	62.96	uncharacterized protein LOC111803315 [Cucurbita pepo subsp. pepo]	[more]
XP_023543426.1	5.7e-33	61.59	uncharacterized protein LOC111803316 [Cucurbita pepo subsp. pepo]	[more]
XP_011658492.1	2.8e-32	63.50	uncharacterized protein LOC101219972 [Cucumis sativus] >KGN48825.1 hypothetical ...	[more]

BLAST of Spg013129.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg013129.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BUB9	1.0e-40	71.85	uncharacterized protein LOC111005770 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A0A0KGG3	1.4e-32	63.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502630 PE=4 SV=1	[more]
A0A6J1GEP8	1.8e-32	61.48	uncharacterized protein LOC111453508 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]
A0A5D3CN97	3.0e-32	65.22	Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3B3C5	3.0e-32	65.22	uncharacterized protein LOC103485350 OS=Cucumis melo OX=3656 GN=LOC103485350 PE=...	[more]

BLAST of Spg013129.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66780.1	8.0e-17	40.00	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..135
None	No IPR available	PANTHER	PTHR36410	EXPRESSED PROTEIN	coord: 1..133

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg013129	Spg013129	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg013129.1-cds	Spg013129.1-cds-scaffold1:6141736..6141809	CDS
Spg013129.1-cds	Spg013129.1-cds-scaffold1:6141937..6142050	CDS
Spg013129.1-cds	Spg013129.1-cds-scaffold1:6142224..6142443	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg013129.1	Spg013129.1-protein	polypeptide