Spg008437.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg008437.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold10: 31899819 .. 31902507 (-)
Sequence length891
RNA-Seq ExpressionSpg008437.1
SyntenySpg008437.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGTATCCCTTCAGGGTGGACATCCCTTCATCCCAAAAGGAAAGGCTAAAGGTAGACCTCAATCTGATATTGCAAAAAAAGGCTATATGTTATTTAATTTTGTGGCTTTCAAAGAGAGGAAGGACAATAGAATTAAATTTTGGAAACACAGGTGGATTGGGTGCTGTTCTTTGGAAGCTTCCTTCTCAGACTCATACAATATTTCTTTGAAGGAGGTTATAATTGTCGAATGTTGTAATGGGAATAGCGATGATTGGGAACTCGGTTTTAGAAGGAGACCTTTGGACAAAGAATTTAAGAGTTGGCTGGGGCTTGTGGCTATTATAGATGCAATGAGGCTTGGTGATGGGGTGGGTTTCTTTGGTCCCTTGATTATTCAGGTTGTCTCACCACCAAATTTGCTTTCATAAAGCTAACTAAAACAAATCAGAAATTGGAATCCCCCCAATTAATCTGATTTGGAAATTCAATGTCCCTAAGAAGGTTAAGATCTTCCTTTGAAGTCTCTCATATAGAAGCTTTAACACTCAAGATAGAATACAAATGAAGCTAAAAAGCTAGTATCTCTCCCCATCAGTTTGCTGCCTTTGCCTATGGAATGAAGAAATTCAAGATCACCTTTTCCACCAATGCTCTTTTCCCACTAGGGGTGGAATTTTTTGTTGAAGGATATTTGGCTTCATAGCAGATTCATTGAGTCAGTTTATCCATGTTTGTAGGCATAAAGGCTTTCTTAGAGGCTTTAAGGTGGTTAAGGACGACGTTGAAGTATCCCATATTCAATTTGCAGATGGCACCCTTCTTTTTTATATATATAAAAACCAGCTTTCATTGGGAAAAAATGAATGAATACAAGGGCAACCAAAAAAATCAGCCCACAAAAAGACCCCCTTTAGAGGAAGGGCCGCAAATCAAGAATAATAGTGCCTAGAGAATAATTACAAAAAAAAACTTAGAAACCGAGGCCCAAAGAGAAATATAGAATCTAGTAAGGGCCCAAACATCCAAAGGACCCCTCTCATGTCCCTGAAAACCCTATTACTTCTCTCACCCCAAAGGCCCCACAAAACAGCGCACACCCCAGCTAACCATAAAAACCTCCCCTTATCACAAATGGCACCCTTCTTTTTAGCAAAGGAAACAGTCAGATGGTGAAAAATTGGTAAACCTTTCTAAAGTTTTTCGAACAAGCATTTGGTCTTACCATTAATATGCAAAAAACAGCCATTATCGGCTTGAATGTGGAGAAGGATGTCGGCTTGAATGTGGAGAAGGATGAAGTCCAAGAGTTGGCTGGTATGCTGGGGTGTAAAGTTGAGTCTCTTCCTTCTAATTATCCGAGGATTACGGTTGGGGGAAAGCCCAGAATTGCTTCATTTTGAGATCCTGTCTATGAAAAAGTAAGGAGTAAGTTTGCTGTTTGGAGGGGTTTTCCTATCTCTAAAGGAGGATGTTGCTACTTTAATTAAAGTTGTTCTTTCTAGTATTTTGGTCTATTACTTGTCTATCTATAGAATTCTCGTGGAGGTGTGCCAAAAGATCGAGAAAAACTTCATAAGGTTCTAGTGGAGAGGGACTGGTGAGGCAAAGGATTCTATTTAGTCAACTGCCCCTCGGTCTTTGGGGGGAGGGGGCGCTAGGAATCGACTACCTTAGAGCTAAAAATTTGGCCCAGCTTGCAAAATGGCTTTGGTGTTTTGATAAGAAGTCCTTCGCGTTATGGAGAATGGTGGTGAAAAGCAAGTATGAGGAGTTTTTCATCTGTGATCATCATATTAATAAAAAGTGGCAAGGCAACTTTAGCCCCCGAAAGGATATTGCTATAGCAGCTAGTTTTTTTTAGGAACATAACAAGTTCAAAGTGGGAAGAGGGGATAAGGTGTTCTTTTGGAATGATTGTTGGCTGTCTGAGAATCCTCTCAAAGAGGTTGTTTCCTCACGTTTTTAGAATCTCTATGGCTAAGGATGCTAAATCTCAGGAGTTATGGAACGGGTCAGCTTGGGATTTGAGATGGAGTAGGGAGATGTTTGACCAAGAGTTGGAAGAGTGGATTAGTCTCTCTTACTTATTGAATCTGTGTAATCTCACCCAAAGTGAAGACGAGCTATGGTGGAAGTTAATGGTGTATTTAGATATGTGTTATTCTATTTAGTTGGTTTAATGTGGTTAATCCGTTAATCTTATTTATTATTCCGTTATTCTCCTTAAAATGTATAAATAAAATTCAGCTTTCAATTAATAAATGAGGAGAATTCATTGTCGAACTCTGAGTTTCTTTAGAAGCTAGAAGAGTCGAGTAAGTTCACTGTGAACTTTGCTTTGAAAGCCCTTCAGTTGAAAAAGAATGGTGCTGGAAGATGCTTTGTGTACTCAAATTTGGGAGGGTGTTGCTCCAAATAGGGTCAAGTTCTTCTTATGGACCCTCCCGATTCATAGTATTGACACGATGGACAAGGTTCAAAGGAGGTTTCCAAGTCTCCAAATCTCCCCCAAATGCATGTGCTATGTGTCTTAGAAGCAAAGAAATGTCCTGCCACCTCCTGCTTCCCAGTGCTTTTGCAAAGAAGGCGTGGAACCATTTTGGTTATGTGTTCAGGTTGCAAGGGTGTAAGCTTAGGTGCGTGGTAAGGTGGATTGATGAAGCTCTTTCCAAATTTTGTTTTAGAGATGAAGCTCATGTTCTA

mRNA sequence

ATGGTAGTATCCCTTCAGGGTGGACATCCCTTCATCCCAAAAGGAAAGGCTAAAGGTAGACCTCAATCTGATATTGCAAAAAAAGGCTATATGTTATTTAATTTTGTGGCTTTCAAAGAGAGGAAGGACAATAGAATTAAATTTTGGAAACACAGGTGGATTGGGTGCTGTTCTTTGGAAGCTTCCTTCTCAGACTCATACAATATTTCTTTGAAGGAGGTTATAATTGTCGAATGTTGTAATGGGAATAGCGATGATTGGGAACTCGGTTTTAGAAGGAGACCTTTGGACAAAGAATTTAAGAGTTGGCTGGGGCTTGTGGCTATTATAGATGCAATGAGGCTTGGTGATGGGGTGGCCATTATCGGCTTGAATGTGGAGAAGGATGTCGGCTTGAATGTGGAGAAGGATGAAGTCCAAGAGTTGGCTGGAATCGACTACCTTAGAGCTAAAAATTTGGCCCAGCTTGCAAAATGGCTTTGGTGTTTTGATAAGAAGTCCTTCGCGTTATGGAGAATGGTGGTGAAAAGCAACCCTTCAGTTGAAAAAGAATGGTGCTGGAAGATGCTTTGTGTACTCAAATTTGGGAGGGTGTTGCTCCAAATAGGGTCAAGTTCTTCTTATGGACCCTCCCGATTCATAGTATTGACACGATGGACAAGGTTCAAAGGAGGTTTCCAAGTCTCCAAATCTCCCCCAAATGCATGTGCTATGTGTCTTAGAAGCAAAGAAATGTCCTGCCACCTCCTGCTTCCCAGTGCTTTTGCAAAGAAGGCGTGGAACCATTTTGGTTATGTGTTCAGGTTGCAAGGGTGTAAGCTTAGGTGCGTGGTAAGGTGGATTGATGAAGCTCTTTCCAAATTTTGTTTTAGAGATGAAGCTCATGTTCTA

Coding sequence (CDS)

ATGGTAGTATCCCTTCAGGGTGGACATCCCTTCATCCCAAAAGGAAAGGCTAAAGGTAGACCTCAATCTGATATTGCAAAAAAAGGCTATATGTTATTTAATTTTGTGGCTTTCAAAGAGAGGAAGGACAATAGAATTAAATTTTGGAAACACAGGTGGATTGGGTGCTGTTCTTTGGAAGCTTCCTTCTCAGACTCATACAATATTTCTTTGAAGGAGGTTATAATTGTCGAATGTTGTAATGGGAATAGCGATGATTGGGAACTCGGTTTTAGAAGGAGACCTTTGGACAAAGAATTTAAGAGTTGGCTGGGGCTTGTGGCTATTATAGATGCAATGAGGCTTGGTGATGGGGTGGCCATTATCGGCTTGAATGTGGAGAAGGATGTCGGCTTGAATGTGGAGAAGGATGAAGTCCAAGAGTTGGCTGGAATCGACTACCTTAGAGCTAAAAATTTGGCCCAGCTTGCAAAATGGCTTTGGTGTTTTGATAAGAAGTCCTTCGCGTTATGGAGAATGGTGGTGAAAAGCAACCCTTCAGTTGAAAAAGAATGGTGCTGGAAGATGCTTTGTGTACTCAAATTTGGGAGGGTGTTGCTCCAAATAGGGTCAAGTTCTTCTTATGGACCCTCCCGATTCATAGTATTGACACGATGGACAAGGTTCAAAGGAGGTTTCCAAGTCTCCAAATCTCCCCCAAATGCATGTGCTATGTGTCTTAGAAGCAAAGAAATGTCCTGCCACCTCCTGCTTCCCAGTGCTTTTGCAAAGAAGGCGTGGAACCATTTTGGTTATGTGTTCAGGTTGCAAGGGTGTAAGCTTAGGTGCGTGGTAAGGTGGATTGATGAAGCTCTTTCCAAATTTTGTTTTAGAGATGAAGCTCATGTTCTA

Protein sequence

MVVSLQGGHPFIPKGKAKGRPQSDIAKKGYMLFNFVAFKERKDNRIKFWKHRWIGCCSLEASFSDSYNISLKEVIIVECCNGNSDDWELGFRRRPLDKEFKSWLGLVAIIDAMRLGDGVAIIGLNVEKDVGLNVEKDEVQELAGIDYLRAKNLAQLAKWLWCFDKKSFALWRMVVKSNPSVEKEWCWKMLCVLKFGRVLLQIGSSSSYGPSRFIVLTRWTRFKGGFQVSKSPPNACAMCLRSKEMSCHLLLPSAFAKKAWNHFGYVFRLQGCKLRCVVRWIDEALSKFCFRDEAHVL
Homology
[Close]
BLAST of Spg008437.1 vs. NCBI nr
Match: XP_022158566.1 (uncharacterized protein LOC111025019 [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 4.8e-08
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 0 

Query: 13  PKGKAKGRPQSDIAKKGYMLFNFVAFKERKDNRIKFWKHRWIGCCSLEASFSDSYNISLK 72
           PKGKAKGRP  DIAK        V FK  + +R+ FW  +W G   L   F D + +SLK
Sbjct: 280 PKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFWMDKWAGNLPLLDEFPDMFALSLK 339

Query: 73  E-VIIVECCNGNSDDWELGFRRRPLD 98
           +   + +C N  +  W+L  RR   D
Sbjct: 340 QNAYVKDCWNEENQTWDLALRRGLFD 365

[Close]
BLAST of Spg008437.1 vs. ExPASy TrEMBL
Match: A0A6J1E196 (uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025019 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-08
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 0 

Query: 13  PKGKAKGRPQSDIAKKGYMLFNFVAFKERKDNRIKFWKHRWIGCCSLEASFSDSYNISLK 72
           PKGKAKGRP  DIAK        V FK  + +R+ FW  +W G   L   F D + +SLK
Sbjct: 280 PKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFWMDKWAGNLPLLDEFPDMFALSLK 339

Query: 73  E-VIIVECCNGNSDDWELGFRRRPLD 98
           +   + +C N  +  W+L  RR   D
Sbjct: 340 QNAYVKDCWNEENQTWDLALRRGLFD 365

[Close]
BLAST of Spg008437.1 vs. ExPASy TrEMBL
Match: A0A7N2ML02 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-04
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 0 

Query: 27  KKGYMLFNFVAFKERKD-NRIKFWKHRWIGCCSLEASFSDSYNISL---KEVIIVECCNG 86
           + G+M F+ +   E +D  R+KFWKH W G  +L+ +F + Y IS      V  V C +G
Sbjct: 72  RSGWMSFSKLLLYEVEDGTRVKFWKHVWCGDRTLQEAFPELYCISRTKDSSVAEVMCWSG 131

Query: 87  NSDDWELGFRRRPLDKEFKSW 104
               W+  FRR P D E +S+
Sbjct: 132 GRIHWDAKFRRPPQDWEQESF 152

The following BLAST results are available for this feature:
BLAST of Spg008437.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158566.14.8e-0839.53uncharacterized protein LOC111025019 [Momordica charantia][more]
BLAST of Spg008437.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg008437.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E1962.3e-0839.53uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A7N2ML027.7e-0437.04Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
BLAST of Spg008437.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg008437Spg008437gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg008437.1-cdsSpg008437.1-cds-scaffold10:31899819..31900176CDS
Spg008437.1-cdsSpg008437.1-cds-scaffold10:31900761..31900863CDS
Spg008437.1-cdsSpg008437.1-cds-scaffold10:31901208..31901279CDS
Spg008437.1-cdsSpg008437.1-cds-scaffold10:31902150..31902507CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg008437.1Spg008437.1-proteinpolypeptide